R – /branches/R-conflicts/src/library/tools/NAMESPACE

Rev 76063 – Merged changes from trunk through 76062

luke — Tue, 05 Feb 2019 23:19:55 +0000

luke – 236 file(s) modified
Merged changes from trunk through 76062

~ /branches/R-conflicts/config.site
~ /branches/R-conflicts/configure
~ /branches/R-conflicts/configure.ac
~ /branches/R-conflicts/doc/CRAN_mirrors.csv
~ /branches/R-conflicts/doc/manual/Makefile.in
~ /branches/R-conflicts/doc/manual/Makefile.win
~ /branches/R-conflicts/doc/manual/R-admin.texi
~ /branches/R-conflicts/doc/manual/R-exts.texi
~ /branches/R-conflicts/doc/manual/R-ints.texi
~ /branches/R-conflicts/doc/NEWS.Rd
~ /branches/R-conflicts/etc/Makeconf.in
~ /branches/R-conflicts/m4/cxx_11.m4
~ /branches/R-conflicts/m4/libtool.m4
~ /branches/R-conflicts/m4/R.m4
~ /branches/R-conflicts/Makeconf.in
~ /branches/R-conflicts/Makefile.in
~ /branches/R-conflicts/share/texmf/bibtex/bib/RJournal.bib
~ /branches/R-conflicts/src/appl/lbfgsb.c
~ /branches/R-conflicts/src/appl/Makefile.in
~ /branches/R-conflicts/src/extra/tzone/Make.zi
~ /branches/R-conflicts/src/extra/tzone/Notes
~ /branches/R-conflicts/src/extra/tzone/zoneinfo.zip
~ /branches/R-conflicts/src/gnuwin32/cran/index.in
~ /branches/R-conflicts/src/gnuwin32/cran/Makefile
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+ /branches/R-conflicts/tests/Pkgs/pkgC (copied from /trunk/tests/Pkgs/pkgC@76062)
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Rev 75453 – Create branch for experimenting with search path conflict resolution.

luke — Thu, 18 Oct 2018 16:45:09 +0000

luke – 1 file(s) modified
Create branch for experimenting with search path conflict resolution.

+ /branches/R-conflicts (copied from /trunk@75452)

Rev 75290 – Deprecate vignetteDepends() as it calls code deprecated since rev 70156, ...

maechler — Wed, 12 Sep 2018 09:18:06 +0000

maechler – 6 file(s) modified
Deprecate vignetteDepends() as it calls code deprecated since rev 70156, Feb.2016; export vignetteInfo()

~ /trunk/src/library/tools/man/tools-deprecated.Rd
x /trunk/src/library/tools/man/vignetteDepends.Rd
+ /trunk/src/library/tools/man/vignetteInfo.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/tools-deprecated.R
~ /trunk/src/library/tools/R/Vignettes.R

Rev 75069 – news() gets support for 'NEWS.md' files.

hornik — Mon, 06 Aug 2018 11:30:00 +0000

hornik – 6 file(s) modified
news() gets support for 'NEWS.md' files.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/DESCRIPTION.in
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/news.R
~ /trunk/src/library/tools/R/toHTML.R
~ /trunk/src/library/utils/man/news.Rd

Rev 75015 – Add .check_S3_methods_needing_delayed_registration().

hornik — Mon, 30 Jul 2018 17:07:07 +0000

hornik – 2 file(s) modified
Add .check_S3_methods_needing_delayed_registration().

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/QC.R

Rev 73883 – add check for pragmas disallowed by CRAN

ripley — Mon, 11 Dec 2017 10:44:10 +0000

ripley – 4 file(s) modified
add check for pragmas disallowed by CRAN

~ /trunk/doc/manual/R-ints.texi
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R
~ /trunk/src/library/tools/R/QC.R

Rev 73478 – Improve URL checking.

hornik — Fri, 06 Oct 2017 14:22:50 +0000

hornik – 2 file(s) modified
Improve URL checking.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/urltools.R

Rev 72885 – Allow subscripting check details changes according to changes in severity.

hornik — Tue, 04 Jul 2017 08:24:58 +0000

hornik – 3 file(s) modified
Allow subscripting check details changes according to changes in severity.

~ /trunk/src/library/tools/man/check_packages_in_dir.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/checktools.R

Rev 72696 – Add CRAN_check_issues().

hornik — Thu, 18 May 2017 21:07:48 +0000

hornik – 4 file(s) modified
Add CRAN_check_issues().

~ /trunk/src/library/tools/man/CRANtools.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/CRANtools.R
~ /trunk/tests/Examples/tools-Ex.Rout.save

Rev 72546 – Add toHTML() method for citation objects.

hornik — Wed, 19 Apr 2017 11:05:40 +0000

hornik – 2 file(s) modified
Add toHTML() method for citation objects.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/toHTML.R

Rev 72099 – start documenting package_native_routine_registration_skeleton

ripley — Fri, 03 Feb 2017 19:11:06 +0000

ripley – 5 file(s) modified
start documenting package_native_routine_registration_skeleton

~ /trunk/doc/manual/R-exts.texi
+ /trunk/src/library/tools/man/package_native_routine_registration_skeleton.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/sotools.R
~ /trunk/src/library/utils/man/package.skeleton.Rd

Rev 71981 – R CMD check optionally reports on non-use of registration of ...

ripley — Mon, 16 Jan 2017 06:52:06 +0000

ripley – 4 file(s) modified
R CMD check optionally reports on non-use of registration of native symbols

~ /trunk/doc/manual/R-ints.texi
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R
~ /trunk/src/library/tools/R/sotools.R

Rev 71818 – Document and export check_packages_in_dir_details() and several CRAN tools.

hornik — Mon, 19 Dec 2016 15:14:51 +0000

hornik – 6 file(s) modified
Document and export check_packages_in_dir_details() and several
CRAN tools.

~ /trunk/src/library/tools/man/check_packages_in_dir.Rd
+ /trunk/src/library/tools/man/CRANtools.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/checktools.R
~ /trunk/tests/Examples/tools-Ex.Rout.save
~ /trunk/tests/no-segfault.Rin

Rev 70951 – more consistent mapping of nativeRoutine object names

ripley — Thu, 21 Jul 2016 07:30:04 +0000

ripley – 20 file(s) modified
more consistent mapping of nativeRoutine object names

~ /trunk/src/library/grid/R/unit.R
~ /trunk/src/library/grid/src/grid.h
~ /trunk/src/library/grid/src/register.c
~ /trunk/src/library/grid/src/unit.c
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/build.R
~ /trunk/src/library/tools/R/dynamicHelp.R
~ /trunk/src/library/tools/R/install.R
~ /trunk/src/library/tools/R/md5.R
~ /trunk/src/library/tools/R/parseLatex.R
~ /trunk/src/library/tools/R/parseRd.R
~ /trunk/src/library/tools/R/QC.R
~ /trunk/src/library/tools/R/Rd2txt.R
~ /trunk/src/library/tools/R/utils.R
~ /trunk/src/library/tools/src/gramLatex.c
~ /trunk/src/library/tools/src/gramLatex.y
~ /trunk/src/library/tools/src/gramRd.c
~ /trunk/src/library/tools/src/gramRd.y
~ /trunk/src/library/tools/src/init.c
~ /trunk/src/library/tools/src/tools.h

Rev 70741 – Separate out code for computing check details changes.

hornik — Thu, 09 Jun 2016 07:34:57 +0000

hornik – 2 file(s) modified
Separate out code for computing check details changes.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/checktools.R

Rev 70491 – New convenience function Rcmd().

hornik — Sat, 16 Apr 2016 11:58:54 +0000

hornik – 3 file(s) modified
New convenience function Rcmd().

+ /trunk/src/library/tools/man/Rcmd.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/utils.R

Rev 70490 – Document and export makevars_user() and makevars_site().

hornik — Sat, 16 Apr 2016 11:34:40 +0000

hornik – 2 file(s) modified
Document and export makevars_user() and makevars_site().

+ /trunk/src/library/tools/man/makevars.Rd
~ /trunk/src/library/tools/NAMESPACE

Rev 70156 – deprecate old package dependency functions as they basically only considered ...

maechler — Sat, 13 Feb 2016 09:27:14 +0000

maechler – 10 file(s) modified
deprecate old package dependency functions as they basically only considered "Depends" but not, e.g., "Imports"

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/man/getDepList.Rd
~ /trunk/src/library/tools/man/installFoundDepends.Rd
~ /trunk/src/library/tools/man/package.dependencies.Rd
~ /trunk/src/library/tools/man/tools-deprecated.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/package.dependencies.R
~ /trunk/src/library/tools/R/pkgDepends.R
~ /trunk/tests/Examples/tools-Ex.Rout.save
~ /trunk/tests/reg-examples3.Rout.save

Rev 69682 – Tweaks.

hornik — Sun, 22 Nov 2015 11:06:12 +0000

hornik – 2 file(s) modified
Tweaks.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/CRANtools.R

Rev 69588 – revert large erronous r69587

maechler — Fri, 30 Oct 2015 20:00:48 +0000

maechler – 60 file(s) modified
revert large erronous r69587

~ /trunk/doc/manual/R-ints.texi
~ /trunk/share/R/examples-header.R
~ /trunk/src/include/Defn.h
~ /trunk/src/include/R_ext/stats_package.h
~ /trunk/src/include/R_ext/stats_stubs.h
~ /trunk/src/library/base/man/expand.grid.Rd
~ /trunk/src/library/base/man/Memory.Rd
~ /trunk/src/library/base/man/source.Rd
~ /trunk/src/library/base/man/trace.Rd
~ /trunk/src/library/compiler/noweb/compiler.nw
~ /trunk/src/library/methods/R/addedFunctions.R
~ /trunk/src/library/methods/R/as.R
~ /trunk/src/library/methods/R/BasicClasses.R
~ /trunk/src/library/methods/R/BasicFunsList.R
~ /trunk/src/library/methods/R/ClassExtensions.R
~ /trunk/src/library/methods/R/Methods.R
~ /trunk/src/library/methods/R/MethodsList.R
~ /trunk/src/library/methods/R/MethodsListClass.R
~ /trunk/src/library/methods/R/methodsTable.R
~ /trunk/src/library/methods/R/oldClass.R
~ /trunk/src/library/methods/R/packageName.R
~ /trunk/src/library/methods/R/RClassUtils.R
~ /trunk/src/library/methods/R/refClass.R
~ /trunk/src/library/methods/R/RMethodUtils.R
~ /trunk/src/library/methods/R/SClasses.R
~ /trunk/src/library/methods/R/show.R
~ /trunk/src/library/methods/R/trace.R
~ /trunk/src/library/stats/man/Beta.Rd
~ /trunk/src/library/stats/man/convolve.Rd
~ /trunk/src/library/stats/man/deriv.Rd
~ /trunk/src/library/stats/man/model.matrix.Rd
~ /trunk/src/library/stats/R/fft.R
~ /trunk/src/library/stats/src/rWishart.c
~ /trunk/src/library/stats/src/sbart.c
~ /trunk/src/library/stats/src/sslvrg.f
~ /trunk/src/library/stats/src/stats.h
~ /trunk/src/library/stats/src/zeroin.c
~ /trunk/src/library/stats/tests/ts-tests.R
~ /trunk/src/library/tools/man/getDepList.Rd
~ /trunk/src/library/tools/man/package.dependencies.Rd
~ /trunk/src/library/tools/man/package_dependencies.Rd
~ /trunk/src/library/tools/man/tools-deprecated.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R
~ /trunk/src/library/tools/R/checktools.R
~ /trunk/src/library/tools/R/CRANtools.R
~ /trunk/src/library/tools/R/index.R
~ /trunk/src/library/tools/R/package.dependencies.R
~ /trunk/src/library/tools/R/pkgDepends.R
~ /trunk/src/library/tools/R/testing.R
~ /trunk/src/library/tools/R/Vignettes.R
~ /trunk/src/library/tools/R/zzz.R
~ /trunk/src/library/utils/man/package.skeleton.Rd
~ /trunk/src/library/utils/R/package.skeleton.R
~ /trunk/src/library/utils/R/packages.R
~ /trunk/src/main/subscript.c
~ /trunk/src/modules/lapack/dlapack.f
~ /trunk/src/nmath/pnbeta.c
~ /trunk/src/nmath/toms708.c
~ /trunk/tests/p-qbeta-strict-tst.R

Rev 69587 – var() and hence sd() now signal an error for factor ...

maechler — Fri, 30 Oct 2015 19:56:23 +0000

maechler – 60 file(s) modified
var() and hence sd() now signal an error for factor arguments

Rev 69564 – Add some tools for (checking) DOIs, and use these for ...

hornik — Sat, 24 Oct 2015 07:22:42 +0000

hornik – 3 file(s) modified
Add some tools for (checking) DOIs, and use these for the CRAN incoming
checks.

~ /trunk/src/library/tools/NAMESPACE
+ /trunk/src/library/tools/R/doitools.R
~ /trunk/src/library/tools/R/QC.R

Rev 69340 – Tweaks.

hornik — Wed, 09 Sep 2015 15:23:46 +0000

hornik – 5 file(s) modified
Tweaks.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R
~ /trunk/src/library/tools/R/CRANtools.R
~ /trunk/src/library/tools/R/QC.R
~ /trunk/src/library/tools/R/utils.R

Rev 69104 – Try formatting CRAN incoming check results in groups.

hornik — Mon, 17 Aug 2015 16:26:14 +0000

hornik – 2 file(s) modified
Try formatting CRAN incoming check results in groups.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/QC.R

Rev 69076 – Add format() and print() methods for 'check_details' class, and have ...

hornik — Fri, 14 Aug 2015 21:02:09 +0000

hornik – 2 file(s) modified
Add format() and print() methods for 'check_details' class, and
have check_packages_in_dir_details() value inherit from this.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/checktools.R

Rev 68637 – "import" from "base pkgs"

maechler — Tue, 07 Jul 2015 09:00:52 +0000

maechler – 2 file(s) modified
"import" from "base pkgs"

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/QC.R

Rev 68520 – More CRAN tools.

hornik — Mon, 15 Jun 2015 14:47:32 +0000

hornik – 2 file(s) modified
More CRAN tools.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/CRANtools.R

Rev 68233 – tools::nonS3methods() and langElts newly exported; experimental isS3method()

maechler — Wed, 22 Apr 2015 19:16:48 +0000

maechler – 10 file(s) modified
tools::nonS3methods() and langElts newly exported; experimental isS3method()

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/man/QC.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/QC.R
~ /trunk/src/library/tools/R/utils.R
~ /trunk/src/library/utils/man/getS3method.Rd
+ /trunk/src/library/utils/man/isS3method.Rd
~ /trunk/src/library/utils/NAMESPACE
~ /trunk/src/library/utils/R/objects.R
~ /trunk/tests/primitives.R

Rev 67764 – incoming check for title case in Title field

ripley — Sat, 07 Feb 2015 12:29:51 +0000

ripley – 5 file(s) modified
incoming check for title case in Title field

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R
~ /trunk/src/library/tools/R/QC.R

Rev 67568 – Add some tools for (checking) URLs, and use these for ...

hornik — Wed, 21 Jan 2015 20:55:42 +0000

hornik – 3 file(s) modified
Add some tools for (checking) URLs, and use these for the CRAN incoming
checks.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/QC.R
+ /trunk/src/library/tools/R/urltools.R

Rev 67218 – Document and export check_packages_in_dir_changes().

hornik — Wed, 24 Dec 2014 13:37:30 +0000

hornik – 3 file(s) modified
Document and export check_packages_in_dir_changes().

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/man/check_packages_in_dir.Rd
~ /trunk/src/library/tools/NAMESPACE

Rev 66599 – Add functionality for inspecting check results/details changes.

hornik — Sun, 14 Sep 2014 10:14:16 +0000

hornik – 2 file(s) modified
Add functionality for inspecting check results/details changes.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/checktools.R

Rev 66351 – Have check_packages_in_dir() return something classed and provide print and summary ...

hornik — Wed, 13 Aug 2014 10:50:09 +0000

hornik – 3 file(s) modified
Have check_packages_in_dir() return something classed and provide print and
summary methods.
Enhance summarize_check_packages_in_dir_results() (results summary table).
Enhance summarize_check_packages_in_dir_depends() (argument 'which').

~ /trunk/src/library/tools/man/check_packages_in_dir.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/checktools.R

Rev 65998 – Allow common Rd macros, either system-wide or in particular packages.

murdoch — Sun, 22 Jun 2014 13:09:21 +0000

murdoch – 16 file(s) modified
Allow common Rd macros, either system-wide or in particular packages.

~ /trunk/doc/Makefile.in
~ /trunk/doc/Makefile.win
~ /trunk/doc/manual/R-exts.texi
~ /trunk/share/Makefile.in
~ /trunk/src/library/tools/man/parse_Rd.Rd
~ /trunk/src/library/tools/man/RdTextFilter.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/admin.R
~ /trunk/src/library/tools/R/news.R
~ /trunk/src/library/tools/R/parseRd.R
~ /trunk/src/library/tools/R/Rd.R
~ /trunk/src/library/tools/R/RdConv2.R
~ /trunk/src/library/tools/R/Rdtools.R
~ /trunk/src/library/tools/src/gramRd.c
~ /trunk/src/library/tools/src/gramRd.y
~ /trunk/src/library/tools/src/init.c

Rev 65047 – Separate format/print from computation of CRAN status summaries.

hornik — Thu, 20 Feb 2014 16:03:27 +0000

hornik – 2 file(s) modified
Separate format/print from computation of CRAN status summaries.

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R

Rev 63718 – tidy up

ripley — Mon, 26 Aug 2013 07:42:32 +0000

ripley – 1 file(s) modified
tidy up

~ /trunk/src/library/tools/NAMESPACE

Rev 63623 – enhance and export tools::find_gs_cmd()

ripley — Mon, 19 Aug 2013 18:40:33 +0000

ripley – 9 file(s) modified
enhance and export tools::find_gs_cmd()

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/grDevices/R/unix/dev2bitmap.R
~ /trunk/src/library/grDevices/R/windows/dev2bitmap.R
+ /trunk/src/library/tools/man/find_gs_cmd.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/admin.R
~ /trunk/src/library/tools/R/build.R
~ /trunk/src/library/tools/R/check.R
~ /trunk/tests/Examples/tools-Ex.Rout.save

Rev 63567 – more checks of imports etc

ripley — Wed, 14 Aug 2013 09:10:12 +0000

ripley – 3 file(s) modified
more checks of imports etc

~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/check.R
~ /trunk/src/library/tools/R/QC.R

Rev 63197 – Added assertWarning(), assertError(), changed returned values to be the conditions ...

jmc — Fri, 05 Jul 2013 22:20:00 +0000

jmc – 4 file(s) modified
Added assertWarning(), assertError(), changed returned values to be the
conditions signalled. Fixed problems with deparsing {}'d expressions.

~ /trunk/doc/NEWS.Rd
~ /trunk/src/library/tools/man/assertCondition.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/assertCondition.R

Rev 63076 – Introduce buildVignette() and weave and tangle utilities.

murdoch — Thu, 27 Jun 2013 16:38:33 +0000

murdoch – 11 file(s) modified
Introduce buildVignette() and weave and tangle utilities.

~ /trunk/doc/manual/R-exts.texi
~ /trunk/doc/manual/R-intro.texi
~ /trunk/doc/NEWS.Rd
~ /trunk/src/gnuwin32/front-ends/rcmdfn.c
+ /trunk/src/library/tools/man/buildVignette.Rd
~ /trunk/src/library/tools/NAMESPACE
~ /trunk/src/library/tools/R/Vignettes.R
~ /trunk/src/library/utils/man/Sweave.Rd
~ /trunk/src/library/utils/R/Sweave.R
+ /trunk/src/scripts/tangle (copied from /trunk/src/scripts/Stangle@63075)
+ /trunk/src/scripts/weave (copied from /trunk/src/scripts/Sweave@63075)