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% -*- coding: utf-8 -*-\newcommand{\Rlogo}{\if{html}{\figure{../../html/Rlogo.svg}{options: class="toplogo" alt="[R logo]"}}\if{latex}{\figure{Rlogo.pdf}{options: width=0.5in}}}\name{NEWS}\title{R News}\encoding{UTF-8}\section{\Rlogo CHANGES IN R 4.1.2}{\subsection{C-LEVEL FACILITIES}{\itemize{\item The workaround in headers \file{R.h} and \file{Rmath.h}(\code{using namespace std;}) for the Oracle Developer Studiocompiler is no longer needed now C++11 is required so has beenremoved. A couple more usages of \code{log()} (which should havebeen \code{std::log()}) with an \code{int} argument are reported onSolaris.\item The undocumented limit of 4095 bytes on messages from theS-compatibility macros \code{PROBLEM} and \code{MESSAGE} is nowdocumented and longer messages will be silently truncated ratherthan potentially causing segfaults.\item If the \code{R_NO_SEGV_HANDLER} environment variable isnon-empty, the signal handler for SEGV/ILL/BUS signals (whichoffers recovery user interface) is not set. This allows morereliable debugging of crashes that involve the console.}}\subsection{DEPRECATED AND DEFUNCT}{\itemize{\item The legacy S-compatibility macros \code{PROBLEM},\code{MESSAGE}, \code{ERROR}, \code{WARN}, \code{WARNING},\code{RECOVER}, \dots{} are deprecated and will be hidden in \R4.2.0. \R{}'s native interface of \code{Rf_error} and\code{Rf_warning} has long been preferred.}}\subsection{BUG FIXES}{\itemize{\item \code{.mapply(F, dots, .)} no longer segfaults when\code{dots} is not a \code{list} and uses \code{match.fun(F)} asalways documented; reported by Andrew Simmons in \PR{18164}.\item \code{hist(<Date>, ...)} and \code{hist(<POSIXt>, ...)}no longer pass arguments for \code{rect()} (such as \code{col} and\code{density}) to \code{axis()}. (Thanks to Sebastian Meyer's\PR{18171}.)\item \verb{\Sexpr{ch}} now preserves \code{Encoding(ch)}. (Thanks toreport and patch by Jeroen Ooms in \PR{18152}.)\item Setting the RNG to \code{"Marsaglia-Multicarry"} e.g., by\code{RNGkind()}, now warns in more places, thanks toAndré Gillibert's report and patch in \PR{18168}.\item \code{gray(numeric(), alpha=1/2)} no longer segfaults, fixing\PR{18183}, reported by Till Krenz.\item Fixed \code{dnbinom(x, size=<very_small>, .., log=TRUE)}regression, reported by Martin Morgan.\item \code{as.Date.POSIXlt(x)} now keeps \code{names(x)}, thanks toDavis Vaughan's report and patch in \PR{18188}.\item \code{model.response()} now strips an \code{"AsIs"} class typically,thanks to Duncan Murdoch's report and other discussants in \PR{18190}.\item \code{try()} is considerably faster in case of an error andlong call, as e.g., from some \code{do.call()}. Thanks toAlexander Kaever's suggestion posted to R-devel.\item \code{qqline(y = <object>)} such as \code{y=I(.)}, now works,see also \PR{18190}.\item Non-integer \code{mgp} \code{par()} settings are now handledcorrectly in \code{axis()} and \code{mtext()}, thanks to MikaelJagan and Duncan Murdoch's report and suggestion in \PR{18194}.\item \code{formatC(x)} returns length zero \code{character()} now,rather than \code{""} when \code{x} is of length zero, as documented,thanks to Davis Vaughan's post to R-devel.\item \code{removeSource(fn)} now retains (other) \code{attributes(fn)}.}}}\section{\Rlogo CHANGES IN R 4.1.1}{\subsection{NEW FEATURES}{\itemize{\item \code{require(\var{pkg}, quietly = TRUE)} is quieter and inparticular does not warn if the package is not found.}}\subsection{DEPRECATED AND DEFUNCT}{\itemize{\item Use of \samp{ftp://} URIs should be regarded asdeprecated, with on-going support confined to \code{method ="libcurl"} and not routinely tested. (Nowadays no major browsersupports them.)\item The non-default \code{method = "internal"} is deprecated for\samp{http://} and \samp{ftp://} URIs for both\code{download.file} and \code{url}.\item On Windows, \code{method = "wininet"} is deprecated for\samp{http://}, \samp{https://} and \samp{ftp://} URIs for both\code{download.file} and \code{url}. (A warning is only given for\samp{ftp://}.)For \samp{ftp://} URIs the default method is now \code{"libcurl"}if available (which it is on \acronym{CRAN} builds).\code{method = "wininet"} remains the default for \samp{http://}and \samp{https://} URIs but if \code{libcurl} is available, using\code{method = "libcurl"} is preferred.}}\subsection{INSTALLATION}{\itemize{\item \command{make check} now works also without a LaTeXinstallation. (Thanks to Sebastian Meyer's \PR{18103}.)}}\subsection{BUG FIXES}{\itemize{\item \command{make check-devel} works again in an \R buildconfigured with \option{--without-recommended-packages}.\item \code{qnbinom(p, size, mu)} for large \code{size/mu} is correctnow in a range of cases (\PR{18095}); similarly for the \code{(size,prob)} parametrization of the negative binomial. Also \code{qpois()}and \code{qbinom()} are better and or faster for extreme cases. Theunderlying C code has been modularized and is common to all four casesof discrete distributions.\item \code{gap.axis} is now part of the \code{axis()} arguments whichare passed from \code{bxp()}, and hence \code{boxplot()}. (Thanks toMartin Smith's report and suggestions in \PR{18109}.)\item \code{.First} and \code{.Last} can again be set from the siteprofile.\item \code{seq.int(from, to, *)} and \code{seq.default(..)} now workbetter in large range cases where \code{from-to} is infinite wherethe two boundaries are finite.\item \code{all.equal(x,y)} now returns \code{TRUE} correctly alsowhen several entries of \code{abs(x)} and \code{abs(y)} are close to\code{.Machine$double.xmax}, the largest finite \code{numeric}.\item \code{model.frame()} now clears the object bit when removing the\code{class} attribute of a value via \code{na.action} (\PR{18100}).\item \code{charClass()} now works with multi-characterstrings on Windows (\PR{18104}, fixed by Bill Dunlap).\item \code{encodeString()} on Solaris now works again in Latin-1encoding on characters represented differently in UTF-8. Support forsurrogate pairs on Solaris has been improved.\item \code{file.show()} on Windows now works with non-ASCII pathnames representable in the current native encoding (\PR{18132}).\item Embedded \R on Windows can now find \R home directory via theregistry even when installed only for the current user (\PR{18135}).\item \code{pretty(x)} with finite \code{x} now returns finite valuesalso in the case where the extreme \code{x} values are close in sizeto the maximal representable number \code{.Machine$double.xmax}.Also, it's been tweaked for very small ranges and when a boundary isclose (or equal) to zero; e.g., \code{pretty(c(0,1e-317))} no longerhas negative numbers, currently still warning about a very smallrange, and \code{pretty(2^-(1024 - 2^-1/(c(24,10))))} is more accurate.\item The error message for not finding vignette files when weavinghas correct file sizes now. (Thanks to Sebastian Meyer's \PR{18154}.)\item \code{dnbinom(20, <large>, 1)} now correctly gives 0, andsimilar cases are more accurate with underflow precaution.(Reported by Francisco Vera Alcivar in \PR{18072}.)}}}\section{\Rlogo CHANGES IN R 4.1.0}{\subsection{FUTURE DIRECTIONS}{\itemize{\item It is planned that the 4.1.x series will be the last tosupport 32-bit Windows, with production of binary packages forthat series continuing until early 2023.}}\subsection{SIGNIFICANT USER-VISIBLE CHANGES}{\itemize{\item Data set \code{esoph} in package \pkg{datasets} now providesthe correct numbers of controls; previously it had the numbers ofcases added to these. (Reported by Alexander Fowler in \PR{17964}.)}}\subsection{NEW FEATURES}{\itemize{\item \samp{www.omegahat.net} is no longer one of the repositoriesknown by default to \code{setRepositories()}. (Nowadays it onlyprovides source packages and is often unavailable.)%% it had one Windows binary package for 4.0, none for 3.6.\item Function \code{package_dependencies()} (in package\pkg{tools}) can now use different dependency types for direct andrecursive dependencies.\item The checking of the size of tarball in\command{R CMD check --as-cran <pkg>} may be tweaked via the newenvironment variable\env{_R_CHECK_CRAN_INCOMING_TARBALL_THRESHOLD_}, as suggested in\PR{17777} by Jan Gorecki.\item Using \code{c()} to combine a factor with other factors nowgives a factor, an ordered factor when combining ordered factorswith identical levels.\item \code{apply()} gains a \code{simplify} argument to allowdisabling of simplification of results.\item The \code{format()} method for class \code{"ftable"} gets anew option \code{justify}. (Suggested by Thomas Soeiro.)\item New \code{...names()} utility. (Proposed by Neal Fultz in\PR{17705}.)\item \code{type.convert()} now warns when its \code{as.is} argumentis not specified, as the help file always said it \emph{should}. Inthat case, the default is changed to \code{TRUE} in line with itschange in \code{read.table()} (related to \code{stringsAsFactors}) in\R 4.0.0.\item When printing list arrays, classed objects are now shown\emph{via} their \code{format()} value if this is a short enoughcharacter string, or by giving the first elements of their classvector and their length.\item \code{capabilities()} gets new entry \code{"Rprof"} which is\code{TRUE} when \R has been configured with the equivalent of\command{--enable-R-profiling} (as it is by default). (Related toMichael Orlitzky's report \PR{17836}.)\item \code{str(xS4)} now also shows extraneous attributes of anS4 object \code{xS4}.\item Rudimentary support for vi-style tags in \code{rtags()} and\code{R CMD rtags} has been added. (Based on a patch from NealFultz in \PR{17214}.)\item \code{checkRdContents()} is now exported from \pkg{tools}; itand also \code{checkDocFiles()} have a new option \code{chkInternal}allowing to check Rd files marked with keyword \code{"internal"} aswell. The latter can be activated for \command{R CMD check} viaenvironment variable \env{_R_CHECK_RD_INTERNAL_TOO_}.\item New functions \code{numToBits()} and \code{numToInts()}extend the \code{raw} conversion utilities to (double precision)\code{numeric}.\item Functions \code{URLencode()} and \code{URLdecode()} inpackage \pkg{utils} now work on vectors of URIs.(Based on patch from Bob Rudis submitted with \PR{17873}.)\item \code{path.expand()} can expand \samp{~user} on mostUnix-alikes even when \code{readline} is not in use. It triesharder to expand \samp{~}, for example should environment variable\env{HOME} be unset.\item For HTML help (both dynamic and static), Rd file links tohelp pages in external packages are now treated as references totopics rather than file names, and fall back to a file link onlyif the topic is not found in the target package. The earlier rulewhich prioritized file names over topics can be restored bysetting the environment variable \env{_R_HELP_LINKS_TO_TOPICS_} toa false value.\item \code{c()} now removes \code{NULL} arguments beforedispatching to methods, thus simplifying the implementation of\code{c()} methods, \emph{but} for back compatibility keeps\code{NULL} when it is the first argument. (From a report andpatch proposal by Lionel Henry in \PR{17900}.)\item \code{Vectorize()}'s result function's environment no longerkeeps unneeded objects.\item Function \code{...elt()} now propagates visibilityconsistently with \code{..n}. (Thanks to Lionel Henry's\PR{17905}.)\item \code{capture.output()} no longer uses non-standardevaluation to evaluate its arguments. This makes evaluation offunctions like \code{parent.frame()} more consistent. (Thanks toLionel Henry's \PR{17907}.)\item \code{packBits(bits, type="double")} now works as inverse of\code{numToBits()}. (Thanks to Bill Dunlap's proposal in\PR{17914}.)\item \code{curlGetHeaders()} has two new arguments,\code{timeout} to specify the timeout for that call (overriding\code{getOption("timeout")}) and \code{TLS} to specify the minimumTLS protocol version to be used for \code{https://} URIs(\emph{inter alia} providing a means to check for sites usingdeprecated TLS versions 1.0 and 1.1).\item For \code{nls()}, an optional constant \code{scaleOffset}may be added to the denominator of the relative offset convergencetest for cases where the fit of a model is expected to be exact,thanks to a proposal by John Nash. \code{nls(*, trace=TRUE)} nowalso shows the convergence criterion.\item Numeric differentiation \emph{via} \code{numericDeriv()}gets new optional arguments \code{eps} and \code{central}, thelatter for taking central divided differences. The latter can beactivated for \code{nls()} via \code{nls.control(nDcentral =TRUE)}.\item \code{nls()} now passes the \code{trace} and \code{control}arguments to \code{getInitial()}, notably for all self-starting models,so these can also be fit in zero-noise situations via a\code{scaleOffset}. For this reason, the \code{initial} function of a\code{selfStart} model must now have \code{...} in its argument list.\item \code{bquote(splice = TRUE)} can now splice expressionvectors with attributes: this makes it possible to splice theresult of \code{parse(keep.source = TRUE)}. (Report and patchprovided by Lionel Henry in \PR{17869}.)\item \code{textConnection()} gets an optional \code{name} argument.\item \code{get()}, \code{exists()}, and \code{get0()} now signalan error if the first argument has length greater than 1.Previously additional elements were silently ignored. (Suggestedby Antoine Fabri on R-devel.)\item \R{} now provides a shorthand notation for creating functions,e.g. \code{\(x) x + 1} is parsed as \code{function(x) x + 1}.\item \R{} now provides a simple native forward pipe syntax\code{|>}. The simple form of the forward pipe inserts theleft-hand side as the first argument in the right-hand side call.The pipe implementation as a syntax transformation was motivatedby suggestions from Jim Hester and Lionel Henry.\item \code{all.equal(f, g)} for \code{function}s now by default alsocompares their \code{environment(.)}s, notably via new\code{all.equal} method for class \code{function}. Comparison of\code{nls()} fits, e.g., may now need \code{all.equal(m1, m2,check.environment = FALSE)}.\item \code{.libPaths()} gets a new option \code{include.site},allowing to \emph{not} include the site library. (Thanks to DarioStrbenac's suggestion and Gabe Becker's \PR{18016}.)\item Lithuanian translations are now available. (Thanks toRimantas Žakauskas.)\item \code{names()} now works for \code{DOTSXP} objects. On theother hand, in \file{R-lang}, the R language manual, we now warnagainst relying on the structure or even existence of suchdot-dot-dot objects.\item \code{all.equal()} no longer gives an error on \code{DOTSXP}objects.%% The Homebrew arm64 libs have cairo but not cairo-xlib\item \code{capabilities("cairo")} now applies only to thefile-based devices as it is now possible (if very unusual) tobuild \R with Cairo support for those but not for \code{X11()}.\item There is optional support for tracing the progress of\code{loadNamespace()} --- see its help.\item (Not Windows.)\code{l10n_info()} reports an additional element, the name of theencoding as reported by the OS (which may differ from theencoding part (if any) of the result from\code{Sys.getlocale("LC_CTYPE")}.\item New function \code{gregexec()} which generalizes \code{regexec()}to find \emph{all} disjoint matches and all substringscorresponding to parenthesized subexpressions of the given regularexpression. (Contributed by Brodie Gaslam.)\item New function \code{charClass()} in package \pkg{utils} toquery the wide-character classification functions in use (such as\code{iswprint}).\item The names of \code{quantile()}'s result no longer depend on theglobal \code{getOption("digits")}, but \code{quantile()} gets a newoptional argument \code{digits = 7} instead.\item \code{grep()}, \code{sub()}, \code{regexp} and variants workconsiderably faster for long factors with few levels. (Thanks toMichael Chirico's \PR{18063}.)\item Provide grouping of \code{x11()} graphics windows withina window manager such as \code{Gnome} or \code{Unity}; thanks to apatch by Ivan Krylov posted to R-devel.\item The \code{split()} method for class \code{data.frame} nowallows the \code{f} argument to be specified as a formula.\item \code{sprintf} now warns on arguments unused by the formatstring.\item New palettes \code{"Rocket"} and \code{"Mako"} for\code{hcl.colors()} (approximating palettes of the same namefrom the \pkg{viridisLite} package).Contributed by Achim Zeileis.\item The base environment and its namespace are now locked (soone can no longer add bindings to these or remove from these).\item \command{Rterm} handling of multi-byte characters has beenimproved, allowing use of such characters when supported by thecurrent locale.\item \command{Rterm} now accepts \code{ALT+ +xxxxxxxx} sequences toenter Unicode characters as hex digits.\item Environment variable \env{LC_ALL} on Windows now takesprecedence over \env{LC_CTYPE} and variables for other supportedcategories, matching the POSIX behaviour.\item \code{duplicated()} and \code{anyDuplicated()} are nowoptimized for integer and real vectors that are known to be sortedvia the ALTREP framework. Contributed by Gabriel Becker via \PR{17993}.}}\subsection{GRAPHICS}{\itemize{\item The graphics engine version, \code{R_GE_version}, has beenbumped to \code{14} and so packages that provide graphics devicesshould be reinstalled.\item Graphics devices should now specify \code{deviceVersion} toindicate what version of the graphics engine they support.\item Graphics devices can now specify \code{deviceClip}. If\code{TRUE}, the graphics engine will never perform any clippingof output itself.The clipping that the graphics engine does perform (for both\code{canClip = TRUE} and \code{canClip = FALSE}) has beenimproved to avoid producing unnecessary artifacts in clippedoutput.\item The \pkg{grid} package now allows \code{gpar(fill)} to bea \code{linearGradient()}, a \code{radialGradient()}, or a\code{pattern()}. The \code{viewport(clip)} can now also bea grob, which defines a clipping path, and there is a new\code{viewport(mask)} that can also be a grob, which definesa mask.These new features are only supported so far on the Cairo-basedgraphics devices and on the \code{pdf()} device.\item (Not Windows.)A warning is given when a Cairo-based type is specified for a\code{png()}, \code{jpeg()}, \code{tiff()} or \code{bmp()}device but Cairo is unsupported (so \code{type = "Xlib"}is tried instead).\item \code{grSoftVersion()} now reports the versions of FreeTypeand FontConfig if they are used directly (not \emph{via} Pango),as is most commonly done on macOS.}}\subsection{C-LEVEL FACILITIES}{\itemize{\item The \emph{standalone} \file{libRmath} math library and \R's CAPI now provide \code{log1pexp()} again as documented, and gain\code{log1mexp()}.}}\subsection{INSTALLATION on a UNIX-ALIKE}{\itemize{\item \command{configure} checks for a program \command{pkgconf}if program \command{pkg-config} is not found. These are now onlylooked for on the path (like almost all other programs) so if neededspecify a full path to the command in \code{PKG_CONFIG}, for examplein file \file{config.site}.\item C99 function \code{iswblank} is required -- it was last seenmissing ca 2003 so the workaround has been removed.\item There are new \command{configure} options\option{--with-internal-iswxxxxx},\option{--with-internal-towlower} and\option{--with-internal-wcwidth} which allows the system functionsfor wide-character classification, case-switching and width(\code{wcwidth} and \code{wcswidth}) to be replaced by internalones. The first has long been used on macOS, AIX (and Windows)but this enables it to be unselected there and selected for otherplatforms (it is the new default on Solaris). The second is newin this version of \R and is selected by default on macOS andSolaris. The third has long been the default and remains so as itcontains customizations for East Asian languages.System versions of these functions are often minimally implemented(sometimes only for ASCII characters) and may not cover the fullrange of Unicode points: for example Solaris (and Windows) onlycover the Basic Multilingual Plane.\item Cairo installations without X11 are more likely to bedetected by \command{configure}, when the file-based Cairographics devices will be available but not \code{X11(type ="cairo")}.\item There is a new \command{configure} option\option{--with-static-cairo} which is the default on macOS. Thisshould be used when only static cairo (and where relevant, Pango)libraries are available.\item Cairo-based graphics devices on platforms without Pango butwith FreeType/FontConfig will make use of the latter for font selection.}}\subsection{LINK-TIME OPTIMIZATION on a UNIX-ALIKE}{\itemize{\item Configuring with flag \option{--enable-lto=R} now also usesLTO when installing the recommended packages.\item \command{R CMD INSTALL} and \command{R CMD SHLIB} have a newflag \option{--use-LTO} to use LTO when compiling code, for usewith \R configured with \option{--enable-lto=R}. For \Rconfigured with \option{--enable-lto}, they have the new flag\option{--no-use-LTO}.Packages can opt in or out of LTO compilation \emph{via} a\samp{UseLTO} field in the \file{DESCRIPTION} file. (As usual thiscan be overridden by the command-line flags.)}}\subsection{BUILDING R on Windows}{\itemize{\item for GCC \eqn{\ge}{>=} 8, \code{FC_LEN_T} is defined in\file{config.h} and hence character lengths are passed from C toFortran in \emph{inter alia} BLAS and LAPACK calls.\item There is a new text file\file{src/gnuwin32/README.compilation}, which outlines how C/Fortrancode compilation is organized and documents new features:\itemize{\item \R can be built with Link-Time Optimization with asuitable compiler -- doing so with GCC 9.2 showed severalinconsistencies which have been corrected.\item There is support for cross-compiling the C and Fortrancode in \R and standard packages on suitable (Linux) platforms.This is mainly intended to allow developers to test laterversions of compilers -- for example using GCC 9.2 or 10.x hasdetected issues that GCC 8.3 in Rtools40 does not.\item There is experimental support for cross-building \Rpackages with C, C++ and/or Fortran code.}\item The R installer can now be optionally built to support a singlearchitecture (only 64-bit or only 32-bit).}}\subsection{PACKAGE INSTALLATION}{\itemize{\item The default C++ standard has been changed to C++14 whereavailable (which it is on all currently checked platforms): if not(as before) C++11 is used if available otherwise C++ is notsupported.Packages which specify C++11 will still be installed using C++11.C++14 compilers may give deprecation warnings, most often for\code{std::random_shuffle} (deprecated in C++14 and removed inC++17). Either specify C++11 (see \sQuote{Writing R Extensions})or modernize the code and if needed specify C++14. The latter hasbeen supported since \R 3.4.0 so the package's \file{DESCRIPTION}would need to include something like\preformatted{Depends: R (>= 3.4)}}}\subsection{PACKAGE INSTALLATION on Windows}{\itemize{\item \command{R CMD INSTALL} and \command{R CMD SHLIB} make useof their flag \option{--use-LTO} when the \samp{LTO_OPT} makemacro is set in file \file{etc/$\{R_ARCH\}/Makeconf} or in apersonal/site \file{Makevars} file. (For details see\sQuote{Writing R Extensions} §4.5.)This provides a valuable check on code consistency. It does workwith GCC 8.3 as in Rtools40, but that does not detect everythingthe \acronym{CRAN} checks with current GCC do.}}\subsection{PACKAGE INSTALLATION on macOS}{\itemize{\item The default personal library directory on builds with\option{--enable-aqua} (including \acronym{CRAN} builds) nowdiffers by CPU type, one of\preformatted{~/Library/R/x86_64/x.y/library~/Library/R/arm64/x.y/library}This uses the CPU type \R (and hence the packages) were built for,so when a \samp{x86_64} build of R is run under Rosetta emulation onan \samp{arm64} Mac, the first is used.}}\subsection{UTILITIES}{\itemize{\item \command{R CMD check} can now scan package functions forbogus \code{return} statements, which were possibly intended as\code{return()} calls (wish of \PR{17180}, patch by SebastianMeyer). This check can be activated via the new environmentvariable \env{_R_CHECK_BOGUS_RETURN_}, true for \code{--as-cran}.\item \command{R CMD build} omits tarballs and binaries ofprevious builds from the top-level package directory.(\PR{17828}, patch by Sebastian Meyer.)\item \command{R CMD check} now runs sanity checks on the use of\samp{LazyData}, for example that a \file{data} directory ispresent and that \samp{LazyDataCompression} is not specifiedwithout \samp{LazyData} and has a documented value. For packageswith large LazyData databases without specifying\samp{LazyDataCompression}, there is a reference to the code givenin \sQuote{Writing R Extensions} §1.1.6 to test the choice ofcompression (as in all the \acronym{CRAN} packages tested anon-default method was preferred).\item \command{R CMD build} removes \samp{LazyData} and\samp{LazyDataCompression} fields from the \file{DESCRIPTION} fileof packages without a \file{data} directory.}}\subsection{ENCODING-RELATED CHANGES}{\itemize{\item The parser now treats \samp{\\Unnnnnnnn} escapes larger thanthe upper limit for Unicode points (\samp{\\U10FFFF}) as an erroras they cannot be represented by valid UTF-8.Where such escapes are used for outputting non-printable(including unassigned) characters, 6 hex digits are used (ratherthan 8 with leading zeros). For clarity, braces are used, forexample \samp{\\U\{0effff\}}.\item The parser now looks for non-ASCII spaces on Solaris (aspreviously on most other OSes).\item There are warnings (including from the parser) on the use ofunpaired surrogate Unicode points such as \samp{\\uD834}. (Thesecannot be converted to valid UTF-8.)\item Functions \code{nchar()}, \code{tolower()}, \code{toupper()}and \code{chartr()} and those using regular expressions have moresupport for inputs with a marked Latin-1 encoding.\item The character-classification functions used (by default) toreplace the system \code{iswxxxxx} functions on Windows, macOS andAIX have been updated to Unicode 13.0.0.The character-width tables have been updated to include newassignments in Unicode 13.0.0. This included treating all controlcharacters as having zero width.\item The code for evaluating default (extended) regularexpressions now uses the same character-classification functionsas the rest of \R (previously they differed on Windows, macOS andAIX).\item There is a build-time option to replace the system'swide-character \code{wctrans} C function by tables shipped with\R: use \command{configure} option\option{--with-internal-towlower} or (on Windows)\samp{-DUSE_RI18N_CASE} in \samp{CFLAGS} when building \R. Thismay be needed to allow \code{tolower()} and \code{toupper()} towork with Unicode characters beyond the Basic Multilingual Planewhere not supported by system functions (e.g. on Solaris where itis the new default).\item R is more careful when truncating UTF-8 and other multi-bytestrings that are too long to be printed, passed to the system orlibraries or placed into an internal buffer. Truncation will nolonger produce incomplete multibyte characters.}}\subsection{DEPRECATED AND DEFUNCT}{\itemize{\item Function \code{plclust()} from the package \pkg{stats} and\code{package.dependencies()}, \code{pkgDepends()},\code{getDepList()}, \code{installFoundDepends()}, and\code{vignetteDepends()} from package \pkg{tools} are defunct.\item Defunct functions \code{checkNEWS()} and \code{readNEWS()} frompackage \pkg{tools} and \code{CRAN.packages()} from \pkg{utils} havebeen removed.\item \command{R CMD config CXXCPP} is defunct (it was deprecatedin \R{} 3.6.2).\item \code{parallel::detectCores()} drops support for Irix(retired in 2013).\item The \code{LINPACK} argument to \code{chol.default()},\code{chol2inv()}, \code{solve.default()} and \code{svd()} hasbeen defunct since \R 3.1.0. It was silently ignored up to \R4.0.3 but now gives an error.\item Subsetting/indexing, such as \code{ddd[*]} or \code{ddd$x}on a \code{DOTSXP} (dot-dot-dot) object \code{ddd} has beendisabled; it worked by accident only and was undocumented.}}\subsection{BUG FIXES}{\itemize{\item Many more C-level allocations (mainly by \code{malloc} and\code{strdup}) are checked for success with suitable alternativeactions.\item Bug fix for \code{replayPlot()}; this was turning offgraphics engine display list recording if a recorded plot wasreplayed in the same session. The impact of the bug becamevisible if resize the device after replay OR if attempted another\code{savePlot()} after replay (empty display list means emptyscreen on resize or empty saved plot).\item \command{R CMD check} etc now warn when a package exportsnon-existing S4 classes or methods, also in case of no\dQuote{methods} presence. (Reported by Alex Bertram;reproducible example and patch by Sebastian Meyer in \PR{16662}.)\item \code{boxplot()} now also accepts \code{call}s for labels suchas \code{ylab}, the same as \code{plot()}. (Reported by Marius Hofert.)\item The help page for \code{xtabs()} now correctly states that\code{addNA} is setting \code{na.action = na.pass} among others.(Reported as \PR{17770} by Thomas Soeiro.)\item The \command{R CMD check <pkg>} gives a longer and morecomprehensible message when \file{DESCRIPTION} misses dependencies,e.g., in \code{Imports:}. (Thanks to the contributors of \PR{17179}.)\item \code{update.default()} now calls the generic \code{update()}on the formula to work correctly for models with extended formulas.(As reported and suggested by Neal Fultz in \PR{17865}.)\item The horizontal position of leaves in a dendrogram is nowcorrect also with \code{center = FALSE}. (\PR{14938}, patch fromSebastian Meyer.)\item \code{all.equal.POSIXt()} no longer warns about andsubsequently ignores inconsistent \code{"tzone"} attributes, butdescribes the difference in its return value (\PR{17277}).This check can be disabled \emph{via} the new argument\code{check.tzone = FALSE} as suggested by Sebastian Meyer.\item \code{as.POSIXct()} now populates the \code{"tzone"}attribute from its \code{tz} argument when \code{x} is a logicalvector consisting entirely of \code{NA} values.\item \code{x[[2^31]] <- v} now works. (Thanks to the report andpatch by Suharto Anggono in \PR{17330}.)\item In log-scale graphics, \code{axis()} ticks and label positionsare now computed more carefully and symmetrically in their range,typically providing \emph{more} ticks, fulfilling wishesin \PR{17936}. The change really corresponds to an improved\code{axisTicks()} (package \pkg{grDevices}), potentially influencing\pkg{grid} and \pkg{lattice}, for example.\item \code{qnorm(<very large negative>, log.p=TRUE)} is now correctto at least five digits where it was catastrophically wrong,previously.\item \code{sum(df)} and similar \code{"Summary"}- and\code{"Math"}-group member functions now work for data frames\code{df} with \code{\link{logical}} columns, notably also of zerorows. (Reported to R-devel by Martin \dQuote{b706}.)\item \code{unsplit()} had trouble with tibbles due to unsound use of\code{rep(NA, len)}-indexing, which should use \code{NA_integer_}(Reported to R-devel by Mario Annau.)\item \code{pnorm(x, log.p = TRUE)} underflows to \code{-Inf} slightlylater.\item \code{show(<hidden S4 generic>)} prints better and withoutquotes for non-hidden S4 generics.\item \code{read.table()} and relatives treated an "NA" column name asmissing when \code{check.names = FALSE} \PR{18007}.\item Parsing strings containing UTF-16 surrogate pairs such as\code{"\uD834\uDD1E"} works better on some (uncommon) platforms.\code{sprintf("\%X", utf8ToInt("\uD834\uDD1E"))} should now give\code{"1D11E"} on all platforms.%% failed on Solaris\item \code{identical(x,y)} is no longer true for differing\code{DOTSXP} objects, fixing \PR{18032}.\item \code{str()} now works correctly for \code{DOTSXP} and relatedexotics, even when these are doomed.Additionally, it no longer fails for \code{list}s with a \code{class} and\dQuote{irregular} method definitions such that e.g. \code{lapply(*)} willnecessarily fail, as currently for different \CRANpkg{igraph} objects.\item Message translation domains, e.g., for errors and warnings, arenow correctly determined also when e.g., a \pkg{base} function iscalled from \dQuote{top-level} function (i.e., defined in \code{globalenv()}),thanks to a patch from Joris Goosen fixing \PR{17998}.\item Too long lines in environment files (e.g., \file{Renviron}) nolonger crash \R. This limit has been increased to 100,000 bytes.(\PR{18001}.)\item There is a further workaround for FreeType givingincorrect italic font faces with cairo-based graphics devices onmacOS.\item \code{add_datalist(*, force = TRUE)} (from package\pkg{tools}) now actually updates an existing \file{data/datalist}file for new content. (Thanks to a report and patch by SebastianMeyer in \PR{18048}.)\item \code{cut.Date()} and \code{cut.POSIXt()} could produce anempty last interval for \code{breaks = "months"} or \code{breaks ="years"}. (Reported as \PR{18053} by Christopher Carbone.)\item Detection of the encoding of \sQuote{regular} macOS localessuch as \samp{en_US} (which is UTF-8) had been broken by a macOSchange: fortunately these are now rarely used with\samp{en_US.UTF-8} being preferred.\item \code{sub()} and \code{gsub(pattern, repl, x, *)} now keepattributes of \code{x} such as \code{names()} also when\code{pattern} is \code{NA} (\PR{18079}).\item Time differences (\code{"difftime"} objects) get a replacementand a \code{rep()} method to keep \code{"units"} consistent.(Thanks to a report and patch by Nicolas Bennett in \PR{18066}.)\item The \verb{\RdOpts} macro, setting defaults for \verb{\Sexpr}options in an Rd file, had been ineffective since \R 2.12.0: itnow works again.(Thanks to a report and patch by Sebastian Meyer in \PR{18073}.)\item \code{mclapply} and \code{pvec} no longer accidentally terminateparallel processes started before by \code{mcparallel} or relatedcalls in package \pkg{parallel} (\PR{18078}).\item \code{grep} and other functions for evaluating (extended)regular expressions handle in Unicode also strings not explicitlyflagged UTF-8, but flagged native when running in UTF-8 locale.\item Fixed a crash in \code{fifo} implementation on Windows(\PR{18031}).\item Binary mode in \code{fifo} on Windows is now properly detectedfrom argument \code{open} (\PR{15600}, \PR{18031}).}}}\section{\Rlogo CHANGES IN R 4.0.5}{\subsection{BUG FIXES}{\itemize{\item The change to the internal table in \R 4.0.4 for\code{iswprint} has been reverted: it contained some errors inprintability of \sQuote{East Asian} characters.\item For packages using \samp{LazyData}, \command{R CMD build}ignored the \option{--resave-data} option and the\samp{BuildResaveData} field of the \file{DESCRIPTION} file (in \Rversions 4.0.0 to 4.0.4).}}}\section{\Rlogo CHANGES IN R 4.0.4}{\subsection{NEW FEATURES}{\itemize{\item File \file{share/texmf/tex/latex/jss.cls} has been updatedto work with LaTeX versions since Oct 2020.\item Unicode character width tables (as used by\code{nchar(, type = "w")}) have been updated to Unicode 12.1by Brodie Gaslam (\PR{17781}), including many emoji.\item The internal table for \code{iswprint} (used on Windows,macOS and AIX) has been updated to include many recent Unicodecharacters.}}\subsection{INSTALLATION on a UNIX-ALIKE}{\itemize{\item If an external BLAS is specified by \option{--with-blas=foo}or \emph{via} environment variable \env{BLAS_LIBS} is not found,this is now a configuration error. The previous behaviour was notclear from the documentation: it was to continue the search as if\option{--with-blas=yes} was specified.}}\subsection{BUG FIXES}{\itemize{\item \code{all.equal(x,y)} now \dQuote{sees} the two different\code{NA}s in factors, thanks to Bill Dunlap and others in\PR{17897}.\item \code{(~ NULL)[1]} and similar formula subsetting now works,thanks to a report and patch by Henrik Bengtsson in \PR{17935}.Additionally, subsetting leaving an empty formula now works too,thanks to suggestions by Suharto Anggono.\item \code{.traceback(n)} keeps source references again, as before\R 4.0.0, fixing a regression; introduced by the \PR{17580}, reportedincluding two patch proposals by Brodie Gaslam.\item \code{unlist(plst, recursive=FALSE)} no longer drops contentfor pairlists with list components, thanks to the report and patchby Suharto Anggono in \PR{17950}.\item \code{iconvlist()} now also works on MUSL based (Linux)systems, from a report and patch suggestion by Wesley Chan in\PR{17970}.\item \code{round()} and \code{signif()} no longer tolerate wrongargument names, notably in 1-argument calls; reported by ShaneMueller on R-devel (mailing list); later reported as \PR{17976}.\item \code{.Machine} has \code{longdouble.*} elements only if\code{capabilities("long.double")} is true, as documented.(Previously they were included if the platform had \code{longdouble} identical to \code{double}, as ARM does.)\item \code{p.adjust(numeric(), n=0)} now works, fixing \PR{18002}.\item \code{identical(x,y)} no longer prints "Unknown Type .." for\code{typeof(x) == "..."} objects.\item Fix (auto-)\code{print()}ing of named complex vectors, see\PR{17868} and \PR{18019}.\item \code{all.equal(<language>, <...>)} now works, fixing \PR{18029}.\item \code{as.data.frame.list(L, row.names=NULL)} now behaves in linewith \code{data.frame()}, disregarding names of components of\code{L}, fixing \PR{18034}, reported by Kevin Tappe.\item \code{checkRdaFiles(ff)$version} is now correct also when\code{ff} contains files of different versions, thanks to a reportand patch from Sebastian Meyer in \PR{18041}.\item macOS: Quartz device live drawing could fail (no plot is shown)if the system changes the drawing context after view update (oftenthe case since macOS Big Sur). System log may show"CGContextDelegateCreateForContext: invalid context" error.}}}\section{\Rlogo CHANGES IN R 4.0.3}{\subsection{NEW FEATURES}{\itemize{\item On platforms using \command{configure} option\option{--with-internal-tzcode}, additional values\code{"internal"} and (on macOS only) \code{"macOS"} are acceptedfor the environment variable \env{TZDIR}. (See \code{?TZDIR}.)On macOS, \code{"macOS"} is used by default if the system timezonedatabase is a newer version than that in the \R installation.\item When \code{install.packages(type = "source")} fails to finda package in a repository it mentions package versions which areexcluded by their \R version requirement and links to hints onwhy a package might not be found.\item The default value for \code{options("timeout")} can be setfrom environment variable \env{R_DEFAULT_INTERNET_TIMEOUT}, stilldefaulting to 60 (seconds) if that is not set or invalid.This may be needed when child \R processes are doing downloads,for example during the installation of source packages whichdownload jars or other forms of data.}}\subsection{LINK-TIME OPTIMIZATION on a UNIX-ALIKE}{\itemize{\item There is now support for parallelized Link-Time Optimization(LTO) with GCC and for \sQuote{thin} LTO with\command{clang} \emph{via} setting the \samp{LTO} macro.\item There is support for setting a different LTO flag for theFortran compiler, including to empty when mixing \command{clang}and \command{gfortran} (as on macOS). See file \file{config.site}.\item There is a new \samp{LTO_LD} macro to set linker options forLTO compilation, for example to select an alternative linker orto parallelize thin LTO.}}\subsection{DEPRECATED AND DEFUNCT}{\itemize{\item The \code{LINPACK} argument to \code{chol.default()},\code{chol2inv()}, \code{solve.default()} and \code{svd()} has beendefunct since \R 3.1.0. Using it now gives a warning which willbecome an error in \R 4.1.0.}}\subsection{BUG FIXES}{\itemize{\item The code mitigating stack overflow with PCRE regexps on verylong strings is enabled for PCRE2 < 10.30 also when JIT is enabled,since stack overflows have been seen in that case.%% Ubuntu 16.04LTS has PCRE2 10.21\item Fix to correctly show the group labels in \code{dotchart()}(which where lost in the \code{ylab} improvement for \R 4.0.0).\item \code{addmargins(*, ..)} now also works when \code{fn()} is alocal function, thanks to bug report and patch \PR{17124} from AlexBertram.\item \code{rank(x)} and hence \code{sort(x)} now work when \code{x}is an object (as per \code{is.object(x)}) of type \code{"raw"}\emph{and} provides a valid \code{`[`} method, e.g., for\code{gmp::as.bigz(.)} numbers.\item \code{chisq.test(*, simulate.p.value=TRUE)} and\code{r2dtable()} now work correctly for large table entries (in themillions). Reported by Sebastian Meyer and investigated by morehelpers in \PR{16184}.\item Low-level socket read/write operations have been fixed tocorrectly signal communication errors. Previously, such errors couldlead to a segfault due to invalid memory access. Reportedand debugged by Dmitriy Selivanov in \PR{17850}.\item \code{quantile(x, pr)} works more consistently for \code{pr}values slightly outside [0,1], thanks to Suharto Anggono's \PR{17891}.Further, \code{quantile(x, prN, names=FALSE)} now works even when\code{prN} contains \code{NA}s, thanks to Anggono's \PR{17892}.Ditto for ordered factors or \code{Date} objectswhen \code{type = 1} or \code{3}, thanks to \PR{17899}.\item Libcurl-based internet access, including\code{curlGetHeaders()}, was not respecting the \code{"timeout"}option. If this causes unanticipated timeouts, considerincreasing the default by setting \env{R_DEFAULT_INTERNET_TIMEOUT}.\item \code{as.Date(<char>)} now also works with an initial\code{""}, thanks to Michael Chirico's \PR{17909}.\item \code{isS3stdGeneric(f)} now detects an S3 generic also when itit is \code{trace()}d, thanks to Gabe Becker's \PR{17917}.\item \code{R_allocLD()} has been fixed to return memory aligned forlong double type \PR{16534}.\item \code{fisher.test()} no longer segfaults when called again afterits internal stack has been exceeded \PR{17904}.\item Accessing a long vector represented by a compact integersequence no longer segfaults (reported and debugged by HughParsonage).\item \code{duplicated()} now works also for strings with multipleencodings inside a single vector \PR{17809}.\item \code{phyper(11, 15, 0, 12, log.p=TRUE)} no longer gives\code{NaN}; reported as \PR{17271} by Alexey Stukalov.\item Fix incorrect calculation in \code{logLik.nls()} \PR{16100}, patchfrom Sebastian Meyer.\item A very old bug could cause a segfault in \code{model.matrix()}when terms involved logical variables. Part of \PR{17879}.\item \code{model.frame.default()} allowed \code{data = 1}, leading toinvoluntary variable capture (rest of \PR{17879}).\item \code{tar()} no longer skips non-directory files, thanks to apatch by Sebastian Meyer, fixing the remaining part of \PR{16716}.}}}\section{\Rlogo CHANGES IN R 4.0.2}{\subsection{UTILITIES}{\itemize{\item \command{R CMD check} skips vignette re-building (with awarning) if the \samp{VignetteBuilder} package(s) are not available.}}\subsection{BUG FIXES}{\itemize{\item Paths with non-ASCII characters caused problems forpackage loading on Windows \PR{17833}.\item Using \pkg{tcltk} widgets no longer crashes R onWindows.\item \code{source(*, echo=TRUE)} no longer fails in some cases withempty lines; reported by Bill Dunlap in \PR{17769}.\item \code{on.exit()} now correctly matches named arguments, thanksto \PR{17815} (including patch) by Brodie Gaslam.\item \code{regexpr(*, perl=TRUE)} no longer returns incorrectpositions into text containing characters outside of the UnicodeBasic Multilingual Plane on Windows.}}}\section{\Rlogo CHANGES IN R 4.0.1}{\subsection{NEW FEATURES}{\itemize{\item \code{paste()} and \code{paste0()} gain a new optionalargument \code{recycle0}. When set to true, zero-lengtharguments are recycled leading to \code{character(0)} after the\code{sep}-concatenation, i.e., to the empty string \code{""} if\code{collapse} is a string and to the zero-length value\code{character(0)} when \code{collapse = NULL}.A package whose code uses this should depend on \samp{R (>= 4.0.1)}.\item The \code{summary(<warnings>)} method now maps the countscorrectly to the warning messages.}}\subsection{BUG FIXES}{\itemize{\item \code{aov(frml, ...)} now also works where the \code{formula}deparses to more than 500 characters, thanks to a report and patchproposal by Jan Hauffa.\item Fix a dozen places (code, examples) as \code{Sys.setlocale()}returns the new rather than the previous setting.\item Fix for adding two complex \pkg{grid} units via \code{sum()}.Thanks to Gu Zuguang for the report and Thomas Lin Pedersen forthe patch.\item Fix \code{parallel::mclapply(..., mc.preschedule=FALSE)}to handle raw vector results correctly. \PR{17779}\item Computing the \code{base} value, i.e., 2, \dQuote{everywhere},now uses \code{FLT_RADIX}, as the original \file{machar} code loopedindefinitely on the ppc64 architecture for the \code{longdouble} case.\item In \R 4.0.0, \code{sort.list(x)} when \code{is.object(x)} wastrue, e.g., for \code{x <- I(letters)}, was accidentally using\code{method = "radix"}. Consequently, e.g., \code{merge(<data.frame>)}was much slower than previously; reported in \PR{17794}.\item \code{plot(y ~ x, ylab = quote(y[i]))} now works, as e.g., for\code{xlab}; related to \PR{10525}.\item \code{parallel::detect.cores(all.tests = TRUE)} tries amatching OS name before the other tests (which were intended onlyfor unknown OSes).\item Parse data for raw strings is now recorded correctly. Reportedby Gabor Csardi.}}}\section{\Rlogo CHANGES IN R 4.0.0}{\subsection{SIGNIFICANT USER-VISIBLE CHANGES}{\itemize{\item Packages need to be (re-)installed under this version(4.0.0) of \R.\item \code{matrix} objects now also inherit from class\code{"array"}, so e.g., \code{class(diag(1))} is \code{c("matrix","array")}. This invalidates code incorrectly assuming that\code{class(matrix_obj))} has length one.S3 methods for class \code{"array"} are now dispatched for\code{matrix} objects.\item There is a new syntax for specifying \emph{raw} characterconstants similar to the one used in C++: \code{r"(...)"} with\code{...} any character sequence not containing the sequence\samp{)"}. %}) \samp{*}: Rd-parser bug for \code{*}"This makes it easier to write strings that contain backslashes orboth single and double quotes. For more details see \code{?Quotes}.\item \R now uses a \samp{stringsAsFactors = FALSE} default, andhence by default no longer converts strings to factors in callsto \code{data.frame()} and \code{read.table()}.A large number of packages relied on the previous behaviour andso have needed/will need updating.\item The \code{plot()} S3 generic function is now in package\pkg{base} rather than package \pkg{graphics}, as it isreasonable to have methods that do not use the \pkg{graphics}package. The generic is currently re-exported from the\pkg{graphics} namespace to allow packages importing it fromthere to continue working, but this may change in future.Packages which define S4 generics for \code{plot()} should bere-installed and package code using such generics from otherpackages needs to ensure that they are imported rather than relyon their being looked for on the search path (as in a namespace,the base namespace has precedence over the search path).}}\subsection{REFERENCE COUNTING}{\itemize{\item Reference counting is now used instead of the \code{NAMED}mechanism for determining when objects can be safely mutated inbase C code. This reduces the need for copying in some cases andshould allow further optimizations in the future. It shouldhelp make the internal code easier to maintain.This change is expected to have almost no impact on packagesusing supported coding practices in their C/C++ code.}}\subsection{MIGRATION TO PCRE2}{\itemize{\item This version of \R is built against the PCRE2 library forPerl-like regular expressions, if available. (On non-Windowsplatforms PCRE1 can optionally be used if PCRE2 is not availableat build time.) The version of PCRE in use can be obtained\emph{via} \code{extSoftVersion()}: PCRE1 (formerly known as\sQuote{PCRE}) has versions <= 8, PCRE2 versions >= 10.\item Making PCRE2 available when building \R from source isstrongly recommended (preferably version 10.30 or later) as PCRE1is no longer developed: version 8.44 is\sQuote{likely to be the final release}.% https://lists.exim.org/lurker/message/20200212.174850.6edd8277.en.html\item PCRE2 reports errors for some regular expressions that wereaccepted by PCRE1. A hyphen now has to be escaped in a characterclass to be interpreted as a literal (unless first or last in theclass definition). \samp{\\R}, \samp{\\B} and \samp{\\X} are nolonger allowed in character classes (PCRE1 treated these asliterals).\item Option \code{PCRE_study} is no longer used with PCRE2, and isreported as \code{FALSE} when that is in use.}}\subsection{NEW FEATURES}{\itemize{\item \code{assertError()} and \code{assertWarning()} (in package\pkg{tools}) can now check for \emph{specific} error or warningclasses \emph{via} the new optional second argument \code{classes}(which is not back compatible with previous use of an unnamed secondargument).\item \code{DF2formula()}, the utility for the data frame method of\code{formula()}, now works without parsing and explicit evaluation,starting from Suharto Anggono's suggestion in \PR{17555}.\item \code{approxfun()} and \code{approx()} gain a new argument\code{na.rm} defaulting to true. If set to false, missing\code{y} values now propagate into the interpolated values.\item Long vectors are now supported as the \code{seq} argument ofa \code{for()} loop.\item \code{str(x)} gets a new \code{deparse.lines} option with adefault to speed it up when \code{x} is a large \code{call} object.\item The internal traceback object produced when an error issignalled (\code{.Traceback}), now contains the \code{call}srather than the \emph{\code{deparse()}d} calls, deferring thedeparsing to the user-level functions \code{.traceback()} and\code{traceback()}. This fulfils the wish of \PR{17580}, reportedincluding two patch proposals by Brodie Gaslam.\item \code{data.matrix()} now converts character columns tofactors and from this to integers.\item \code{package.skeleton()} now explicitly lists all exportsin the \file{NAMESPACE} file.\item New function \code{.S3method()} to register S3 methods in Rscripts.\item \code{file.path()} has some support for file paths not inthe session encoding, e.g.\sspace{}with UTF-8 inputs in anon-UTF-8 locale the output is marked as UTF-8.\item Most functions with file-path inputs will give an expliciterror if a file-path input in a marked encoding cannot betranslated (to the native encoding or in some cases on Windows toUTF-8), rather than translate to a different file path usingescapes. Some (such as \code{dir.exists()}, \code{file.exists()},\code{file.access()}, \code{file.info()}, \code{list.files()},\code{normalizePath()} and \code{path.expand()}) treat this likeany other non-existent file, often with a warning.\item There is a new help document accessed by\code{help("file path encoding")} detailing how file paths withmarked encodings are handled.\item New function \code{list2DF()} for creating data frames fromlists of variables.\item \code{iconv()} has a new option \code{sub = "Unicode"} totranslate UTF-8 input invalid in the \samp{to} encoding using\samp{<U+xxxx>} escapes.\item There is a new function \code{infoRDS()} providing informationabout the serialization format of a serialized object.\item S3 method lookup now by default skips the elements of thesearch path between the global and base environments.\item Added an argument \code{add_datalist(*, small.size = 0)} toallow the creation of a \file{data/datalist} file even when thetotal size of the data sets is small.\item The backquote function \code{bquote()} has a new argument\code{splice} to enable splicing a computed list of values into anexpression, like \code{,@} in LISP's backquote.\item The formula interface to \code{t.test()} and\code{wilcox.test()} has been extended to handle one-sample andpaired tests.\item The \code{palette()} function has a new default set ofcolours (which are less saturated and have better accessibilityproperties). There are also some new built-in palettes, whichare listed by the new \code{palette.pals()} function. Theseinclude the old default palette under the name \code{"R3"}. Finally,the new \code{palette.colors()} function allows a subset ofcolours to be selected from any of the built-in palettes.\item \code{n2mfrow()} gains an option \code{asp = 1} to specify theaspect ratio, fulfilling the wish and extending the proposal ofMichael Chirico in \PR{17648}.\item For \code{head(x, n)} and \code{tail()} the default andother S3 methods notably for \emph{vector} \code{n}, e.g. to get a\dQuote{corner} of a matrix, has been extended to \code{array}'sof higher dimension thanks to the patch proposal by Gabe Becker in\PR{17652}. Consequently, optional argument \code{addrownums} isdeprecated and replaced by the (more general) argument\code{keepnums}. An invalid second argument \code{n} now leadsto typically more easily readable error messages.\item New function \code{.class2()} provides the full charactervector of class names used for S3 method dispatch.\item Printing \code{methods(..)} now uses a new \code{format()} method.\item \code{sort.list(x)} now works for non-atomic objects\code{x} and \code{method = "auto"} (the default) or\code{"radix"} in cases \code{order(x)} works, typically via a\code{xtfrm()} method.\item Where they are available, \code{writeBin()} allowslong vectors.% (those of length \eqn{\ge 2^{31}}{>= 2^31}).\item New function \code{deparse1()} produces one string, wrapping\code{deparse()}, to be used typically in\code{deparse1(substitute(*))}, e.g., to fix \PR{17671}.\item \code{wilcox.test()} enhancements: In the (non-paired)two-sample case, \code{Inf} values are treated as very large forrobustness consistency. If exact computations are used, theresult now has \code{"exact"} in the \code{method} element of itsreturn value. New arguments \code{tol.root} and\code{digits.rank} where the latter may be used for stability totreat very close numbers as ties.\item \code{readBin()} and \code{writeBin()} now report an errorfor an invalid \code{endian} value. The affected code needs to befixed with care as the old undocumented behavior was to swapendian-ness in such cases.\item \code{sequence()} is now an S3 generic with an internallyimplemented default method, and gains arguments to generate morecomplex sequences. Based on code from the \pkg{S4Vectors}Bioconductor package and the advice of Hervé Pagès.\item \code{print()}'s default method and many other methods (bycalling the default eventually and passing \code{...}) now makeuse of a new optional \code{width} argument, avoiding the need forthe user to set and reset \code{options("width")}.\item \code{memDecompress()} supports the RFC 1952 format(e.g.\sspace{}in-memory copies of \command{gzip}-compressed files)as well as RFC 1950.\item \code{memCompress()} and \code{memDecompress()} support longraw vectors for types \code{"gzip"} and \code{"zx"}.\item \code{sweep()} and \code{slice.index()} can now use namesof dimnames for their \code{MARGIN} argument (\code{apply} hashad this for almost a decade).\item New function \code{proportions()} and\code{marginSums()}. These should replace the unfortunately named\code{prop.table()} and \code{margin.table()}. They are drop-inreplacements, but also add named-margin functionality. The oldfunction names are retained as aliases for back-compatibility.\item Functions \code{rbinom()}, \code{rgeom()}, \code{rhyper()},\code{rpois()}, \code{rnbinom(),} \code{rsignrank()} and\code{rwilcox()} which have returned integer since \R 3.0.0 and hence\code{NA} when the numbers would have been outside the integer range,now return double vectors (without NAs, typically) in these cases.\item \code{matplot(x,y)} (and hence \code{matlines()} and\code{matpoints()}) now call the corresponding methods of\code{plot()} and \code{lines()}, e.g, when \code{x} is a\code{"Date"} or \code{"POSIXct"} object; prompted by Spencer Graves'suggestion.\item \code{stopifnot()} now allows customizing error messages viaargument names, thanks to a patch proposal by Neal Fultz in \PR{17688}.\item \code{unlink()} gains a new argument \code{expand} to disablewildcard and tilde expansion. Elements of \code{x} of value\code{"~"} are now ignored.\item \code{mle()} in the \code{stats4} package has had itsinterface extended so that arguments to the negativelog-likelihood function can be one or more vectors, with similarconventions applying to bounds, start values, and parameter valuesto be kept fixed. This required a minor extension to class\code{"mle"}, so saved objects from earlier versions may need tobe recomputed.\item The default for \code{pdf()} is now\code{useDingbats = FALSE}.\item The default fill colour for \code{hist()} and\code{boxplot()} is now \code{col = "lightgray"}.\item The default order of the levels on the y-axis for\code{spineplot()} and \code{cdplot()} has been reversed.\item If the \env{R_ALWAYS_INSTALL_TESTS} environment variable isset to a true value, \command{R CMD INSTALL} behaves as ifthe \option{--install-tests} option is always specified. Thanks toReinhold Koch for the suggestion.\item New function \code{R_user_dir()} in package \pkg{tools}suggests paths appropriate for storing \R-related user-specificdata, configuration and cache files.\item \code{capabilities()} gains a new logical option \code{Xchk}to avoid warnings about X11-related capabilities.\item The internal implementation of \pkg{grid} units has changed,but the only visible effects at user-level should be\itemize{\item a slightly different print format for some units(especially unit arithmetic),\item faster performance (for unit operations) and\item two new functions \code{unitType()} and \code{unit.psum()}.}Based on code contributed by Thomas Lin Pedersen.\item When internal dispatch for \code{rep.int()}and \code{rep_len()} fails, there is an attempt to dispatch on theequivalent call to \code{rep()}.\item Object \code{.Machine} now contains new \code{longdouble.*}entries (when \R uses long doubles internally).\item \code{news()} has been enhanced to cover the news on \R 3.xand 2.x.\item For consistency, \code{N <- NULL; N[[1]] <- val} now turns\code{N} into a \code{list} also when \code{val)} has length one.This enables \code{dimnames(r1)[[1]] <- "R1"} for a 1-row matrix\code{r1}, fixing \PR{17719} reported by Serguei Sokol.\item \code{deparse(..)}, \code{dump(..)}, and \code{dput(x,control = "all")} now include control option \code{"digits17"}which typically ensures 1:1 invertibility. New option\code{control = "exact"} ensures numeric exact invertibilityvia \code{"hexDigits"}.\item When loading data sets via \code{read.table()},\code{data()} now uses \samp{LC_COLLATE=C} to ensurelocale-independent results for possible string-to-factorconversions.\item A server socket connection, a new connection typerepresenting a listening server socket, is created via\code{serverSocket()} and can accept multiple socket connectionsvia \code{socketAccept()}.\item New function \code{socketTimeout()} changes the connectiontimeout of a socket connection.\item The time needed to start a homogeneous \samp{PSOCK} cluster on\samp{localhost} with many nodes has been significantly reduced(package \pkg{parallel}).\item New \code{globalCallingHandlers()} function to establishglobal condition handlers. This allows registering defaulthandlers for specific condition classes. Developed incollaboration with Lionel Henry.\item New function \code{tryInvokeRestart()} to invoke a specifiedrestart if one is available and return without signaling an errorif no such restart is found. Contributed by Lionel Henry in\PR{17598}.\item \code{str(x)} now shows the length of \code{attributes} in somecases for a data frame \code{x}.\item \code{Rprof()} gains a new argument \code{filter.callframes}to request that intervening call frames due to lazy evaluation orexplicit \code{eval()} calls be omitted from the recorded profiledata. Contributed by Lionel Henry in \PR{17595}.\item The handling of \code{$\{FOO-bar\}} and \code{$\{FOO:-bar\}}in \file{Renviron} files now follows POSIX shells (at least on aUnix-alike), so the first treats empty environment variables asset and the second does not. Previously both ignored emptyvariables. There are several uses of the first form in\file{etc/Renviron}.\item New \code{classes} argument for \code{suppressWarnings()}and \code{suppressMessages()} to selectively suppress onlywarnings or messages that inherit from particular classes.Based on patch from Lionel Henry submitted with \PR{17619}.\item New function \code{activeBindingFunction()} retrieves thefunction of an active binding.\item New \code{"cairoFT"} and \code{"pango"} components in theoutput of \code{grSoftVersion()}.\item New argument \code{symbolfamily} in cairo-based graphicsdevices and new function \code{cairoSymbolFont()} that can be usedto provide the value for that argument.}}% end{ NEW FEATURES }\subsection{Windows}{\itemize{\item \command{Rterm} now works also when invoked from MSYS2terminals. Line editing is possible when command \command{winpty} isinstalled.\item \code{normalizePath()} now resolves symbolic links andnormalizes case of long names of path elements in case-insensitivefolders (\PR{17165}).\item \code{md5sum()} supports UTF-8 file names with charactersthat cannot be translated to the native encoding (\PR{17633}).\item \command{Rterm} gains a new option \option{--workspace} tospecify the workspace to be restored. This allows equals to bepart of the name when opening \emph{via} Windows file associations(reported by Christian Asseburg).\item \command{Rterm} now accepts \code{ALT+xxx} sequences alsowith NumLock on. Tilde can be pasted with an Italian keyboard(\PR{17679}).\item \R falls back to copying when junction creation fails duringpackage checking (patch from Duncan Murdoch).}}\subsection{DEPRECATED AND DEFUNCT}{\itemize{\item Make macro \samp{F77_VISIBILITY} has been removedand replaced by \samp{F_VISIBILITY}.\item Make macros \samp{F77}, \samp{FCPIFCPLAGS} and\samp{SHLIB_OPENMP_FCFLAGS} have been removed and replaced by\samp{FC}, \samp{FPICFLAGS} and \samp{SHLIB_OPENMP_FFLAGS}respectively. (Most \command{make} programs will set \samp{F77}to the value of \samp{FC}, which is set for package compilation.But portable code should not rely on this.)\item The deprecated support for specifying C++98 for packageinstallation has been removed.\item \command{R CMD config} no longer knows about theunused settings \samp{F77} and \samp{FCPIFCPLAGS}, nor\samp{CXX98} and similar.\item Either PCRE2 or PCRE1 >= 8.32 (Nov 2012) is required: thedeprecated provision for 8.20--8.31 has been removed.\item Defunct functions \code{mem.limits()}, \code{.readRDS()},\code{.saveRDS()}, \code{.find.package()}, and \code{.path.package()}from package \pkg{base}and \code{allGenerics()}, \code{getAccess()}, \code{getAllMethods()},\code{getClassName()}, \code{getClassPackage()}, \code{getExtends()},\code{getProperties()}, \code{getPrototype()},\code{getSubclasses()}, \code{getVirtual()}, \code{mlistMetaName()},\code{removeMethodsObject()}, \code{seemsS4Object()},\code{traceOff()}, and \code{traceOn()} from \pkg{methods} have beenremoved.}}\subsection{C-LEVEL FACILITIES}{\itemize{\item \code{installChar} is now remapped in \file{Rinternals.h} to\code{installTrChar}, of which it has been a wrapper since\R\sspace{}3.6.0. Neither are part of the API, but packages using\code{installChar} can replace it if they depend on \samp{R >= 3.6.2}.\item Header \file{R_ext/Print.h} defines \samp{R_USE_C99_IN_CXX}and hence exposes \code{Rvprintf} and \code{REvprintf} if usedwith a C++11 (or later) compiler.\item There are new Fortran subroutines \code{dblepr1},\code{realpr1} and \code{intpr1} to print a scalar variable(\command{gfortran} 10 enforces the distinction between scalarsand length-one arrays). Also \code{labelpr} to print just a label.\item \code{R_withCallingErrorHandler} is now available forestablishing a calling handler in C code for conditions inheritingfrom class \code{error}.}}\subsection{INSTALLATION on a UNIX-ALIKE}{\itemize{\item User-set \samp{DEFS} (e.g., in \file{config.site}) is nowused for compiling packages (including base packages).\item There is a new variant option \option{--enable-lto=check}for checking consistency of BLAS/LAPACK/LINPACK calls --- see\sQuote{Writing R Extensions}.\item A C++ compiler default is set only if the C++11 standard issupported: it no longer falls back to C++98.\item PCRE2 is used if available. To make use of PCRE1 if PCRE2is unavailable, configure with option \option{--with-pcre1}.\item The minimum required version of \code{libcurl} is now 7.28.0(Oct 2012).\item New make target \command{distcheck} checks\itemize{\item \R can be rebuilt from the tarball created by\command{make dist},\item the build from the tarball passes \command{make check-all},\item the build installs and uninstalls,\item the source files are properly cleaned by \command{make distclean}.}}}\subsection{UTILITIES}{\itemize{\item \command{R --help} now mentions the option \command{--no-echo}(renamed from \command{--slave}) and its previously undocumentedshort form \command{-s}.\item \command{R CMD check} now optionally checks\command{configure} and \command{cleanup} scripts fornon-Bourne-shell code (\sQuote{bashisms}).\item \command{R CMD check --as-cran} now runs \code{\\donttest}examples (which are run by \code{example()}) instead ofinstructing the tester to do so. This can be temporarilycircumvented during development by setting environment variable\env{_R_CHECK_DONTTEST_EXAMPLES_} to a false value.}}\subsection{PACKAGE INSTALLATION}{\itemize{\item There is the beginnings of support for the recently approvedC++20 standard, specified analogously to C++14 and C++17. There iscurrently only limited support for this in compilers, with flagssuch as \option{-std=c++20} and \option{-std=c++2a}. For the timebeing the \command{configure} test is of accepting one of theseflags and compiling C++17 code.}}\subsection{BUG FIXES}{\itemize{\item \code{formula(x)} with \code{length(x) > 1} character vectors,is deprecated now. Such use has been rare, and has \sQuote{worked}as expected in some cases only. In other cases, wrong \code{x} havesilently been truncated, not detecting previous errors.\item Long-standing issue where the X11 device could lose eventsshortly after startup has been addressed (\PR{16702}).\item The \code{data.frame} method for \code{rbind()} no longerdrops \code{<NA>} levels from factor columns by default(\PR{17562}).\item \code{available.packages()} and hence \code{install.packages()}now pass their \code{...} argument to \code{download.file()},fulfilling the wish of \PR{17532}; subsequently,\code{available.packages()} gets new argument \code{quiet}, solving\PR{17573}.\item \code{stopifnot()} gets new argument \code{exprObject} to allowan \R object of class \code{expression} (or other \sQuote{language})to work more consistently, thanks to suggestions by Suharto Anggono.\item \code{conformMethod()} now works correctly in cases containinga \dQuote{\code{&&} logic} bug, reported by Henrik Bengtsson. It nowcreates methods with \code{"missing"} entries in the signature.Consequently, \code{rematchDefinition()} is amended to useappropriate \code{.local()} calls with named arguments where needed.\item \code{format.default(*, scientific = FALSE)} now corresponds toa practically most extreme \code{options(scipen = n)} setting ratherthan arbitrary \code{n = 100}.\item \code{format(as.symbol("foo"))} now works (returning \code{"foo"}).\item \code{postscript(.., title = *)} now signals an error whenthe title string contains a character which would produce corruptPostScript, thanks to \PR{17607} by Daisuko Ogawa.\item Certain \code{Ops} (notably comparison such as \code{==}) nowalso work for 0-length data frames, after reports by Hilmar Berger.\item \code{methods(class = class(glm(..)))} now warns more usefullyand only once.\item \code{write.dcf()} no longer mangles field names (\PR{17589}).\item Primitive replacement functions no longer mutate areferenced first argument when used outside of a complexassignment context.\item A better error message for \code{contour(*, levels = Inf)}.\item The return value of \code{contourLines()} is no longer\code{invisible()}.\item The Fortran code for calculating the \code{coefficients}component in \code{lm.influence()} was very inefficient. It has(for now) been replaced with much faster \R{} code (\PR{17624}).\item \code{cm.colors(n)} \emph{etc} no longer append the code for\code{alpha = 1}, \code{"FF"}, to all colors. Hence all eight\code{*.colors()} functions and \code{rainbow()} behaveconsistently and have the same non-explicit default (\PR{17659}).\item \code{dnorm} had a problematic corner case with \code{sd ==-Inf} or negative \code{sd} which was not flagged as an error inall cases. Thanks to Stephen D. Weigand for reporting and WangJiefei for analyzing this; similar change has been made in\code{dlnorm()}.\item The optional \code{iter.smooth} argument of\code{plot.lm()}, (the \code{plot()} method for \code{lm} and\code{glm} fits) now defaults to \code{0} for all \code{glm} fits.Especially for binary observations with high or low fittedprobabilities, this effectively deleted all observations of 1 or0. Also, the type of residuals used in the \code{glm} case hasbeen switched to \code{"pearson"} since deviance residuals do notin general have approximately zero mean.\item In \code{plot.lm}, Cook's distance was computed from unweightedresiduals, leading to inconsistencies. Replaced with usual weightedversion. (\PR{16056})\item Time-series \code{ts(*, start, end, frequency)} withfractional \code{frequency} are supported more consistently;thanks to a report from Johann Kleinbub and analysis and patch byDuncan Murdoch in \PR{17669}.\item In case of errors \code{mcmapply()} now preserves attributesof returned \code{"try-error"} objects and avoids simplification,overriding \code{SIMPLIFY} to \code{FALSE}. (\PR{17653})\item \code{as.difftime()} gets new optional \code{tz = "UTC"}argument which should fix behaviour duringdaylight-savings-changeover days, fixing \PR{16764}, thanks toproposals and analysis by Johannes Ranke and Kirill Müller.\item \code{round()} does a better job of rounding\emph{\dQuote{to nearest}} by \emph{measuring} and\emph{\dQuote{to even}}; thanks to a careful algorithm originallyprompted by the report from Adam Wheeler and then others, in\PR{17668}. \cr \code{round(x, dig)} for \emph{negative} digitsis much more rational now, notably for large \eqn{|dig|}.\item Inheritance information on S4 classes is maintained moreconsistently, particularly in the case of class unions (in partdue to \PR{17596} and a report from Ezra Tucker).\item \code{is()} behaves more robustly when its argument\code{class2} is a \code{classRepresentation} object.\item The warning message when attempting to export an nonexistentclass is now more readable; thanks to Thierry Onkelinx forrecognizing the problem.\item \code{choose()} misbehaved in corner cases where it switched\code{n - k} for \code{k} and \code{n} was only \emph{nearly} integer(report from Erik Scott Wright).\item \code{mle()} in the \code{stats4} package had problemscombining use of box constraints and fixed starting values (inparticular, confidence intervals were affected).\item Operator \code{?} now has lower precedence than \code{=} towork as documented, so \code{=} behaves like \code{<-} in helpexpressions (\PR{16710}).\item \code{smoothEnds(x)} now returns \code{integer} type in\emph{both} cases when \code{x} is \code{integer}, thanks to areport and proposal by Bill Dunlap \PR{17693}.\item The \pkg{methods} package does a better job of trackinginheritance relationships across packages.\item \code{norm(diag(c(1, NA)), "2")} now works.\item \code{subset()} had problems with 0-col dataframes (reportedby Bill Dunlap, \PR{17721}).\item Several cases of integer overflow detected by the\sQuote{undefined behaviour sanitizer} of \command{clang} 10 havebeen circumvented. One in \code{rhyper()} may change thegenerated value for large input values.\item \code{dotchart()} now places the y-axis label (\code{ylab})much better, not overplotting labels, thanks to a report andsuggestion by Alexey Shipunov.%% detected by clang-ASAN in examples/tests of adehabitatHR.\item A rare C-level array overflow in \code{chull()} has beenworked around.\item Some invalid specifications of the day-of-the-year(\emph{via} \code{\%j}, e.g.\sspace{}day 366 in 2017) or weekplus day-of-the-week are now detected by \code{strptime()}.They now return \code{NA} but give a warning as they may havegiven random results or corrupted memory in earlier versions of \R.\item \code{socketConnection(server = FALSE)} now respects theconnection timeout also on Linux.\item \code{socketConnection(server = FALSE)} no longer leaks aconnection that is available right away without waiting (e.g. on\samp{localhost}).\item Socket connections are now robust against spurious readabilityand spurious availability of an incoming connection.\item \code{blocking = FALSE} is now respected also on the server sideof a socket connection, allowing non-blocking read operations.\item \code{anova.glm()} and \code{anova.glmlist()} computedincorrect score (Rao) tests in no-intercept cases. (AndréGillibert, \PR{17735})\item \code{summaryRprof()} now should work correctly for the\code{Rprof(*, memory.profiling=TRUE)} case with small chunk size (and\code{"tseries"} or similar) thanks to a patch proposal by BenjaminTyner, in \PR{15886}.\item \code{xgettext()} ignores strings passed to\code{ngettext()}, since the latter is handled by\code{xngettext()}. Thanks to Daniele Medri for the report and allthe recent work he has done on the Italian translations.\item \code{data(package = "P")} for \code{P} in \pkg{base} and\pkg{stats} no longer reports the data sets from package\pkg{datasets} (which it did for back compatibility for 16 years),fixing \PR{17730}.\item \code{x[[Inf]]} (returning \code{NULL}) no longer leads toundefined behavior, thanks to a report by Kirill Müller in\PR{17756}. Further, \code{x[[-Inf]]} and \code{x[[-n]]} now givemore helpful error messages.\item \code{Gamma()} family sometimes had trouble storinglink name \PR{15891}}}\subsection{BUG FIXES (Windows)}{\itemize{\item \code{Sys.glob()} now supports all charactersfrom the Unicode Basic Multilingual Plane, no longer corruptingsome (less commonly used) characters (\PR{17638}).\item \command{Rterm} now correctly displaysmulti-byte-coded characters representable in the current nativeencoding (at least on Windows 10 they were sometimes omitted,\PR{17632}).\item \code{scan()} issues with UTF-8 data when running in a DBCSlocale have been resolved (\PR{16520}, \PR{16584}).\item \command{Rterm} now accepts enhanced/arrow keys also withConPTY.\item \R can can now be started \emph{via} the launcher icon in auser documents directory whose path is not representable in thesystem encoding.\item \code{socketConnection(server = FALSE)} now returns instantlyalso on Windows when connection failure is signalled.\item Problems with UTF-16 surrogate pairs have been fixed inseveral functions, including \command{tolower()} and\command{toupper()} (\PR{17645}).}}}\section{CHANGES in previous versions}{\itemize{\item Older news can be found in text format in files\ifelse{html}{\href{../NEWS.0}{NEWS.0}, \href{../NEWS.1}{NEWS.1},\href{../NEWS.2}{NEWS.2} andand \href{../NEWS.3}{NEWS.3}}{\file{NEWS.0}, \file{NEWS.1},\file{NEWS.2} and \file{NEWS.3}}in the \file{doc} directory. News in HTML format for\R versions 3.x and from 2.10.0 to 2.15.3 is available at\ifelse{html}{\url{NEWS.3.html}}{\file{doc/html/NEWS.3.html}}and\ifelse{html}{\url{NEWS.2.html}}{\file{doc/html/NEWS.2.html}}.}}