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These files are shell and perl scripts used for configuring/building R.
They are not required at run time, and hence not installed.

The files are as follows.

  config.guess
  config.sub
  install-sh
  mdate-sh
  missing
  mkinstalldirs
    standard tools from GNU autoconf.  Taken from the autoconf CVS
    (pserver:anoncvs@subversions.gnu.org:/cvsroot/autoconf, module 
    `autoconf').

  GETCONFIG
    create API `Rconfig.h' from the configure information in
    `config.h'.
  GETMAKEVAL
    get the value of a Make variable from a Makefile [this needs to
    be improved].
  GETVERSION
    create API `Rversion.h' from `VERSION' and `date-stamp'.
  
  Rdnewer.pl
    determine whether any Rd file in an Rd tree is newer than a
    given file.
  
  copy-if-change
    copy a file if changed; otherwise, do nothing.

  help2man.pl
    generate simple manual pages from program output.  Taken from
    the GNU help2man package (ftp://ftp.gnu.org/gnu/help2man/).
    
  install-info.pl
    create or update entry in Info directory.  Taken from the Debian
    GNU/Linux stable distribution.

  keywords2html.pl
    convert `KEYWORDS.db' to HTML.
    
  ldAIX4
    writes an export file, assembling the exported symbols by
    reading the output of nm.  This file is needed on AIX (4.2 and
    later) to compile shared libs.

  link-recommended
    create links with simplified names to the recommended packages.
  
  linkcheck.pl
    comment out links that are not available.

  ltmain.sh
    provide generalized library-building support services.  Taken
    from the libtool CVS
    (pserver:anoncvs@subversions.gnu.org:/cvsroot/libtool).

  move-if-change
    move a file if changed; otherwise, remove.

  pkg2tex.pl
    create a single `PKGNAME-pkg.tex' file from the package docs in
    LaTeX format.

  rsync-recommended
    obtain sources for the recommended packages using rsync, and then
    create links with simplified names to these.