R – /trunk/doc/NEWS.Rd

Rev 63241 – Tell emacs to use sh mode mention differences in gs ...

ripley — Tue, 09 Jul 2013 14:34:25 +0000

ripley – 3 file(s) modified
Tell emacs to use sh mode
mention differences in gs versions
clarify which part of kmeans

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/scripts/javareconf

Rev 63240 – tweak wording

ripley — Tue, 09 Jul 2013 14:31:25 +0000

ripley – 1 file(s) modified
tweak wording

~ /trunk/doc/NEWS.Rd

Rev 63234 – up the xz requirement to 5.0.3, as there are known ...

ripley — Tue, 09 Jul 2013 10:24:23 +0000

ripley – 5 file(s) modified
up the xz requirement to 5.0.3, as there are known issues with 5.0.2.
Simon supplies 5.0.3 for OS X, and most Linux distros are on 5.1.?alpha

~ /trunk/configure
~ /trunk/doc/manual/R-admin.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/m4/R.m4
~ /trunk/src/include/config.h.in

Rev 63232 – update minimal version for xz

ripley — Tue, 09 Jul 2013 09:30:10 +0000

ripley – 3 file(s) modified
update minimal version for xz

~ /trunk/doc/manual/R-admin.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/m4/R.m4

Rev 63230 – update xz to 5.0.5

ripley — Tue, 09 Jul 2013 09:07:17 +0000

ripley – 8 file(s) modified
update xz to 5.0.5

~ /trunk/doc/manual/R-admin.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/extra/xz/api/lzma/version.h
~ /trunk/src/extra/xz/check/sha256.c
~ /trunk/src/extra/xz/common/alone_decoder.c
~ /trunk/src/extra/xz/common/alone_decoder.h
~ /trunk/src/extra/xz/common/auto_decoder.c
~ /trunk/src/extra/xz/R_changes

Rev 63217 – expand what R CMD config --ldflags returns

ripley — Mon, 08 Jul 2013 09:54:58 +0000

ripley – 5 file(s) modified
expand what R CMD config --ldflags returns

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/scripts/config
~ /trunk/src/unix/libR.pc.in
~ /trunk/src/unix/Makefile.in

Rev 63200 – read.dcf could overrun buffer

ripley — Sat, 06 Jul 2013 13:43:18 +0000

ripley – 2 file(s) modified
read.dcf could overrun buffer

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/dcf.c

Rev 63197 – Added assertWarning(), assertError(), changed returned values to be the conditions ...

jmc — Fri, 05 Jul 2013 22:20:00 +0000

jmc – 4 file(s) modified
Added assertWarning(), assertError(), changed returned values to be the
conditions signalled. Fixed problems with deparsing {}'d expressions.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/man/assertCondition.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/assertCondition.R

Rev 63179 – Profiling now records calls to BUILTIN functions from byte compiled ...

luke — Thu, 04 Jul 2013 16:30:58 +0000

luke – 2 file(s) modified
Profiling now records calls to BUILTIN functions from byte compiled code.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/eval.c

Rev 63172 – document change of return value, which broke DierckxSpline. doX could ...

ripley — Thu, 04 Jul 2013 07:53:15 +0000

ripley – 3 file(s) modified
document change of return value, which broke DierckxSpline.
doX could have been NA, and was in 9 packages.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/stats/man/uniroot.Rd
~ /trunk/src/library/stats/R/nlm.R

Rev 63170 – document use of stats::model.frame etc

ripley — Thu, 04 Jul 2013 06:33:56 +0000

ripley – 1 file(s) modified
document use of stats::model.frame etc

~ /trunk/doc/NEWS.Rd

Rev 63162 – merged unirootS() into uniroot(), remaining back compatible; more to ...

maechler — Wed, 03 Jul 2013 08:47:22 +0000

maechler – 5 file(s) modified
merged unirootS() into uniroot(), remaining back compatible;
more to come (not the next couple of days, tough)

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/stats/man/uniroot.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/nlm.R
~ /trunk/tests/Examples/stats-Ex.Rout.save

Rev 63147 – fix parent of methods invoked by NextMethod (PR#15267)

pd — Tue, 02 Jul 2013 13:54:15 +0000

pd – 2 file(s) modified
fix parent of methods invoked by NextMethod (PR#15267)

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/objects.c

Rev 63140 – update info, grammar

ripley — Tue, 02 Jul 2013 10:11:31 +0000

ripley – 2 file(s) modified
update info, grammar

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.Rd

Rev 63123 – kmeans(.) stop infinite loop: PR#15364; other cosmetic

maechler — Mon, 01 Jul 2013 10:01:51 +0000

maechler – 5 file(s) modified
kmeans(.) stop infinite loop: PR#15364; other cosmetic

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/stats/man/kmeans.Rd
~ /trunk/src/library/stats/R/kmeans.R
~ /trunk/src/library/stats/src/kmeans.c
~ /trunk/src/library/stats/src/kmns.f

Rev 63113 – Fix missed duplicate() calls in PR#15352-15354

murdoch — Sun, 30 Jun 2013 13:33:19 +0000

murdoch – 6 file(s) modified
Fix missed duplicate() calls in PR#15352-15354

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/stats/src/nls.c
~ /trunk/src/main/envir.c
~ /trunk/src/main/seq.c
~ /trunk/tests/reg-tests-3.R
~ /trunk/tests/reg-tests-3.Rout.save

Rev 63110 – more on parallel testing

ripley — Sun, 30 Jun 2013 09:20:41 +0000

ripley – 7 file(s) modified
more on parallel testing

~ /trunk/doc/manual/R-admin.texi
~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/man/testInstalledPackage.Rd
~ /trunk/tests/Makefile.common
~ /trunk/tests/Makefile.in
~ /trunk/tests/Makefile.win

Rev 63105 – Fix deparsing of strange expressions. (PR#15350)

murdoch — Sat, 29 Jun 2013 22:54:54 +0000

murdoch – 2 file(s) modified
Fix deparsing of strange expressions. (PR#15350)

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/deparse.c

Rev 63103 – Fix PR#15370, bad extension on JPEG file in Sweave

murdoch — Sat, 29 Jun 2013 20:37:58 +0000

murdoch – 2 file(s) modified
Fix PR#15370, bad extension on JPEG file in Sweave

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/utils/R/SweaveDrivers.R

Rev 63102 – .Call does not use names minor tweaks

ripley — Sat, 29 Jun 2013 17:19:02 +0000

ripley – 3 file(s) modified
.Call does not use names
minor tweaks

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/stats/R/lsfit.R
~ /trunk/src/main/arithmetic.c

Rev 63100 – more docs on parallel testing

ripley — Sat, 29 Jun 2013 14:53:49 +0000

ripley – 1 file(s) modified
more docs on parallel testing

~ /trunk/doc/NEWS.Rd

Rev 63098 – some parallel checking

ripley — Sat, 29 Jun 2013 12:34:01 +0000

ripley – 2 file(s) modified
some parallel checking

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/R/testing.R

Rev 63096 – Deparse raw vectors in syntactically correct way (PR#15369)

murdoch — Sat, 29 Jun 2013 11:54:48 +0000

murdoch – 6 file(s) modified
Deparse raw vectors in syntactically correct way (PR#15369)

~ /trunk/doc/NEWS.Rd
~ /trunk/src/include/Defn.h
~ /trunk/src/main/deparse.c
~ /trunk/src/main/printarray.c
~ /trunk/src/main/printutils.c
~ /trunk/src/main/printvector.c

Rev 63093 – catch up with R-patched

ripley — Sat, 29 Jun 2013 05:33:08 +0000

ripley – 1 file(s) modified
catch up with R-patched

~ /trunk/doc/NEWS.Rd

Rev 63082 – deprecate hclust

ripley — Fri, 28 Jun 2013 09:04:51 +0000

ripley – 7 file(s) modified
deprecate hclust

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/stats/man/hclust.Rd
~ /trunk/src/library/stats/man/stats-deprecated.Rd
~ /trunk/src/library/stats/R/hclust.R
~ /trunk/src/library/stats/R/stats-deprecated.R
~ /trunk/src/library/tools/R/QC.R
~ /trunk/tests/Examples/stats-Ex.Rout.save

Rev 63079 – weave and tangle collide with the TeX commands, so drop ...

murdoch — Thu, 27 Jun 2013 18:45:16 +0000

murdoch – 7 file(s) modified
weave and tangle collide with the TeX commands, so drop them.
Maybe they should be called Rweave and Rtangle; that could be done by reversing this change, and doing some s/S/R/ editing.

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/manual/R-intro.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/gnuwin32/front-ends/rcmdfn.c
~ /trunk/src/library/utils/R/Sweave.R
x /trunk/src/scripts/tangle
x /trunk/src/scripts/weave

Rev 63076 – Introduce buildVignette() and weave and tangle utilities.

murdoch — Thu, 27 Jun 2013 16:38:33 +0000

murdoch – 11 file(s) modified
Introduce buildVignette() and weave and tangle utilities.

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/manual/R-intro.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/gnuwin32/front-ends/rcmdfn.c
+ /trunk/src/library/tools/man/buildVignette.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/Vignettes.R
~ /trunk/src/library/utils/man/Sweave.Rd
~ /trunk/src/library/utils/R/Sweave.R
+ /trunk/src/scripts/tangle (copied from /trunk/src/scripts/Stangle@63075)
+ /trunk/src/scripts/weave (copied from /trunk/src/scripts/Sweave@63075)

Rev 63065 – Raise an error on log(base=4), round(digits=4), etc. (PR#15361)

murdoch — Wed, 26 Jun 2013 01:27:26 +0000

murdoch – 2 file(s) modified
Raise an error on log(base=4), round(digits=4), etc. (PR#15361)

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/arithmetic.c

Rev 63063 – parallel: avoid broken pipes by re-routing to /dev/null instead of ...

urbaneks — Tue, 25 Jun 2013 22:07:34 +0000

urbaneks – 7 file(s) modified
parallel: avoid broken pipes by re-routing to /dev/null instead of closing stdout

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/parallel/R/unix/mcfork.R
~ /trunk/src/library/parallel/R/unix/mclapply.R
~ /trunk/src/library/parallel/R/unix/mcparallel.R
~ /trunk/src/library/parallel/src/fork.c
~ /trunk/src/library/parallel/src/init.c
~ /trunk/src/library/parallel/src/parallel.h

Rev 63062 – new assertCondition() from John Chambers

maechler — Tue, 25 Jun 2013 21:38:14 +0000

maechler – 11 file(s) modified
new assertCondition() from John Chambers

~ /trunk/doc/NEWS.Rd
+ /trunk/src/library/tools/man/assertCondition.Rd
~ /trunk/src/library/tools/NAMESPACE
+ /trunk/src/library/tools/R/assertCondition.R
~ /trunk/tests/Examples/tools-Ex.Rout.save
~ /trunk/tests/reg-S4.R
~ /trunk/tests/reg-S4.Rout.save
~ /trunk/tests/reg-tests-1a.R
~ /trunk/tests/reg-tests-1b.R
~ /trunk/tests/reg-tests-2.R
~ /trunk/tests/reg-tests-2.Rout.save

Rev 63060 – Fix return value from svd() (PR#15360)

murdoch — Tue, 25 Jun 2013 19:30:16 +0000

murdoch – 2 file(s) modified
Fix return value from svd() (PR#15360)

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/base/R/svd.R

Rev 63053 – Message about minor error message fixes.

murdoch — Tue, 25 Jun 2013 13:35:08 +0000

murdoch – 1 file(s) modified
Message about minor error message fixes.

~ /trunk/doc/NEWS.Rd

Rev 63043 – Bad warning message

murdoch — Tue, 25 Jun 2013 00:15:23 +0000

murdoch – 4 file(s) modified
Bad warning message

~ /trunk/doc/NEWS.Rd
~ /trunk/src/main/subset.c
~ /trunk/tests/reg-tests-2.R
~ /trunk/tests/reg-tests-2.Rout.save

Rev 63033 – make R CMD build --no-vignettes defunct

ripley — Mon, 24 Jun 2013 12:03:07 +0000

ripley – 2 file(s) modified
make R CMD build --no-vignettes defunct

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/R/build.R

Rev 63030 – R CMD check --no-rebuild-vignettes is defunct

ripley — Mon, 24 Jun 2013 10:55:18 +0000

ripley – 1 file(s) modified
R CMD check --no-rebuild-vignettes is defunct

~ /trunk/doc/NEWS.Rd

Rev 63027 – ignore BuildVignettes: no for FOSS packages with - CMD check ...

ripley — Mon, 24 Jun 2013 10:48:30 +0000

ripley – 3 file(s) modified
ignore BuildVignettes: no for FOSS packages with - CMD check --as-cran

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/R/check.R

Rev 63025 – Second attempt at parser memory revision.

murdoch — Sun, 23 Jun 2013 21:10:52 +0000

murdoch – 5 file(s) modified
Second attempt at parser memory revision.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/include/Parse.h
~ /trunk/src/main/gram.c
~ /trunk/src/main/gram.y
~ /trunk/src/main/main.c

Rev 63007 – Back out r63005 and r63006

murdoch — Fri, 21 Jun 2013 20:18:33 +0000

murdoch – 5 file(s) modified
Back out r63005 and r63006

~ /trunk/doc/NEWS.Rd
~ /trunk/src/include/Parse.h
~ /trunk/src/main/gram.c
~ /trunk/src/main/gram.y
~ /trunk/src/main/main.c

Rev 63005 – Revise parser to maintain its buffers between calls, so it ...

murdoch — Fri, 21 Jun 2013 18:23:18 +0000

murdoch – 5 file(s) modified
Revise parser to maintain its buffers between calls, so it should do fewer allocations.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/include/Parse.h
~ /trunk/src/main/gram.c
~ /trunk/src/main/gram.y
~ /trunk/src/main/main.c

Rev 63004 – switch(, ..) now warns

maechler — Fri, 21 Jun 2013 09:53:40 +0000

maechler – 3 file(s) modified
switch(<factor>, ..) now warns

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/base/man/switch.Rd
~ /trunk/src/main/builtin.c