R – /trunk/tests/reg-S4.R

Rev 88200 – fix typos, including from PR#18890

smeyer — Tue, 13 May 2025 11:22:34 +0000

smeyer – 33 file(s) modified
fix typos, including from PR#18890

~ /trunk/doc/html/NEWS.3.html
~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.1
~ /trunk/doc/NEWS.2
~ /trunk/doc/NEWS.3
~ /trunk/doc/NEWS.3.Rd
~ /trunk/src/library/datasets/man/penguins.Rd
~ /trunk/src/library/datasets/man/treering.Rd
~ /trunk/src/library/datasets/man/zCO2.Rd
~ /trunk/src/library/utils/man/untar.Rd
~ /trunk/tests/complex.R
~ /trunk/tests/complex.Rout.save
~ /trunk/tests/datetime2.R
~ /trunk/tests/datetime2.Rout.save
~ /trunk/tests/Embedding/Rpostscript.c
~ /trunk/tests/lapack.R
~ /trunk/tests/lapack.Rout.save
~ /trunk/tests/Pkgs/PR17501/man/donttest.Rd
~ /trunk/tests/print-tests.R
~ /trunk/tests/print-tests.Rout.save
~ /trunk/tests/reg-BLAS.R
~ /trunk/tests/reg-encodings.R
~ /trunk/tests/reg-large.R
~ /trunk/tests/reg-plot.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-1a.R
~ /trunk/tests/reg-tests-1b.R
~ /trunk/tests/reg-tests-1c.R
~ /trunk/tests/reg-tests-1d.R
~ /trunk/tests/reg-tests-1e.R
~ /trunk/tests/reg-tests-2.R
~ /trunk/tests/reg-tests-2.Rout.save

Rev 87079 – (cont.) 87062: even better " showMethods(....) " suggestion in show() ...

maechler — Fri, 30 Aug 2024 12:33:26 +0000

maechler – 5 file(s) modified
(cont.) 87062: even better " showMethods(....) " suggestion in show(<S4generic>) \\\ mv|clean "S4 tests"

~ /trunk/src/library/methods/R/RMethodUtils.R
~ /trunk/src/library/methods/R/show.R
~ /trunk/tests/classes-methods.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 87048 – tweak show(), fixing PR#18786 (thanks to Michael Chirico)

smeyer — Fri, 23 Aug 2024 11:34:19 +0000

smeyer – 3 file(s) modified
tweak show(<non-syntactic S4generic>), fixing PR#18786 (thanks to Michael Chirico)

~ /trunk/src/library/methods/R/show.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 86547 – fix sealClass() (PR#17496)

smeyer — Mon, 13 May 2024 19:27:55 +0000

smeyer – 3 file(s) modified
fix sealClass() (PR#17496)

~ /trunk/src/library/methods/R/SClasses.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 85659 – Start making the methods package more robust to not being ...

lawrence — Mon, 04 Dec 2023 17:02:12 +0000

lawrence – 9 file(s) modified
Start making the methods package more robust to not being on the search path

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/R/as.R
~ /trunk/src/library/methods/R/BasicClasses.R
~ /trunk/src/library/methods/R/ClassExtensions.R
~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/src/library/methods/R/zzz.R
~ /trunk/src/library/tools/R/QC.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 84954 – factor out the "Recomm.pkg" parts (and a bit more) from ...

maechler — Tue, 15 Aug 2023 13:03:27 +0000

maechler – 4 file(s) modified
factor out the "Recomm.pkg" parts (and a bit more) from reg-S4.R to new classes-methods.R

+ /trunk/tests/classes-methods.R
~ /trunk/tests/Makefile.common
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 84416 – fix typo in comment

maechler — Wed, 10 May 2023 10:53:56 +0000

maechler – 2 file(s) modified
fix typo in comment

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 82851 – update for Matrix 1.5-1

ripley — Wed, 14 Sep 2022 14:04:17 +0000

ripley – 5 file(s) modified
update for Matrix 1.5-1

~ /trunk/doc/manual/R-admin.texi
~ /trunk/tests/eval-etc-2.Rout.save
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-3.Rout.save

Rev 81437 – modernize some uses of structure()

ripley — Mon, 03 Jan 2022 18:41:43 +0000

ripley – 56 file(s) modified
modernize some uses of structure()

~ /trunk/src/library/base/man/tapply.Rd
~ /trunk/src/library/datasets/data/ability.cov.R
~ /trunk/src/library/datasets/data/airmiles.R
~ /trunk/src/library/datasets/data/AirPassengers.R
~ /trunk/src/library/datasets/data/attenu.R
~ /trunk/src/library/datasets/data/ChickWeight.R
~ /trunk/src/library/datasets/data/chickwts.R
~ /trunk/src/library/datasets/data/co2.R
~ /trunk/src/library/datasets/data/discoveries.R
~ /trunk/src/library/datasets/data/DNase.R
~ /trunk/src/library/datasets/data/esoph.R
~ /trunk/src/library/datasets/data/freeny.R
~ /trunk/src/library/datasets/data/Harman23.cor.R
~ /trunk/src/library/datasets/data/Harman74.cor.R
~ /trunk/src/library/datasets/data/Indometh.R
~ /trunk/src/library/datasets/data/infert.R
~ /trunk/src/library/datasets/data/InsectSprays.R
~ /trunk/src/library/datasets/data/islands.R
~ /trunk/src/library/datasets/data/LakeHuron.R
~ /trunk/src/library/datasets/data/Loblolly.R
~ /trunk/src/library/datasets/data/lynx.R
~ /trunk/src/library/datasets/data/nhtemp.R
~ /trunk/src/library/datasets/data/Orange.R
~ /trunk/src/library/datasets/data/OrchardSprays.R
~ /trunk/src/library/datasets/data/PlantGrowth.R
~ /trunk/src/library/datasets/data/precip.R
~ /trunk/src/library/datasets/data/presidents.R
~ /trunk/src/library/datasets/data/Puromycin.R
~ /trunk/src/library/datasets/data/Seatbelts.R
~ /trunk/src/library/datasets/data/state.R
~ /trunk/src/library/datasets/data/sunspots.R
~ /trunk/src/library/datasets/data/Theoph.R
~ /trunk/src/library/datasets/data/ToothGrowth.R
~ /trunk/src/library/datasets/data/UKDriverDeaths.R
~ /trunk/src/library/datasets/data/UKLungDeaths.R
~ /trunk/src/library/datasets/data/USAccDeaths.R
~ /trunk/src/library/datasets/data/USPersonalExpenditure.R
~ /trunk/src/library/datasets/data/uspop.R
~ /trunk/src/library/datasets/data/VADeaths.R
~ /trunk/src/library/datasets/data/volcano.R
~ /trunk/src/library/datasets/data/warpbreaks.R
~ /trunk/src/library/datasets/data/WorldPhones.R
~ /trunk/src/library/grDevices/R/hcl.colors.R
~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/src/library/stats/tests/NLSstClosest.R
~ /trunk/src/library/utils/R/windows/choose.files.R
~ /trunk/tests/Examples/stats-Ex.Rout.save
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-1a.R
~ /trunk/tests/reg-tests-1b.R
~ /trunk/tests/reg-tests-1c.R
~ /trunk/tests/reg-tests-1d.R
~ /trunk/tests/reg-tests-2.R
~ /trunk/tests/reg-tests-2.Rout.save
~ /trunk/tests/structure.Rout.save

Rev 81321 – need update for Matrix version 1.4-0

maechler — Fri, 10 Dec 2021 20:58:08 +0000

maechler – 3 file(s) modified
need update for Matrix version 1.4-0

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-translation.R

Rev 80298 – clean up as eval-etc-2.R is no longer run without Matrix

ripley — Sat, 15 May 2021 05:55:31 +0000

ripley – 4 file(s) modified
clean up as eval-etc-2.R is no longer run without Matrix

~ /trunk/tests/eval-etc-2.R
~ /trunk/tests/eval-etc-2.Rout.save
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 80296 – reduce chatter when checking without recommended packages

ripley — Fri, 14 May 2021 07:22:36 +0000

ripley – 18 file(s) modified
reduce chatter when checking without recommended packages

~ /trunk/src/library/methods/man/inheritedSlotNames.Rd
~ /trunk/src/library/parallel/tests/multicore2.RR
~ /trunk/src/library/parallel/tests/snow1.RR
~ /trunk/src/library/stats/tests/drop1-polr.R
~ /trunk/src/library/stats/tests/nls.R
~ /trunk/src/library/stats/tests/nls.Rout.save
~ /trunk/src/library/stats/tests/simulate.R
~ /trunk/src/library/stats/tests/simulate.Rout.save
~ /trunk/src/library/stats/tests/smooth.spline.R
~ /trunk/src/library/utils/man/methods.Rd
~ /trunk/src/library/utils/tests/swv-keepSrc-1.Rnw
~ /trunk/tests/eval-etc-2.R
~ /trunk/tests/eval-etc-2.Rout.save
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-1a.R
~ /trunk/tests/reg-tests-1b.R
~ /trunk/tests/reg-tests-1d.R

Rev 80264 – update for Matrix_1.3-3; drop print()out anyway

maechler — Thu, 06 May 2021 07:24:46 +0000

maechler – 2 file(s) modified
update for Matrix_1.3-3; drop print()out anyway

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 78570 – Replace use of R_tryEval() with approaches that don't create a ...

luke — Mon, 25 May 2020 19:47:07 +0000

luke – 4 file(s) modified
Replace use of R_tryEval() with approaches that don't create a new
R_ToplevelContext. Initial patch from Lionel Henry, with modifications
to avoid degrading performance. Details are in PR17618. Also resolves
PR=17806.

~ /trunk/src/library/base/R/conditions.R
~ /trunk/src/library/methods/src/methods_list_dispatch.c
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 77832 – tweak to ensure getting "correct" Matrix

maechler — Wed, 19 Feb 2020 21:14:06 +0000

maechler – 2 file(s) modified
tweak to ensure getting "correct" Matrix

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 77821 – fix c77801 to use simpler coercions again

lawrence — Tue, 18 Feb 2020 08:55:17 +0000

lawrence – 3 file(s) modified
fix c77801 to use simpler coercions again

~ /trunk/src/library/methods/R/SClasses.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 77806 – fix and reenable the test from r77801

lawrence — Sat, 15 Feb 2020 01:30:06 +0000

lawrence – 2 file(s) modified
fix and reenable the test from r77801

~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/tests/reg-S4.R

Rev 77804 – temporarily disable a test from r77801

lawrence — Fri, 14 Feb 2020 16:06:51 +0000

lawrence – 1 file(s) modified
temporarily disable a test from r77801

~ /trunk/tests/reg-S4.R

Rev 77801 – improve tracking inheritance across packages and fix bugs from c77631

lawrence — Thu, 13 Feb 2020 20:38:40 +0000

lawrence – 11 file(s) modified
improve tracking inheritance across packages and fix bugs from c77631

~ /trunk/doc/NEWS.Rd
~ /trunk/src/include/Rinternals.h
~ /trunk/src/library/methods/man/RClassUtils.Rd
~ /trunk/src/library/methods/R/ClassExtensions.R
~ /trunk/src/library/methods/R/ClassUnion.R
~ /trunk/src/library/methods/R/is.R
~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/src/library/methods/R/SClasses.R
~ /trunk/src/main/attrib.c
~ /trunk/src/main/objects.c
~ /trunk/tests/reg-S4.R

Rev 77383 – canCoerce() {+ another} should not assume length(class(.)) == 1

maechler — Thu, 07 Nov 2019 10:53:33 +0000

maechler – 6 file(s) modified
canCoerce() {+ another} should not assume length(class(.)) == 1

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/R/as.R
~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-1c.R

Rev 76046 – change warning to message in setClassUnion() when checking subclasses

maechler — Sat, 02 Feb 2019 11:20:39 +0000

maechler – 4 file(s) modified
change warning to message in setClassUnion() when checking subclasses

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 73724 – needed coerce method creation fixup resulting from deparse change in ...

maechler — Mon, 13 Nov 2017 21:17:29 +0000

maechler – 3 file(s) modified
needed coerce method creation fixup resulting from deparse change in c73699

~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 73103 – R_check_class_and_super() fix

maechler — Thu, 17 Aug 2017 13:30:37 +0000

maechler – 4 file(s) modified
R_check_class_and_super() fix

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/objects.c
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 72613 – fix dots dispatch when call has dots

lawrence — Mon, 24 Apr 2017 14:34:44 +0000

lawrence – 3 file(s) modified
fix dots dispatch when call has dots

~ /trunk/src/library/methods/R/RMethodUtils.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 72578 – fix callNextMethod() for dots methods

lawrence — Fri, 21 Apr 2017 16:23:34 +0000

lawrence – 4 file(s) modified
fix callNextMethod() for dots methods

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/R/NextMethod.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 72556 – fix rematching S4 methods that override generic default with NULL

lawrence — Wed, 19 Apr 2017 22:19:21 +0000

lawrence – 4 file(s) modified
fix rematching S4 methods that override generic default with NULL

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/R/RMethodUtils.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 72550 – add regression test for Ops,structure infinite recursion bug

lawrence — Wed, 19 Apr 2017 14:47:29 +0000

lawrence – 2 file(s) modified
add regression test for Ops,structure infinite recursion bug

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 72437 – fix callNextMethod() from primitive methods that augment the generic formals

lawrence — Wed, 29 Mar 2017 16:39:47 +0000

lawrence – 3 file(s) modified
fix callNextMethod() from primitive methods that augment the generic formals

~ /trunk/src/library/methods/R/NextMethod.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 72422 – fix dispatch with as.vector() when coercing S4 to vector during ...

lawrence — Mon, 27 Mar 2017 16:41:37 +0000

lawrence – 2 file(s) modified
fix dispatch with as.vector() when coercing S4 to vector during subassignment

~ /trunk/src/main/subassign.c
~ /trunk/tests/reg-S4.R

Rev 71946 – pmin(x) & pmax, e.g., for Matrix with NA`s -- see ...

maechler — Mon, 09 Jan 2017 16:23:29 +0000

maechler – 3 file(s) modified
pmin(x) & pmax, e.g., for Matrix with NA`s -- see PR#17195, comment 10

~ /trunk/src/library/base/R/pmax.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 71279 – split .getClassFromCache() into two pieces (cleaner and faster in simple/common ...

lawrence — Fri, 16 Sep 2016 21:14:58 +0000

lawrence – 3 file(s) modified
split .getClassFromCache() into two pieces (cleaner and faster in
simple/common case due to less argument passing), thanks to Pete Haverty

~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/src/library/methods/R/SClasses.R
~ /trunk/tests/reg-S4.R

Rev 71023 – improve pmin() and pmax()`s implementation for is.object(.) case

maechler — Wed, 03 Aug 2016 13:13:43 +0000

maechler – 5 file(s) modified
improve pmin() and pmax()`s implementation for is.object(.) case

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/base/man/Extremes.Rd
~ /trunk/src/library/base/R/pmax.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 70727 – add some regression tests for recent bug fixes

lawrence — Wed, 08 Jun 2016 03:53:20 +0000

lawrence – 5 file(s) modified
add some regression tests for recent bug fixes

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-1c.R
~ /trunk/tests/reg-tests-3.R
~ /trunk/tests/reg-tests-3.Rout.save

Rev 70275 – getGeneric("as.vector") should have identical formals as the base function

maechler — Fri, 04 Mar 2016 13:39:41 +0000

maechler – 3 file(s) modified
getGeneric("as.vector") should have identical formals as the base function

~ /trunk/src/library/methods/R/BasicFunsList.R
~ /trunk/src/library/methods/R/makeBasicFunsList.R
~ /trunk/tests/reg-S4.R

Rev 69880 – fix long standing callingHandler-S4 bug PR 16111

maechler — Wed, 06 Jan 2016 11:03:12 +0000

maechler – 4 file(s) modified
fix long standing callingHandler-S4 bug PR 16111

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/src/methods_list_dispatch.c
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 69761 – disable is.unsorted internal generic for now

lawrence — Sat, 12 Dec 2015 14:21:19 +0000

lawrence – 5 file(s) modified
disable is.unsorted internal generic for now

~ /trunk/src/library/methods/man/setGeneric.Rd
~ /trunk/src/library/methods/R/makeBasicFunsList.R
~ /trunk/tests/primitives.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 69748 – fixes for internal dispatch; internal generics use the formals of ...

lawrence — Wed, 09 Dec 2015 14:07:49 +0000

lawrence – 6 file(s) modified
fixes for internal dispatch; internal generics use the formals
of the internal, not the wrapping closure

~ /trunk/src/library/methods/R/BasicFunsList.R
~ /trunk/src/library/methods/R/makeBasicFunsList.R
~ /trunk/src/library/methods/R/Methods.R
~ /trunk/src/library/methods/R/trace.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 69636 – support S4 dispatch for "internal" non-primitive generics

lawrence — Sat, 14 Nov 2015 20:18:48 +0000

lawrence – 16 file(s) modified
support S4 dispatch for "internal" non-primitive generics

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/methods/man/setGeneric.Rd
~ /trunk/src/library/methods/man/setMethod.Rd
~ /trunk/src/library/methods/R/BasicFunsList.R
~ /trunk/src/library/methods/R/makeBasicFunsList.R
~ /trunk/src/library/methods/R/Methods.R
~ /trunk/src/library/methods/R/MethodsList.R
~ /trunk/src/library/methods/R/MethodsListClass.R
~ /trunk/src/library/methods/R/NextMethod.R
~ /trunk/src/library/methods/R/RMethodUtils.R
~ /trunk/src/library/methods/src/methods_list_dispatch.c
~ /trunk/src/main/objects.c
~ /trunk/src/main/sort.c
~ /trunk/tests/primitives.R
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 69479 – fixing bug PR#16545 - slot assignment when `methods` is detached

maechler — Tue, 06 Oct 2015 12:12:39 +0000

maechler – 5 file(s) modified
fixing bug PR#16545 - slot assignment when `methods` is detached

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/attrib.c
~ /trunk/src/main/eval.c
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save

Rev 69046 – update (from r69041)

maechler — Thu, 13 Aug 2015 21:14:47 +0000

maechler – 2 file(s) modified
update (from r69041)

~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save