R – /branches/djm-source/src/library/stats/NAMESPACE

Rev 42208 – Recreate branch from trunk

murdoch — Thu, 12 Jul 2007 12:57:45 +0000

murdoch – 1 file(s) modified
Recreate branch from trunk

+ /branches/djm-source (copied from /trunk@42207)

Rev 41573 – migrate gls/lme vcov methods to nlme (in 3.1-81)

ripley — Tue, 15 May 2007 08:58:40 +0000

ripley – 4 file(s) modified
migrate gls/lme vcov methods to nlme (in 3.1-81)

~ /trunk/NEWS
~ /trunk/src/library/stats/man/vcov.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/vcov.R

Rev 40852 – screeplot (S3)generic & default method

maechler — Sat, 17 Mar 2007 19:31:06 +0000

maechler – 6 file(s) modified
screeplot (S3)generic & default method

~ /trunk/NEWS
~ /trunk/src/library/stats/man/prcomp.Rd
~ /trunk/src/library/stats/man/screeplot.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/prcomp.R
~ /trunk/src/library/stats/R/princomp-add.R

Rev 40817 – fixing a buglet that crept in from the change to ...

rgentlem — Tue, 06 Mar 2007 16:03:50 +0000

rgentlem – 2 file(s) modified
fixing a buglet that crept in from the change to have $ warn
when applied to an atomic vector

~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/models.R

Rev 40440 – add get_all_vars

ripley — Thu, 11 Jan 2007 03:24:07 +0000

ripley – 4 file(s) modified
add get_all_vars

~ /trunk/NEWS
~ /trunk/src/library/stats/man/model.frame.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/models.R

Rev 39170 – tweaks

ripley — Thu, 07 Sep 2006 15:06:41 +0000

ripley – 2 file(s) modified
tweaks

~ /trunk/src/library/base/R/methodsSupport.R
~ /trunk/src/library/stats/NAMESPACE

Rev 39137 – temporarily export median.default for package 'rv'

ripley — Wed, 06 Sep 2006 06:59:46 +0000

ripley – 1 file(s) modified
temporarily export median.default for package 'rv'

~ /trunk/src/library/stats/NAMESPACE

Rev 39116 – make median S3-generic improve detection of undeclared methods-using packages

ripley — Tue, 05 Sep 2006 10:44:15 +0000

ripley – 7 file(s) modified
make median S3-generic
improve detection of undeclared methods-using packages

~ /trunk/doc/manual/R-exts.texi
~ /trunk/NEWS
~ /trunk/src/library/base/man/sort.Rd
~ /trunk/src/library/stats/man/median.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/median.R
~ /trunk/src/library/tools/R/QC.R

Rev 39002 – migrate r2dtable to package stats

ripley — Tue, 29 Aug 2006 08:15:09 +0000

ripley – 10 file(s) modified
migrate r2dtable to package stats

~ /trunk/NEWS
x /trunk/src/library/base/man/r2dtable.Rd
~ /trunk/src/library/base/R/table.R
+ /trunk/src/library/stats/man/r2dtable.Rd (copied from /trunk/src/library/base/man/r2dtable.Rd@38998)
~ /trunk/src/library/stats/NAMESPACE
+ /trunk/src/library/stats/R/r2dtable.R
~ /trunk/src/library/stats/src/init.c
~ /trunk/src/main/basedecl.h
~ /trunk/src/main/random.c
~ /trunk/src/main/registration.c

Rev 38956 – do_bind was not using R_LookupMethod and hence missing registered methods

ripley — Tue, 22 Aug 2006 20:12:45 +0000

ripley – 4 file(s) modified
do_bind was not using R_LookupMethod and hence missing registered methods

~ /trunk/NEWS
~ /trunk/src/include/Defn.h
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/main/bind.c

Rev 38910 – factor out format.ftable() from write.ftable

maechler — Thu, 17 Aug 2006 12:35:58 +0000

maechler – 7 file(s) modified
factor out format.ftable() from write.ftable

~ /trunk/NEWS
~ /trunk/src/library/stats/man/read.ftable.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/ftable.R
~ /trunk/src/library/utils/man/head.Rd
~ /trunk/src/library/utils/NAMESPACE
~ /trunk/src/library/utils/R/head.R

Rev 38242 – add [<-.ts

ripley — Wed, 31 May 2006 16:24:46 +0000

ripley – 5 file(s) modified
add [<-.ts

~ /trunk/NEWS
~ /trunk/src/library/stats/man/ts.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/ts.R
~ /trunk/tests/reg-tests-1.R

Rev 38104 – add an as.data.frame method for ftable

ripley — Thu, 18 May 2006 07:23:51 +0000

ripley – 5 file(s) modified
add an as.data.frame method for ftable

~ /trunk/NEWS
~ /trunk/src/library/stats/man/ftable.Rd
~ /trunk/src/library/stats/man/read.ftable.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/ftable.R

Rev 37215 – take profiler() internal

ripley — Tue, 31 Jan 2006 10:20:35 +0000

ripley – 4 file(s) modified
take profiler() internal

~ /trunk/src/library/stats/man/nls.Rd
~ /trunk/src/library/stats/man/profile.nls.Rd
x /trunk/src/library/stats/man/profiler.Rd
~ /trunk/src/library/stats/NAMESPACE

Rev 37159 – no longer export nlsModel, since it is intimately connected to ...

ripley — Tue, 24 Jan 2006 15:29:48 +0000

ripley – 4 file(s) modified
no longer export nlsModel, since it is intimately connected to nls internals
and so has had to changed considerably to support algorithm="port"

~ /trunk/NEWS
~ /trunk/src/library/stats/man/nls.Rd
x /trunk/src/library/stats/man/nlsModel.Rd
~ /trunk/src/library/stats/NAMESPACE

Rev 36918 – Support in useDynLib() for a prefix and postfix via the ...

duncan — Fri, 30 Dec 2005 08:39:29 +0000

duncan – 38 file(s) modified
Support in useDynLib() for a prefix and postfix via the .fixes
argument. Reorganization of the computations for mapping native
symbols in name space so more of it happens when the NAMESPACE file is
parsed, i.e. at installation. And changed several of the base packages
to use this registration approach. stats still has some of the
original name/PACKAGE. This allows us to test both mechanisms. stats
also uses the prefix. Will add documentation for new functions in
base later or move them into the parseNamespace() function. If we use
the .registration in grDevices, we get a warning on Windows about
savePlot being an existing R variable. This is legitimate, so we
explicitly enumerate the symbols. We will have to add an .omit
argument to useDynLib() or use a different prefix or explicitly map
all symbols. Or we can use additional useDynLib directives in the
conditional statements.

~ /trunk/src/library/base/R/namespace.R
~ /trunk/src/library/grDevices/NAMESPACE
~ /trunk/src/library/grDevices/R/calc.R
~ /trunk/src/library/grDevices/R/pictex.R
~ /trunk/src/library/grDevices/R/postscript.R
~ /trunk/src/library/grid/NAMESPACE
~ /trunk/src/library/grid/R/grab.R
~ /trunk/src/library/grid/R/grid.R
~ /trunk/src/library/grid/R/unit.R
~ /trunk/src/library/grid/R/util.R
~ /trunk/src/library/grid/R/zzz.R
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/acf.R
~ /trunk/src/library/stats/R/ansari.test.R
~ /trunk/src/library/stats/R/ar.burg.mts.R
~ /trunk/src/library/stats/R/ar.burg.R
~ /trunk/src/library/stats/R/ar.R
~ /trunk/src/library/stats/R/ar.yw.mts.R
~ /trunk/src/library/stats/R/arima.R
~ /trunk/src/library/stats/R/arma0.R
~ /trunk/src/library/stats/R/ARMAtheory.R
~ /trunk/src/library/stats/R/bandwidths.R
~ /trunk/src/library/stats/R/chisq.test.R
~ /trunk/src/library/stats/R/cmdscale.R
~ /trunk/src/library/stats/R/loess.R
~ /trunk/src/library/stats/R/mantelhaen.test.R
~ /trunk/src/library/stats/R/nlminb.R
~ /trunk/src/library/stats/R/nls-profile.R
~ /trunk/src/library/stats/R/nls.R
~ /trunk/src/library/stats/R/ppr.R
~ /trunk/src/library/stats/R/runmed.R
~ /trunk/src/library/stats/R/shapiro.test.R
~ /trunk/src/library/stats/R/smspline.R
~ /trunk/src/library/stats/R/stl.R
~ /trunk/src/library/stats/R/StructTS.R
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/md5.R
~ /trunk/src/library/tools/R/utils.R

Rev 36859 – more twweaks to nls, including getting df.residual right with zero ...

ripley — Mon, 26 Dec 2005 08:42:48 +0000

ripley – 6 file(s) modified
more twweaks to nls, including getting df.residual right with zero weights

~ /trunk/NEWS
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/nls-profile.R
~ /trunk/src/library/stats/R/nls.R
~ /trunk/src/library/stats/tests/nls.R
~ /trunk/src/library/stats/tests/nls.Rout.save

Rev 36610 – Fixup misspelled mauchly.test (port to r-patched eventually)

pd — Mon, 05 Dec 2005 00:50:32 +0000

pd – 6 file(s) modified
Fixup misspelled mauchly.test (port to r-patched eventually)

~ /trunk/NEWS
x /trunk/src/library/stats/man/mauchley.test.Rd
+ /trunk/src/library/stats/man/mauchly.test.Rd
+ /trunk/src/library/stats/man/stats-deprecated.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/mlm.R

Rev 35467 – S3 generic "simulate" and method for lm class

bates — Wed, 31 Aug 2005 18:04:02 +0000

bates – 5 file(s) modified
S3 generic "simulate" and method for lm class

~ /trunk/NEWS
+ /trunk/src/library/stats/man/simulate.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/lm.R
~ /trunk/src/library/stats/R/models.R

Rev 35419 – move iconv from utils to base (as it is used ...

ripley — Fri, 26 Aug 2005 08:34:29 +0000

ripley – 17 file(s) modified
move iconv from utils to base (as it is used in tools etc).
split up Defunct.R into parts appropriate to current packages.
use methods::as in read.table.

~ /trunk/NEWS
~ /trunk/src/library/base/man/base-defunct.Rd
+ /trunk/src/library/base/man/iconv.Rd (copied from /trunk/src/library/utils/man/iconv.Rd@35416)
~ /trunk/src/library/base/R/Defunct.R
~ /trunk/src/library/base/R/New-Internal.R
~ /trunk/src/library/base/R/readtable.R
+ /trunk/src/library/graphics/man/graphics-defunct.Rd
~ /trunk/src/library/graphics/NAMESPACE
~ /trunk/src/library/graphics/R/zzz.R
~ /trunk/src/library/stats/NAMESPACE
+ /trunk/src/library/stats/R/stats-defunct.R
~ /trunk/src/library/tools/R/packageshtml.R
~ /trunk/src/library/tools/R/QC.R
~ /trunk/src/library/tools/R/Rd.R
x /trunk/src/library/utils/man/iconv.Rd
~ /trunk/src/library/utils/NAMESPACE
~ /trunk/src/library/utils/R/iconv.R

Rev 34497 – Added nlminb and supporting source files

bates — Sat, 28 May 2005 18:13:07 +0000

bates – 10 file(s) modified
Added nlminb and supporting source files

~ /trunk/src/library/stats/COPYRIGHTS.modreg
+ /trunk/src/library/stats/COPYRIGHTS.portsrc
+ /trunk/src/library/stats/man/nlminb.Rd
~ /trunk/src/library/stats/NAMESPACE
+ /trunk/src/library/stats/R/nlminb.R
~ /trunk/src/library/stats/src/init.c
~ /trunk/src/library/stats/src/Makefile.in
+ /trunk/src/library/stats/src/port.c
+ /trunk/src/library/stats/src/port.h
+ /trunk/src/library/stats/src/portsrc.f

Rev 34424 – use extendrange() in plot.lm()

maechler — Thu, 19 May 2005 13:31:11 +0000

maechler – 2 file(s) modified
use extendrange() in plot.lm()

~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/plot.lm.R

Rev 34180 – add a labels method for dist objects

ripley — Thu, 05 May 2005 15:08:29 +0000

ripley – 4 file(s) modified
add a labels method for dist objects

~ /trunk/NEWS
~ /trunk/src/library/stats/man/dist.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/dist.R

Rev 34133 – Export density.default

maechler — Sat, 30 Apr 2005 20:03:56 +0000

maechler – 1 file(s) modified
Export density.default

~ /trunk/src/library/stats/NAMESPACE

Rev 34131 – oops, forgotten in rev. 34130

maechler — Sat, 30 Apr 2005 19:39:17 +0000

maechler – 1 file(s) modified
oops, forgotten in rev. 34130

~ /trunk/src/library/stats/NAMESPACE

Rev 34064 – smooth.spline(*, keep.data=TRUE) and residuals(), fitted()

maechler — Wed, 27 Apr 2005 17:06:26 +0000

maechler – 3 file(s) modified
smooth.spline(*, keep.data=TRUE) and residuals(), fitted()

~ /trunk/src/library/stats/man/smooth.spline.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/smspline.R

Rev 33749 – add default, glm and nls methods for confint

ripley — Mon, 28 Mar 2005 11:51:47 +0000

ripley – 4 file(s) modified
add default, glm and nls methods for confint

~ /trunk/NEWS
~ /trunk/src/library/stats/man/confint.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/confint.R

Rev 33643 – Make vcov work on mlm objects

pd — Tue, 15 Mar 2005 17:34:54 +0000

pd – 4 file(s) modified
Make vcov work on mlm objects

~ /trunk/NEWS
~ /trunk/src/library/stats/man/vcov.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/vcov.R

Rev 33627 – mlm changes

pd — Mon, 14 Mar 2005 18:17:50 +0000

pd – 6 file(s) modified
mlm changes

~ /trunk/configure
~ /trunk/NEWS
~ /trunk/src/library/stats/man/anova.lm.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/manova.R
~ /trunk/src/library/stats/R/mlm.R

Rev 33098 – Move contr.SAS to stats package

bates — Tue, 08 Feb 2005 14:00:10 +0000

bates – 4 file(s) modified
Move contr.SAS to stats package

~ /trunk/NEWS
~ /trunk/src/library/stats/man/contrast.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/contrast.R

Rev 32192 – migrate lm and terms methods for labels to stats

ripley — Mon, 13 Dec 2004 17:37:57 +0000

ripley – 7 file(s) modified
migrate lm and terms methods for labels to stats

~ /trunk/src/library/base/man/labels.Rd
~ /trunk/src/library/base/R/labels.R
~ /trunk/src/library/stats/man/lm.summaries.Rd
~ /trunk/src/library/stats/man/terms.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/lm.R
~ /trunk/src/library/stats/R/models.R

Rev 32125 – New cophenetic() method for objects of class "dendrogram". Remove S3 ...

hornik — Mon, 06 Dec 2004 11:24:12 +0000

hornik – 1 file(s) modified
New cophenetic() method for objects of class "dendrogram".
Remove S3 methods for getting/setting names of "dist" objects.

~ /trunk/src/library/stats/NAMESPACE

Rev 32084 – make as.ts generic

ripley — Thu, 02 Dec 2004 09:10:42 +0000

ripley – 4 file(s) modified
make as.ts generic

~ /trunk/NEWS
~ /trunk/src/library/stats/man/ts.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/ts.R

Rev 32059 – Make as.ist() and cophenetic() generic.

hornik — Sat, 27 Nov 2004 11:17:25 +0000

hornik – 6 file(s) modified
Make as.ist() and cophenetic() generic.

~ /trunk/src/library/stats/man/cophenetic.Rd
~ /trunk/src/library/stats/man/dist.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/dist.R
~ /trunk/src/library/stats/R/hclust.R
~ /trunk/tests/isas-tests.Rout.save

Rev 31993 – add print method for kmeans

ripley — Sun, 21 Nov 2004 23:18:00 +0000

ripley – 4 file(s) modified
add print method for kmeans

~ /trunk/NEWS
~ /trunk/src/library/stats/man/kmeans.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/kmeans.R

Rev 31570 – move approx{fun} from base to stats

ripley — Sat, 23 Oct 2004 07:47:06 +0000

ripley – 6 file(s) modified
move approx{fun} from base to stats

x /trunk/src/library/base/man/approxfun.Rd
x /trunk/src/library/base/R/approx.R
+ /trunk/src/library/base/R/findInt.R (copied from /trunk/src/library/base/R/approx.R@31566)
+ /trunk/src/library/stats/man/approxfun.Rd (copied from /trunk/src/library/base/man/approxfun.Rd@31566)
~ /trunk/src/library/stats/NAMESPACE
+ /trunk/src/library/stats/R/approx.R (copied from /trunk/src/library/base/R/approx.R@31566)

Rev 31405 – make na.contigous generic

ripley — Thu, 14 Oct 2004 14:32:47 +0000

ripley – 4 file(s) modified
make na.contigous generic

~ /trunk/NEWS
~ /trunk/src/library/stats/man/na.contiguous.Rd
~ /trunk/src/library/stats/NAMESPACE
~ /trunk/src/library/stats/R/na.ts.R

Rev 31139 – add reorder.factor, from Deepayan Sarkar

ripley — Tue, 14 Sep 2004 06:49:46 +0000

ripley – 4 file(s) modified
add reorder.factor, from Deepayan Sarkar

~ /trunk/NEWS
+ /trunk/src/library/stats/man/reorder.factor.Rd
~ /trunk/src/library/stats/NAMESPACE
+ /trunk/src/library/stats/R/reorder.factor.R

Rev 30947 – Allow running checks under a minimal set of packages (datasets)

ripley — Mon, 30 Aug 2004 19:48:29 +0000

ripley – 2 file(s) modified
Allow running checks under a minimal set of packages (datasets)

~ /trunk/src/library/grDevices/man/palettes.Rd
~ /trunk/src/library/stats/NAMESPACE

Rev 30916 – chull depends on xy.coords in graphics convolve, fft are not ...

ripley — Sun, 29 Aug 2004 15:35:25 +0000

ripley – 14 file(s) modified
chull depends on xy.coords in graphics
convolve, fft are not used in base.

x /trunk/src/library/base/man/chull.Rd
x /trunk/src/library/base/man/convolve.Rd
x /trunk/src/library/base/man/fft.Rd
x /trunk/src/library/base/man/nextn.Rd
x /trunk/src/library/base/R/chull.R
x /trunk/src/library/base/R/fft.R
+ /trunk/src/library/graphics/man/chull.Rd (copied from /trunk/src/library/base/man/chull.Rd@30915)
~ /trunk/src/library/graphics/NAMESPACE
+ /trunk/src/library/graphics/R/chull.R (copied from /trunk/src/library/base/R/chull.R@30914)
+ /trunk/src/library/stats/man/convolve.Rd (copied from /trunk/src/library/base/man/convolve.Rd@30914)
+ /trunk/src/library/stats/man/fft.Rd (copied from /trunk/src/library/base/man/fft.Rd@30914)
+ /trunk/src/library/stats/man/nextn.Rd (copied from /trunk/src/library/base/man/nextn.Rd@30915)
~ /trunk/src/library/stats/NAMESPACE
+ /trunk/src/library/stats/R/fft.R (copied from /trunk/src/library/base/R/fft.R@30914)