The R Project SVN R

/*
 *  Mathlib : A C Library of Special Functions
 *  Copyright (C) 1998 Ross Ihaka
 *  Copyright (C) 2000 The R Development Core Team
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with this program; if not, a copy is available at
 *  http://www.r-project.org/Licenses/
 *
 *  DESCRIPTION
 *
 *    The quantile function of the hypergeometric distribution.
 */

#include "nmath.h"
#include "dpq.h"

double qhyper(double p, double NR, double NB, double n,
          int lower_tail, int log_p)
{
/* This is basically the same code as  ./phyper.c  *used* to be --> FIXME! */
    double N, xstart, xend, xr, xb, sum, term;
    int small_N;
#ifdef IEEE_754
    if (ISNAN(p) || ISNAN(NR) || ISNAN(NB) || ISNAN(n))
    return p + NR + NB + n;
#endif
    if(!R_FINITE(p) || !R_FINITE(NR) || !R_FINITE(NB) || !R_FINITE(n))
    ML_ERR_return_NAN;

    NR = floor(NR + 0.5);
    NB = floor(NB + 0.5);
    N = NR + NB;
    n = floor(n + 0.5);
    if (NR < 0 || NB < 0 || n < 0 || n > N)
    ML_ERR_return_NAN;

    /* Goal:  Find  xr (= #{red balls in sample}) such that
     *   phyper(xr,  NR,NB, n) >= p > phyper(xr - 1,  NR,NB, n)
     */

    xstart = fmax2(0, n - NB);
    xend = fmin2(n, NR);

    R_Q_P01_boundaries(p, xstart, xend);

    xr = xstart;
    xb = n - xr;/* always ( = #{black balls in sample} ) */

    small_N = (N < 1000); /* won't have underflow in product below */
    /* if N is small,  term := product.ratio( bin.coef );
       otherwise work with its logarithm to protect against underflow */
    term = lfastchoose(NR, xr) + lfastchoose(NB, xb) - lfastchoose(N, n);
    if(small_N) term = exp(term);
    NR -= xr;
    NB -= xb;

    if(!lower_tail || log_p) {
    p = R_DT_qIv(p);
    }
    p *= 1 - 1000*DBL_EPSILON; /* was 64, but failed on FreeBSD sometimes */
    sum = small_N ? term : exp(term);

    while(sum < p && xr < xend) {
    xr++;
    NB++;
    if (small_N) term *= (NR / xr) * (xb / NB);
    else term += log((NR / xr) * (xb / NB));
    sum += small_N ? term : exp(term);
    xb--;
    NR--;
    }
    return xr;
}