The R Project SVN R

/*
 *  R : A Computer Language for Statistical Data Analysis
 *  Copyright (C) 1995, 1996  Robert Gentleman and Ross Ihaka
 *  Copyright (C) 1997--2003  Robert Gentleman, Ross Ihaka and the
 *                            R Development Core Team
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with this program; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 */

#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

#include "Defn.h"

static int integerOneIndex(int i, int len) {
    int indx = -1;

    if (i > 0)
    indx = i - 1;
    else if (i == 0 || len < 2)
    error("attempt to select less than one element");
    else if (len == 2 && i > -3)
    indx = 2 + i;
    else
    error("attempt to select more than one element");
    return(indx);
}

int OneIndex(SEXP x, SEXP s, int len, int partial, SEXP *newname, int pos)
{
    SEXP names;
    int i, indx, nx;

    if (pos < 0 && length(s) > 1)
    error("attempt to select more than one element");
    if (pos < 0 && length(s) < 1)
    error("attempt to select less than one element");
    if(pos < 0) pos = 0;

    indx = -1;
    *newname = R_NilValue;
    switch(TYPEOF(s)) {
    case LGLSXP:
    case INTSXP:
    indx = integerOneIndex(INTEGER(s)[pos], len);
    break;
    case REALSXP:
    indx = integerOneIndex(REAL(s)[pos], len);
    break;
    case STRSXP:
    nx = length(x);
    names = getAttrib(x, R_NamesSymbol);
    if (names != R_NilValue) {
        /* Try for exact match */
        for (i = 0; i < nx; i++)
        if (streql(CHAR(STRING_ELT(names, i)),
               CHAR(STRING_ELT(s, pos)))) {
            indx = i;
            break;
        }
        /* Try for partial match */
        if (partial && indx < 0) {
        len = strlen(CHAR(STRING_ELT(s, pos)));
        for(i = 0; i < nx; i++) {
            if(!strncmp(CHAR(STRING_ELT(names, i)),
                CHAR(STRING_ELT(s, pos)), len)) {
            if(indx == -1 )
                indx = i;
            else
                indx = -2;
            }
        }
        }
    }
    if (indx == -1)
        indx = nx;
    *newname = STRING_ELT(s, pos);
    break;
    case SYMSXP:
    nx = length(x);
    names = getAttrib(x, R_NamesSymbol);
    if (names != R_NilValue) {
        for (i = 0; i < nx; i++)
        if (streql(CHAR(STRING_ELT(names, i)),
               CHAR(PRINTNAME(s)))) {
            indx = i;
            break;
        }
    }
    if (indx == -1)
        indx = nx;
    *newname = STRING_ELT(s, pos);
    break;
    default:
    error("invalid subscript type");
    }
    return indx;
}

int get1index(SEXP s, SEXP names, int len, Rboolean pok, int pos)
{
/* Get a single index for the [[ operator.
   Check that only one index is being selected.
   pok : is "partial ok" ?
*/
    int indx, i;
    double dblind;

    if (pos < 0 && length(s) != 1) {
    if (length(s) > 1)
        error("attempt to select more than one element");
    else
        error("attempt to select less than one element");
    } else
    if(pos >= length(s))
        error("internal error in use of recursive indexing");
    if(pos < 0) pos = 0;
    indx = -1;
    switch (TYPEOF(s)) {
    case LGLSXP:
    case INTSXP:
    i = INTEGER(s)[pos];
    if(i != NA_INTEGER)
        indx = integerOneIndex(i, len);
    break;
    case REALSXP:
    dblind = REAL(s)[pos];
    if(!ISNAN(dblind))
        indx = integerOneIndex((int)dblind, len);
    break;
    case STRSXP:
    /* Try for exact match */
    for (i = 0; i < length(names); i++)
        if (streql(CHAR(STRING_ELT(names, i)),
               CHAR(STRING_ELT(s, pos)))) {
        indx = i;
        break;
        }
    /* Try for partial match */
    if (pok && indx < 0) {
        len = strlen(CHAR(STRING_ELT(s, pos)));
        for(i = 0; i < length(names); i++) {
        if(!strncmp(CHAR(STRING_ELT(names, i)),
                CHAR(STRING_ELT(s, pos)), len)) {
            if(indx == -1)/* first one */
            indx = i;
            else
            indx = -2;/* more than one partial match */
        }
        }
    }
    break;
    case SYMSXP:
    for (i = 0; i < length(names); i++)
        if (streql(CHAR(STRING_ELT(names, i)), CHAR(PRINTNAME(s)))) {
        indx = i;
        break;
        }
    default:
    error("invalid subscript type");
    }
    return indx;
}

/* Special Matrix Subscripting: Handles the case x[i] where */
/* x is an n-way array and i is a matrix with n columns. */
/* This code returns a vector containing the integer subscripts */
/* to be extracted when x is regarded as unravelled. */

SEXP mat2indsub(SEXP dims, SEXP s)
{
    int tdim, j, i, nrs = nrows(s);
    SEXP rvec;

    PROTECT(rvec = allocVector(INTSXP, nrs));
    s = coerceVector(s, INTSXP);
    setIVector(INTEGER(rvec), nrs, 0);

    /* compute 0-based subscripts */
    for (i = 0; i < nrs; i++) {
    tdim = 1;
    for (j = 0; j < LENGTH(dims); j++) {
        if(INTEGER(s)[i + j * nrs] == NA_INTEGER) {
        INTEGER(rvec)[i] = NA_INTEGER;
        break;
        }
        if (INTEGER(s)[i + j * nrs] > INTEGER(dims)[j])
        error("subscript out of bounds");
        INTEGER(rvec)[i] += (INTEGER(s)[i+j*nrs] - 1) * tdim;
        tdim *= INTEGER(dims)[j];
    }
    /* transform to 1 based subscripting */
    if(INTEGER(rvec)[i] != NA_INTEGER)
        INTEGER(rvec)[i]++;
    }
    UNPROTECT(1);
    return (rvec);
}

static SEXP nullSubscript(int n)
{
    int i;
    SEXP indx;
    indx = allocVector(INTSXP, n);
    for (i = 0; i < n; i++)
    INTEGER(indx)[i] = i + 1;
    return indx;
}

static SEXP logicalSubscript(SEXP s, int ns, int nx, int *stretch)
{
    int canstretch, count, i, nmax;
    SEXP indx;
    canstretch = *stretch;
    if (!canstretch && ns > nx)
    error("(subscript) logical subscript too long");
    nmax = (ns > nx) ? ns : nx;
    *stretch = (ns > nx) ? ns : 0;
    if (ns == 0)
    return(allocVector(INTSXP, 0));
    count = 0;
    for (i = 0; i < nmax; i++)
    if (LOGICAL(s)[i%ns])
        count++;
    indx = allocVector(INTSXP, count);
    count = 0;
    for (i = 0; i < nmax; i++)
    if (LOGICAL(s)[i%ns]) {
        if (LOGICAL(s)[i%ns] == NA_LOGICAL)
        INTEGER(indx)[count++] = NA_INTEGER;
        else
        INTEGER(indx)[count++] = i + 1;
    }
    return indx;
}

static SEXP negativeSubscript(SEXP s, int ns, int nx)
{
    SEXP indx;
    int stretch = 0;
    int i, ix;
    PROTECT(indx = allocVector(INTSXP, nx));
    for (i = 0; i < nx; i++)
    INTEGER(indx)[i] = 1;
    for (i = 0; i < ns; i++) {
    ix = INTEGER(s)[i];
    if (ix != 0 && ix != NA_INTEGER && -ix <= nx)
        INTEGER(indx)[-ix - 1] = 0;
    }
    s = logicalSubscript(indx, nx, nx, &stretch);
    UNPROTECT(1);
    return s;
}

static SEXP positiveSubscript(SEXP s, int ns, int nx)
{
    SEXP indx;
    int i, zct = 0;
    for (i = 0; i < ns; i++) {
    if (INTEGER(s)[i] == 0)
        zct++;
    }
    if (zct) {
    indx = allocVector(INTSXP, (ns - zct));
    for (i = 0, zct = 0; i < ns; i++)
        if (INTEGER(s)[i] != 0)
        INTEGER(indx)[zct++] = INTEGER(s)[i];
    return indx;
    }
    else
    return s;
}

static SEXP integerSubscript(SEXP s, int ns, int nx, int *stretch)
{
    int i, ii, min, max, canstretch;
    Rboolean isna = FALSE;
    canstretch = *stretch;
    *stretch = 0;
    min = 0;
    max = 0;
    for (i = 0; i < ns; i++) {
    ii = INTEGER(s)[i];
    if (ii != NA_INTEGER) {
        if (ii < min)
        min = ii;
        if (ii > max)
        max = ii;
    } else isna = TRUE;
    }
    if (min < -nx)
    error("subscript out of bounds");
    if (max > nx) {
    if(canstretch) *stretch = max;
    else error("subscript out of bounds");
    }
    if (min < 0) {
    if (max == 0 && !isna) return negativeSubscript(s, ns, nx);
    else error("only 0's may mix with negative subscripts");
    }
    else return positiveSubscript(s, ns, nx);
    return R_NilValue;
}

typedef SEXP (*StringEltGetter)(SEXP x, int i);

/* This uses a couple of horrible hacks in conjunction with
 * VectorAssign (in subassign.c).  If subscripting is used for
 * assignment, it is possible to extend a vector by supplying new
 * names, and we want to give the extended vector those names, so they
 * are returned as the attribute. Also, unset elements of the vector
 * of new names (places where a match was found) are indicated by
 * setting the element of the newnames vector to NULL, even though it
 * is a character vector.
*/

/* The original code (pre 2.0.0) used a ns x nx loop that was too
 * slow.  So now we hash.  Hashing is expensive on memory (up to 32nx
 * bytes) so it is only worth doing if ns * nx is large.  If nx is
 * large, then it will be too slow unless ns is very small.
 */

#define USE_HASHING 1
static SEXP stringSubscript(SEXP s, int ns, int nx, SEXP names,
                StringEltGetter strg, int *stretch, Rboolean in)
{
    SEXP indx, indexnames;
    int i, j, nnames, sub, extra;
    int canstretch = *stretch;
#ifdef USE_HASHING
    Rboolean usehashing = in && (ns * nx > 1000);
#else
    Rboolean usehashing = FALSE;
#endif

    PROTECT(s);
    PROTECT(names);
    PROTECT(indexnames = allocVector(STRSXP, ns));
    nnames = nx;
    extra = nnames;

    /* Process each of the subscripts. First we compare with the names
     * on the vector and then (if there is no match) with each of the
     * previous subscripts, since (if assigning) we may have already
     * added an element of that name. (If we are not assigning, any
     * nonmatch will have given an error.)
     */

#ifdef USE_HASHING
    if(usehashing) {
    /* must be internal, so names contains a character vector */
    PROTECT(indx = match(names, s, 0));
    for (i = 0; i < ns; i++) SET_STRING_ELT(indexnames, i, R_NilValue);
    } else {
#endif
    PROTECT(indx = allocVector(INTSXP, ns));
    for (i = 0; i < ns; i++) {
        sub = 0;
        if (names != R_NilValue) {
        for (j = 0; j < nnames; j++) {
            SEXP names_j = strg(names, j);
            if (!in && TYPEOF(names_j) != CHARSXP)
            error("character vector element does not have type CHARSXP");
            if (NonNullStringMatch(STRING_ELT(s, i), names_j)) {
            sub = j + 1;
            SET_STRING_ELT(indexnames, i, R_NilValue);
            break;
            }
        }
        }
        INTEGER(indx)[i] = sub;
    }
#ifdef USE_HASHING
    }
#endif

    for (i = 0; i < ns; i++) {
    sub = INTEGER(indx)[i];
    if (sub == 0) {
        for (j = 0 ; j < i ; j++)
        if (NonNullStringMatch(STRING_ELT(s, i), STRING_ELT(s, j))) {
            sub = INTEGER(indx)[j];
            SET_STRING_ELT(indexnames, i, STRING_ELT(s, j));
            break;
        }
    }
    if (sub == 0) {
        if (!canstretch)
        error("subscript out of bounds");
        extra += 1;
        sub = extra;
        SET_STRING_ELT(indexnames, i, STRING_ELT(s, i));
    }
    INTEGER(indx)[i] = sub;
    }
    /* Ghastly hack!  We attach the new names to the attribute */
    /* slot on the returned subscript vector. */
    if (extra != nnames)
    SET_ATTRIB(indx, indexnames);
    if (canstretch)
    *stretch = extra;
    UNPROTECT(4);
    return indx;
}

/* Array Subscripts.
    dim is the dimension (0 to k-1)
    s is the subscript list,
    dims is the dimensions of x
    dng is a function (usually getAttrib) that obtains the dimnames
    x is the array to be subscripted.
*/

typedef SEXP AttrGetter(SEXP x, SEXP data);

static SEXP 
int_arraySubscript(int dim, SEXP s, SEXP dims, AttrGetter dng,
           StringEltGetter strg, SEXP x, Rboolean in)
{
    int nd, ns, stretch = 0;
    SEXP dnames, tmp;
    ns = length(s);
    nd = INTEGER(dims)[dim];

    switch (TYPEOF(s)) {
    case NILSXP:
    return allocVector(INTSXP, 0);
    case LGLSXP:
    return logicalSubscript(s, ns, nd, &stretch);
    case INTSXP:
    return integerSubscript(s, ns, nd, &stretch);
    case REALSXP:
        PROTECT(tmp = coerceVector(s, INTSXP));
    tmp = integerSubscript(tmp, ns, nd, &stretch);
        UNPROTECT(1);
    return tmp;
    case STRSXP:
    dnames = dng(x, R_DimNamesSymbol);
    if (dnames == R_NilValue)
        error("no dimnames attribute for array");
    dnames = VECTOR_ELT(dnames, dim);
    return stringSubscript(s, ns, nd, dnames, strg, &stretch, in);
    case SYMSXP:
    if (s == R_MissingArg)
        return nullSubscript(nd);
    default:
    error("invalid subscript");
    }
    return R_NilValue;
}

SEXP arraySubscript(int dim, SEXP s, SEXP dims, AttrGetter dng,
            StringEltGetter strg, SEXP x)
{
    return int_arraySubscript(dim, s, dims, dng, strg, x, TRUE);
}

/* Subscript creation.  The first thing we do is check to see */
/* if there are any user supplied NULL's, these result in */
/* returning a vector of length 0. */
/* if stretch is zero on entry then the vector x cannot be
   "stretched",
   otherwise, stretch returns the new required length for x
*/

SEXP makeSubscript(SEXP x, SEXP s, int *stretch)
{
    int nx;
    SEXP ans;

    ans = R_NilValue;
    if (isVector(x) || isList(x) || isLanguage(x)) {
    nx = length(x);

    ans = vectorSubscript(nx, s, stretch, getAttrib, (STRING_ELT), x);
    }
    else error("subscripting on non-vector");
    return ans;

}

/* nx is the length of the object being subscripted,
   s is the R subscript value,
   dng gets a given attrib for x, which is the object we are
   subsetting,
*/

static SEXP 
int_vectorSubscript(int nx, SEXP s, int *stretch, AttrGetter dng,
            StringEltGetter strg, SEXP x, Rboolean in)
{
    int ns;
    SEXP ans=R_NilValue, tmp;

    ns = length(s);
    /* special case for simple indices -- does not duplicate */
    if (ns == 1 && TYPEOF(s) == INTSXP && ATTRIB(s) == R_NilValue) {
    int i = INTEGER(s)[0];
    if (0 < i && i <= nx) {
        *stretch = 0;
        return s;
    }
    }
    PROTECT(s=duplicate(s));
    SET_ATTRIB(s, R_NilValue);
    switch (TYPEOF(s)) {
    case NILSXP:
    *stretch = 0;
    ans = allocVector(INTSXP, 0);
    break;
    case LGLSXP:
    /* *stretch = 0; */
    ans = logicalSubscript(s, ns, nx, stretch);
    break;
    case INTSXP:
        ans = integerSubscript(s, ns, nx, stretch);
        break;
    case REALSXP:
    PROTECT(tmp = coerceVector(s, INTSXP));
    ans = integerSubscript(tmp, ns, nx, stretch);
    UNPROTECT(1);
    break;
    case STRSXP:
    {
    SEXP names = dng(x, R_NamesSymbol);
    /* *stretch = 0; */
    ans = stringSubscript(s, ns, nx, names, strg, stretch, in);
    }
    break;
    case SYMSXP:
    *stretch = 0;
    if (s == R_MissingArg) {
        ans = nullSubscript(nx);
        break;
    }
    default:
    error("invalid subscript type");
    }
    UNPROTECT(1);
    return ans;
}


SEXP vectorSubscript(int nx, SEXP s, int *stretch, AttrGetter dng,
             StringEltGetter strg, SEXP x)
{
    return int_vectorSubscript(nx, s, stretch, dng, strg, x, TRUE);
}