Rev 155 | Blame | Last modification | View Log | Download | RSS feed
/** Copyright 1997, Regents of the University of Minnesota** separator.c** This file contains code for separator extraction** Started 8/1/97* George** $Id: separator.c,v 1.1 2003/12/31 21:32:30 bates Exp $**/#include <metis.h>/************************************************************************** This function takes a bisection and constructs a minimum weight vertex* separator out of it. It uses the node-based separator refinement for it.**************************************************************************/void ConstructSeparator(CtrlType *ctrl, GraphType *graph, float ubfactor){int i, j/* , k */, nvtxs, nbnd;idxtype *xadj, *where, *bndind;nvtxs = graph->nvtxs;xadj = graph->xadj;nbnd = graph->nbnd;bndind = graph->bndind;where = idxcopy(nvtxs, graph->where, idxwspacemalloc(ctrl, nvtxs));/* Put the nodes in the boundary into the separator */for (i=0; i<nbnd; i++) {j = bndind[i];if (xadj[j+1]-xadj[j] > 0) /* Ignore islands */where[j] = 2;}GKfree(&graph->rdata, LTERM);Allocate2WayNodePartitionMemory(ctrl, graph);idxcopy(nvtxs, where, graph->where);idxwspacefree(ctrl, nvtxs);ASSERT(IsSeparable(graph));Compute2WayNodePartitionParams(ctrl, graph);ASSERT(CheckNodePartitionParams(graph));FM_2WayNodeRefine(ctrl, graph, ubfactor, 8);ASSERT(IsSeparable(graph));}/************************************************************************** This function takes a bisection and constructs a minimum weight vertex* separator out of it. It uses an unweighted minimum-cover algorithm* followed by node-based separator refinement.**************************************************************************/void ConstructMinCoverSeparator0(CtrlType *ctrl, GraphType *graph, float ubfactor){int i, ii, j, jj, k, l, nvtxs, nbnd, bnvtxs[3], bnedges[2], csize;idxtype *xadj, *adjncy, *bxadj, *badjncy;idxtype *where, *bndind, *bndptr, *vmap, *ivmap, *cover;nvtxs = graph->nvtxs;xadj = graph->xadj;adjncy = graph->adjncy;nbnd = graph->nbnd;bndind = graph->bndind;bndptr = graph->bndptr;where = graph->where;vmap = idxwspacemalloc(ctrl, nvtxs);ivmap = idxwspacemalloc(ctrl, nbnd);cover = idxwspacemalloc(ctrl, nbnd);if (nbnd > 0) {/* Go through the boundary and determine the sizes of the bipartite graph */bnvtxs[0] = bnvtxs[1] = bnedges[0] = bnedges[1] = 0;for (i=0; i<nbnd; i++) {j = bndind[i];k = where[j];if (xadj[j+1]-xadj[j] > 0) {bnvtxs[k]++;bnedges[k] += xadj[j+1]-xadj[j];}}bnvtxs[2] = bnvtxs[0]+bnvtxs[1];bnvtxs[1] = bnvtxs[0];bnvtxs[0] = 0;bxadj = idxmalloc(bnvtxs[2]+1, "ConstructMinCoverSeparator: bxadj");badjncy = idxmalloc(bnedges[0]+bnedges[1]+1, "ConstructMinCoverSeparator: badjncy");/* Construct the ivmap and vmap */ASSERT(idxset(nvtxs, -1, vmap) == vmap);for (i=0; i<nbnd; i++) {j = bndind[i];k = where[j];if (xadj[j+1]-xadj[j] > 0) {vmap[j] = bnvtxs[k];ivmap[bnvtxs[k]++] = j;}}/* OK, go through and put the vertices of each part starting from 0 */bnvtxs[1] = bnvtxs[0];bnvtxs[0] = 0;bxadj[0] = l = 0;for (k=0; k<2; k++) {for (ii=0; ii<nbnd; ii++) {i = bndind[ii];if (where[i] == k && xadj[i] < xadj[i+1]) {for (j=xadj[i]; j<xadj[i+1]; j++) {jj = adjncy[j];if (where[jj] != k) {ASSERT(bndptr[jj] != -1);ASSERTP(vmap[jj] != -1, ("%d %d %d\n", jj, vmap[jj], graph->bndptr[jj]));badjncy[l++] = vmap[jj];}}bxadj[++bnvtxs[k]] = l;}}}ASSERT(l <= bnedges[0]+bnedges[1]);MinCover(bxadj, badjncy, bnvtxs[0], bnvtxs[1], cover, &csize);IFSET(ctrl->dbglvl, DBG_SEPINFO,printf("Nvtxs: %6d, [%5d %5d], Cut: %6d, SS: [%6d %6d], Cover: %6d\n", nvtxs, graph->pwgts[0], graph->pwgts[1], graph->mincut, bnvtxs[0], bnvtxs[1]-bnvtxs[0], csize));for (i=0; i<csize; i++) {j = ivmap[cover[i]];where[j] = 2;}GKfree(&bxadj, &badjncy, LTERM);for (i=0; i<nbnd; i++)bndptr[bndind[i]] = -1;for (nbnd=i=0; i<nvtxs; i++) {if (where[i] == 2) {bndind[nbnd] = i;bndptr[i] = nbnd++;}}}else {IFSET(ctrl->dbglvl, DBG_SEPINFO,printf("Nvtxs: %6d, [%5d %5d], Cut: %6d, SS: [%6d %6d], Cover: %6d\n", nvtxs, graph->pwgts[0], graph->pwgts[1], graph->mincut, 0, 0, 0));}idxwspacefree(ctrl, nvtxs);idxwspacefree(ctrl, graph->nbnd);idxwspacefree(ctrl, graph->nbnd);graph->nbnd = nbnd;ASSERT(IsSeparable(graph));}/************************************************************************** This function takes a bisection and constructs a minimum weight vertex* separator out of it. It uses an unweighted minimum-cover algorithm* followed by node-based separator refinement.**************************************************************************/void ConstructMinCoverSeparator(CtrlType *ctrl, GraphType *graph, float ubfactor){int i, ii, j, jj, k, l, nvtxs, nbnd, bnvtxs[3], bnedges[2], csize;idxtype *xadj, *adjncy, *bxadj, *badjncy;idxtype *where, *bndind, *bndptr, *vmap, *ivmap, *cover;nvtxs = graph->nvtxs;xadj = graph->xadj;adjncy = graph->adjncy;nbnd = graph->nbnd;bndind = graph->bndind;bndptr = graph->bndptr;where = graph->where;vmap = idxwspacemalloc(ctrl, nvtxs);ivmap = idxwspacemalloc(ctrl, nbnd);cover = idxwspacemalloc(ctrl, nbnd);if (nbnd > 0) {/* Go through the boundary and determine the sizes of the bipartite graph */bnvtxs[0] = bnvtxs[1] = bnedges[0] = bnedges[1] = 0;for (i=0; i<nbnd; i++) {j = bndind[i];k = where[j];if (xadj[j+1]-xadj[j] > 0) {bnvtxs[k]++;bnedges[k] += xadj[j+1]-xadj[j];}}bnvtxs[2] = bnvtxs[0]+bnvtxs[1];bnvtxs[1] = bnvtxs[0];bnvtxs[0] = 0;bxadj = idxmalloc(bnvtxs[2]+1, "ConstructMinCoverSeparator: bxadj");badjncy = idxmalloc(bnedges[0]+bnedges[1]+1, "ConstructMinCoverSeparator: badjncy");/* Construct the ivmap and vmap */ASSERT(idxset(nvtxs, -1, vmap) == vmap);for (i=0; i<nbnd; i++) {j = bndind[i];k = where[j];if (xadj[j+1]-xadj[j] > 0) {vmap[j] = bnvtxs[k];ivmap[bnvtxs[k]++] = j;}}/* OK, go through and put the vertices of each part starting from 0 */bnvtxs[1] = bnvtxs[0];bnvtxs[0] = 0;bxadj[0] = l = 0;for (k=0; k<2; k++) {for (ii=0; ii<nbnd; ii++) {i = bndind[ii];if (where[i] == k && xadj[i] < xadj[i+1]) {for (j=xadj[i]; j<xadj[i+1]; j++) {jj = adjncy[j];if (where[jj] != k) {ASSERT(bndptr[jj] != -1);ASSERTP(vmap[jj] != -1, ("%d %d %d\n", jj, vmap[jj], graph->bndptr[jj]));badjncy[l++] = vmap[jj];}}bxadj[++bnvtxs[k]] = l;}}}ASSERT(l <= bnedges[0]+bnedges[1]);MinCover(bxadj, badjncy, bnvtxs[0], bnvtxs[1], cover, &csize);IFSET(ctrl->dbglvl, DBG_SEPINFO,printf("Nvtxs: %6d, [%5d %5d], Cut: %6d, SS: [%6d %6d], Cover: %6d\n", nvtxs, graph->pwgts[0], graph->pwgts[1], graph->mincut, bnvtxs[0], bnvtxs[1]-bnvtxs[0], csize));for (i=0; i<csize; i++) {j = ivmap[cover[i]];where[j] = 2;}GKfree(&bxadj, &badjncy, LTERM);}else {IFSET(ctrl->dbglvl, DBG_SEPINFO,printf("Nvtxs: %6d, [%5d %5d], Cut: %6d, SS: [%6d %6d], Cover: %6d\n", nvtxs, graph->pwgts[0], graph->pwgts[1], graph->mincut, 0, 0, 0));}/* Prepare to refine the vertex separator */idxcopy(nvtxs, graph->where, vmap);GKfree(&graph->rdata, LTERM);Allocate2WayNodePartitionMemory(ctrl, graph);idxcopy(nvtxs, vmap, graph->where);idxwspacefree(ctrl, nvtxs+2*graph->nbnd);Compute2WayNodePartitionParams(ctrl, graph);ASSERT(CheckNodePartitionParams(graph));FM_2WayNodeRefine_OneSided(ctrl, graph, ubfactor, 6);ASSERT(IsSeparable(graph));}