The R Project SVN R

\name{setClass}
\alias{setClass}
\alias{removeClass}
\alias{resetClass}
\alias{isClass}
\alias{getClasses}
\alias{findClass}
\title{Create a Class Definition}
\description{
  Create a formally defined class with specified slots and/or
  relationships to other classes.  Also functions to remove a class
  definition, to test whether a class has been defined, to test whether
  an object is a class definition, and to reset the internal definition
  of a class.
}
\usage{
setClass(Class, representation, prototype, contains=character(), validity, 
         access, where=1, version=FALSE, sealed, package)

removeClass(Class, where=-1, removeSubclassLinks = TRUE)

isClass(Class, formal=TRUE)
isClassDef(object)

getClasses(where)

findClass(Class)

resetClass(Class, resetSubclasses = TRUE)

}
\arguments{
  \item{Class}{ character string name for the class }
  \item{representation}{ the slots that the new class should have
    and/or other classes that this class extends.  Usually a call to
    the \code{\link{representation}} function. }
  \item{prototype}{ an object (usually a list) providing the default
    data for the slots specified in the representation. }
  \item{contains}{ what classes does this class extend?  (These are
    called \emph{superclasses} in some languages.)  When these classes
    have slots, all their slots will be contained in the new class as
    well. }
  \item{where}{ What environment to use to store or remove the
    definition (as metadata).
    By default, uses the global environment for \code{setClass} and
    searches for a definition to remove, for \code{removeClass}. }
  \item{validity, access, version}{ Control arguments included for
    compatibility with the S-Plus API, but not currently used.  }
  \item{sealed}{ If \code{TRUE}, the class definition will be sealed,
    so that another call to \code{setClass} will fail on this class name.
    }
  \item{package}{ An optional package name for the class.  By default
  (and usually) the package where the class definition is assigned
  will be used.
    }
  \item{formal}{ Should a formal definition be required? }
  \item{object}{ any R object. }

  \item{removeSubclassLinks}{When a class is removed, any links
      \emph{to} that class from other classes will become invalid.  If
      this argument is not supplied as \code{FALSE}, then
      \code{removeClass} will search for all such links and delete
      them. You can omit the  argument, or supply it as the
      positions in the search list to look for these links (by default
      all attached object tables will be searched).}
  \item{resetSubclasses}{
      Should \code{resetClass} also reset all known
    subclasses.  Usually \code{TRUE}, unless you know from the context
    these will be reset elsewhere.

    }
}
\details{

  These are the functions that create and manipulate formal class
  definitions.  Brief documentation is provided below.  See the
  references for an introduction and for more details.
 
  \describe{ 
    \item{\code{setClass}:}{ 
      Define \code{Class} to be an S-style class.  The effect is to
      create an object, of class \code{"classRepEnvironment"}, and store
      this (hidden) in the specified environment or database.  Objects
      can be created from the class (e.g., by calling
      \code{\link{new}}), manipulated (e.g., by accessing the object's
      slots), and methods may be defined including the class name in the
      signature (see \code{\link{setMethod}}).
    }

    \item{\code{removeClass}:}{ 
      Remove the definition of this class.  Calling this \emph{always}
      resets the version of the class cached for the session.  If
      \code{where=0}, that's all it does.  Otherwise, it removes the
      version from the specified environment or database (from the global
      environment by default).
    }
  
    \item{\code{isClass}:}{ 
      Is this a the name of a formally defined class? (Argument
      \code{formal} is for compatibility and is ignored.)
    }

    \item{\code{isClassDef}:}{ 
      Is this object a class definition (it will be, for example, if it
      is the value of a call to \code{\link{getClass}}, the complete
      definition of a class with its extensions, or to
      \code{\link{getClassDef}}, the local definition of the class).
    }

    \item{\code{getClasses}:}{
      The names of all the classes formally defined on \code{where}.  If
      called with no argument, all the classes currently known in the
      session (which does not include classes that may be defined on one
      of the attached packages, but have not yet been used in the
      session).
    }
    \item{\code{findClass}:}{
        Where on the current search list the class named \code{Class}
        is defined.  (If there is more than one definition, all
        corresponding elements of the search list are returned.)
    }

    \item{\code{unclass}:}{
      Returns the object containing the values of all the slots in this
      object's class definition (specifically, if the returned object
      has attributes corresponding to each slot), in the case that the
      object's class is formally defined with slots.  For classes that
      extend a single other class (e.g., a basic class such as
      \code{"numeric"}) the result is an object of that class.
    }
    
    \item{\code{resetClass}:}{
      Reset the internal definition of a class.  The effect is that
      the next time the definition of this class is needed, it will be
      recomputed from the information in the currently attached packages.

      This function is called when aspects of the class definition are
      changed.  You would need to call it explicitly if you changed the
      definition of a class that this class extends (but doing that in
      the  middle of a session is living dangerously, since it may
      invalidate existing objects).

    }
  }
}
\section{Inheritance and Prototypes}{
  Defining new classes that inherit from (``extend'') other classes is a
  powerful technique, but has to be used carefully and not over-used.
  Otherwise, you will often get unintended results when you start to
  compute with objects from the new class.

  As shown in the examples below, the simplest and safest form of
  inheritance is to start with an explicit class, with some slots, that
  does not extend anything else.  It only does what we say it does.

  Then extensions will add some new slots and new behavior.

  Another variety of extension starts with one of the basic classes,
  perhaps with the intension of modifying R's standard behavior for that
  class.  Perfectly legal and sometimes quite helpful, but you may need
  to be more careful in this case:  your new class will inherit much of
  the behavior of the basic (informally defined) class, and the results
  can be surprising.  Just proceed with caution and plenty of testing.

  As an example, the class \code{"matrix"} is included in the
  pre-defined classes, to behave essentially as matrices do without
  formal class definitions.  Suppose we don't like all of this; in
  particular, we want the default matrix to have 0 rows and columns (not
  1 by 1 as it is now).
  
  \code{setClass("myMatrix", "matrix", prototype = matrix(0,0,0))}
  
  The arguments above illustrate two short-cuts relevant to such
  examples.  We abbreviated the \code{representation} argument to the
  single superclass, because the new class doesn't add anything to the
  representation of class \code{"matrix"}.  Also, we provided an object
  from the superclass as the prototype, not a list of slots.
}

\references{
  The R package \code{methods} implements, with a few exceptions, the
  programming interface for classes
  and methods in the book \emph{Programming with Data} (John
  M. Chambers, Springer, 1998), in particular sections 1.6, 2.7, 2.8,
  and chapters 7 and 8.

  While the programming interface for the methods package follows the reference,
  the R software is an original implementation, so details in
  the reference that reflect the S4 implementation may appear
  differently in R.  Also, there are extensions to the programming
  interface developed more recently than the reference.  For a
  discussion of details and ongoing development, see the web page 
  \url{http://developer.r-project.org/methodsPackage.html} and the
  pointers from that page.
}
\examples{
\testonly{
if(isClass("trackMultiCurve"))
  removeClass("trackMultiCurve")
if(isClass("trackCurve"))
  removeClass("trackCurve")
if(isClass("track"))
  removeClass("track")
}
## A simple class with two slots
setClass("track",
            representation(x="numeric", y="numeric"))
## A class extending the previous, adding one more slot
setClass("trackCurve",
            representation("track", smooth = "numeric"))
## A class similar to "trackCurve", but with different structure
## allowing matrices for the "y" and "smooth" slots
setClass("trackMultiCurve", representation(x="numeric", y="matrix", smooth="matrix"),
          prototype = list(x=numeric(), y=matrix(0,0,0), smooth= matrix(0,0,0)))
##
## Suppose we want  trackMultiCurve to be like trackCurve when there's only
## one column
## First, the wrong way. 
try(setIs("trackMultiCurve", "trackCurve",
  test = function(obj) {ncol(slot(obj, "y")) == 1}))

## why didn't that work?  You can only override the slots "x", "y", and "smooth"
## if you provide an explicit coerce function to correct any inconsistencies:

setIs("trackMultiCurve", "trackCurve",
  test = function(obj) {ncol(slot(obj, "y")) == 1},
  coerce = function(obj) { new("trackCurve", x = slot(obj, "x"),
        y = as.numeric(slot(obj,"y")), smooth = as.numeric(slot(obj, "smooth")))})
\testonly{
tMC <- new("trackMultiCurve")
is.matrix(slot(tMC, "y"))
is.matrix(slot(tMC, "smooth"))
setClass("myMatrix", "matrix", prototype = matrix(0,0,0))
nrow(new("myMatrix")) # 0
nrow(new("matrix")) # 1
## simple test of prototype data
xxx <- rnorm(3)
setClass("xNum", representation(x = "numeric"), prototype = list(x = xxx))
stopifnot(identical(new("xNum")@x, xxx))

## extending a virtual class with several possible realizations
## Used to result in a recursive loop through as()
## (in S-Plus 6.0, new() doesn't work right with this class)

setClass("maybeNumber")
setIs("numeric", "maybeNumber")
setIs("logical", "maybeNumber")
setClass("withId", representation("maybeNumber", id = "character"))

ttt <- 1:10 ## relevant that this is class integer, to test indirect extensions
www <- new("withId", ttt, id = "test 1")

## the following test is less trivial than it looks.
## It depends on the assignment of the data part NOT performing
## a strict coerce to "numeric" on the way to satisfying is(ttt, "maybeNumber").
stopifnot(identical(www@.Data, ttt))

### tests of the C macros MAKE_CLASS and NEW
### FIXME:  there should be a separate man page for the C-level macros
### and the tests below should be there.
stopifnot(identical(.Call("R_methods_test_MAKE_CLASS", "trackCurve", PACKAGE = "methods"),
                    getClass("trackCurve")))

stopifnot(identical(.Call("R_methods_test_NEW", "track", PACKAGE = "methods"),
                    new("track")))


## The following should not be needed.  But make check removes all files
## between example files, in a crude way that does not cause the class
## information to be reset.  There seems no way to detect this, so we
## have to remove classes ourselves

removeClass("withId")
removeClass("maybeNumber")
removeClass("xNum")
removeClass("myMatrix")
resetClass("integer")
resetClass("numeric")
resetClass("logical")
  removeClass("trackMultiCurve")
  removeClass("trackCurve")
  removeClass("track")


}


}

\seealso{\code{\link{Methods}}, \code{\link{makeClassRepresentation}}}
\keyword{programming}
\keyword{classes}
\keyword{methods}