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% File src/library/graphics/man/plotdefault.Rd

% Part of the R package, http://www.R-project.org

% Copyright 1995-2012 R Core Team

% Distributed under GPL 2 or later

\name{plot.default}

\alias{plot.default}

\title{The Default Scatterplot Function}

\description{

  Draw a scatter plot with decorations such as axes and titles

  in the active graphics window.

}

\usage{

\method{plot}{default}(x, y = NULL, type = "p",  xlim = NULL, ylim = NULL,

     log = "", main = NULL, sub = NULL, xlab = NULL, ylab = NULL,

     ann = par("ann"), axes = TRUE, frame.plot = axes,

     panel.first = NULL, panel.last = NULL, asp = NA, \dots)

}

\arguments{

  \item{x, y}{the \code{x} and \code{y} arguments provide the x and y

    coordinates for the plot.  Any reasonable way of defining the

    coordinates is acceptable.  See the function \code{\link{xy.coords}}

    for details.  If supplied separately, they must be of the same length.}

  \item{type}{1-character string giving the type of plot desired.  The

    following values are possible, for details, see \code{\link{plot}}:

    \code{"p"} for points, \code{"l"} for lines,

    \code{"b"} for both points and lines,

    \code{"c"} for empty points joined by lines,

    \code{"o"} for overplotted points and lines,

    \code{"s"} and \code{"S"} for stair steps and

    \code{"h"} for histogram-like vertical lines.  Finally,

    \code{"n"} does not produce any points or lines.}

  \item{xlim}{the x limits (x1, x2) of the plot.  Note that \code{x1 > x2}

    is allowed and leads to a \sQuote{reversed axis}.

    The default value, \code{NULL}, indicates that the range of the

    \link{finite} values to be plotted should be used.}

  \item{ylim}{the y limits of the plot.}

  \item{log}{a character string which contains \code{"x"} if the x axis

    is to be logarithmic, \code{"y"} if the y axis is to be logarithmic

    and \code{"xy"} or \code{"yx"} if both axes are to be logarithmic.}

  \item{main}{a main title for the plot, see also \code{\link{title}}.}

  \item{sub}{a sub title for the plot.}

  \item{xlab}{a label for the x axis, defaults to a description of \code{x}.}

  \item{ylab}{a label for the y axis, defaults to a description of \code{y}.}

  \item{ann}{a logical value indicating whether the default annotation

    (title and x and y axis labels) should appear on the plot.}

  \item{axes}{a logical value indicating whether both axes should be drawn on

    the plot.  Use \link{graphical parameter} \code{"xaxt"} or \code{"yaxt"}

    to suppress just one of the axes.}

  \item{frame.plot}{a logical indicating whether a box should be drawn

    around the plot.}

  \item{panel.first}{an \sQuote{expression} to be evaluated after the

    plot axes are set up but before any plotting takes place.  This can

    be useful for drawing background grids or scatterplot smooths.  Note

    that this works by lazy evaluation: passing this argument from other

    \code{plot} methods may well not work since it may be evaluated too

    early.}

  \item{panel.last}{an expression to be evaluated after plotting has

    taken place but before the axes, title and box are added.  See the

    comments about \code{panel.first}.}

  \item{asp}{the \eqn{y/x} aspect ratio, see \code{\link{plot.window}}.}

  \item{\dots}{other \link{graphical parameters} (see \code{\link{par}} and

    section \sQuote{Details} below).}

}

\details{

  Commonly used \link{graphical parameters} are:

  \describe{

    \item{\code{col}}{The colors for lines and points.  Multiple colors can be

      specified so that each point can be given its own color.  If there

      are fewer colors than points they are recycled in the standard

      fashion.  Lines will all be plotted in the first colour specified.}

    \item{\code{bg}}{a vector of background colors for open plot symbols, see

      \code{\link{points}}.  Note: this is \bold{not} the same setting

      as \code{\link{par}("bg")}.}

    \item{\code{pch}}{a vector of plotting characters or symbols:

      see \code{\link{points}}.}

    \item{\code{cex}}{a numerical vector giving the amount by which

      plotting characters and symbols should be scaled relative to the

      default.  This works as a multiple of \code{\link{par}("cex")}.

      \code{NULL} and \code{NA} are equivalent to \code{1.0}.  Note that

      this does not affect annotation: see below.}

    \item{\code{lty}}{a vector of line types, see \code{\link{par}}.}

    \item{\code{cex.main}, \code{col.lab}, \code{font.sub},

      etc}{settings for main- and sub-title and axis annotation, see

      \code{\link{title}} and \code{\link{par}}.}

    \item{\code{lwd}}{a vector of line widths, see \code{\link{par}}.}

  }

}

\note{

  The presence of \code{panel.first} and \code{panel.last} is a

  historical anomaly: default plots do not have \sQuote{panels}, unlike

  e.g. \code{\link{pairs}} plots.  For more control, use lower-level

  plotting functions: \code{plot.default} calls in turn some of

  \code{\link{plot.new}}, \code{\link{plot.window}},

  \code{\link{plot.xy}}, \code{\link{axis}}, \code{\link{box}} and

  \code{\link{title}}, and plots can be built up by calling these

  individually, or by calling \code{plot(type = "n")} and adding further

  elements.

}

\references{

  Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988)

  \emph{The New S Language}.

  Wadsworth & Brooks/Cole.

  Cleveland, W. S. (1985)

  \emph{The Elements of Graphing Data.}

  Monterey, CA: Wadsworth.

  Murrell, P. (2005) \emph{R Graphics}. Chapman & Hall/CRC Press.

}

\seealso{

  \code{\link{plot}}, \code{\link{plot.window}}, \code{\link{xy.coords}}.

}

\examples{

Speed <- cars$speed

Distance <- cars$dist

plot(Speed, Distance, panel.first = grid(8, 8),

     pch = 0, cex = 1.2, col = "blue")

plot(Speed, Distance,

     panel.first = lines(stats::lowess(Speed, Distance), lty = "dashed"),

     pch = 0, cex = 1.2, col = "blue")

## Show the different plot types

x <- 0:12

y <- sin(pi/5 * x)

op <- par(mfrow = c(3,3), mar = .1+ c(2,2,3,1))

for (tp in c("p","l","b",  "c","o","h",  "s","S","n")) {

   plot(y ~ x, type = tp, main = paste0("plot(*, type = \"", tp, "\")"))

   if(tp == "S") {

      lines(x, y, type = "s", col = "red", lty = 2)

      mtext("lines(*, type = \"s\", ...)", col = "red", cex = 0.8)

   }

}

par(op)

##--- Log-Log Plot  with  custom axes

lx <- seq(1, 5, length = 41)

yl <- expression(e^{-frac(1,2) * {log[10](x)}^2})

y <- exp(-.5*lx^2)

op <- par(mfrow = c(2,1), mar = par("mar")+c(0,1,0,0))

plot(10^lx, y, log = "xy", type = "l", col = "purple",

     main = "Log-Log plot", ylab = yl, xlab = "x")

plot(10^lx, y, log = "xy", type = "o", pch = ".", col = "forestgreen",

     main = "Log-Log plot with custom axes", ylab = yl, xlab = "x",

     axes = FALSE, frame.plot = TRUE)

my.at <- 10^(1:5)

axis(1, at = my.at, labels = formatC(my.at, format = "fg"))

at.y <- 10^(-5:-1)

axis(2, at = at.y, labels = formatC(at.y, format = "fg"), col.axis = "red")

par(op)

}

\keyword{hplot}