| Line 2... |
Line 2... |
| 2 |
@c %**start of header
|
2 |
@c %**start of header
|
| 3 |
@setfilename R-FAQ.info
|
3 |
@setfilename R-FAQ.info
|
| 4 |
@settitle R FAQ
|
4 |
@settitle R FAQ
|
| 5 |
@setchapternewpage on
|
5 |
@setchapternewpage on
|
| 6 |
@set FAQ-YEAR 2004
|
6 |
@set FAQ-YEAR 2004
|
| 7 |
@set FAQ-VERSION 1.8-40, @value{FAQ-YEAR}-02-13
|
7 |
@set FAQ-VERSION 1.8-42, @value{FAQ-YEAR}-02-19
|
| 8 |
@set REL-VERSION 1.8.1
|
8 |
@set REL-VERSION 1.8.1
|
| 9 |
@set FAQ-ISBN 3-900051-01-1
|
9 |
@set FAQ-ISBN 3-900051-01-1
|
| 10 |
@documentlanguage en
|
10 |
@documentlanguage en
|
| 11 |
@documentencoding ISO-8859-1
|
11 |
@documentencoding ISO-8859-1
|
| 12 |
@c %**end of header
|
12 |
@c %**end of header
|
| Line 1461... |
Line 1461... |
| 1461 |
through the CGI interface to a web server. It is easily installed using
|
1461 |
through the CGI interface to a web server. It is easily installed using
|
| 1462 |
Apache under Linux and in principle should run on any platform that
|
1462 |
Apache under Linux and in principle should run on any platform that
|
| 1463 |
supports R and a web server provided that the installer has the
|
1463 |
supports R and a web server provided that the installer has the
|
| 1464 |
necessary security permissions.
|
1464 |
necessary security permissions.
|
| 1465 |
|
1465 |
|
| 1466 |
@strong{Rcgi} is a CGI WWW interface to R by
|
1466 |
@strong{Rcgi} is a CGI WWW interface to R by @email{mjr@@dsl.pipex.com,
|
| 1467 |
@email{mjr@@stats.mth.uea.ac.uk, Mark J. Ray}. It had the ability to
|
- |
|
| 1468 |
use ``embedded code'': you could mix user input and code, allowing the
|
1467 |
MJ Ray}. It had the ability to use ``embedded code'': you could mix
|
| 1469 |
@HTML{} author to do anything from load in data sets to enter most of
|
1468 |
user input and code, allowing the @HTML{} author to do anything from
|
| 1470 |
the commands for users without writing CGI scripts. Graphical output
|
1469 |
load in data sets to enter most of the commands for users without
|
| 1471 |
was possible in PostScript or GIF formats and the executed code was
|
1470 |
writing CGI scripts. Graphical output was possible in PostScript or GIF
|
| 1472 |
presented to the user for revision. However, it is not clear if the
|
1471 |
formats and the executed code was presented to the user for revision.
|
| 1473 |
project is still active and recent attempts to contact the author or
|
1472 |
However, it is not clear if the project is still active.
|
| 1474 |
find the package have failed.
|
- |
|
| 1475 |
@c URL no longer seems to work ...
|
1473 |
@c URL no longer seems to work ...
|
| 1476 |
@c See @uref{http://stats.mth.uea.ac.uk/Rcgi/} for more information.
|
1474 |
@c See @uref{http://stats.mth.uea.ac.uk/Rcgi/} for more information.
|
| 1477 |
Currently, a modified version of @strong{Rcgi} by
|
1475 |
Currently, a modified version of @strong{Rcgi} by
|
| 1478 |
@email{mai@@ms.uky.edu, Mai Zhou} (actually, two versions: one with
|
1476 |
@email{mai@@ms.uky.edu, Mai Zhou} (actually, two versions: one with
|
| 1479 |
(bitmap) graphics and one without) as well as the original code are
|
1477 |
(bitmap) graphics and one without) as well as the original code are
|
| Line 1572... |
Line 1570... |
| 1572 |
Resonance Imaging (fMRI) datasets stored in the ANALYZE format.
|
1570 |
Resonance Imaging (fMRI) datasets stored in the ANALYZE format.
|
| 1573 |
@item Bhat
|
1571 |
@item Bhat
|
| 1574 |
Functions for general likelihood exploration (MLE, MCMC, CIs).
|
1572 |
Functions for general likelihood exploration (MLE, MCMC, CIs).
|
| 1575 |
@item BradleyTerry
|
1573 |
@item BradleyTerry
|
| 1576 |
Specify and fit the Bradley-Terry model and structured versions.
|
1574 |
Specify and fit the Bradley-Terry model and structured versions.
|
| - |
|
1575 |
@item BsMD
|
| - |
|
1576 |
Bayes screening and model discrimination follow-up designs.
|
| 1577 |
@item CDNmoney
|
1577 |
@item CDNmoney
|
| 1578 |
Components of Canadian monetary aggregates.
|
1578 |
Components of Canadian monetary aggregates.
|
| 1579 |
@item CGIwithR
|
1579 |
@item CGIwithR
|
| 1580 |
Facilities for the use of R to write CGI scripts.
|
1580 |
Facilities for the use of R to write CGI scripts.
|
| 1581 |
@item CircStats
|
1581 |
@item CircStats
|
| Line 2040... |
Line 2040... |
| 2040 |
@item haplo.score
|
2040 |
@item haplo.score
|
| 2041 |
Score tests for association of traits with haplotypes when linkage phase
|
2041 |
Score tests for association of traits with haplotypes when linkage phase
|
| 2042 |
is ambiguous.
|
2042 |
is ambiguous.
|
| 2043 |
@item hdf5
|
2043 |
@item hdf5
|
| 2044 |
Interface to the @acronym{NCSA} HDF5 library.
|
2044 |
Interface to the @acronym{NCSA} HDF5 library.
|
| - |
|
2045 |
@item hett
|
| - |
|
2046 |
Functions for the fitting and summarizing of heteroscedastic
|
| - |
|
2047 |
t-regression.
|
| 2045 |
@item hier.part
|
2048 |
@item hier.part
|
| 2046 |
Hierarchical Partitioning: variance partition of a multivariate data
|
2049 |
Hierarchical Partitioning: variance partition of a multivariate data
|
| 2047 |
set.
|
2050 |
set.
|
| 2048 |
@item homals
|
2051 |
@item homals
|
| 2049 |
Homogeneity Analysis (HOMALS) package with optional Tcl/Tk interface.
|
2052 |
Homogeneity Analysis (HOMALS) package with optional Tcl/Tk interface.
|
| Line 2068... |
Line 2071... |
| 2068 |
to Statistical Modeling of Extreme Values;' by S. Coles, 2001, Springer.
|
2071 |
to Statistical Modeling of Extreme Values;' by S. Coles, 2001, Springer.
|
| 2069 |
The functions may be divided into the following groups; maxima/minima,
|
2072 |
The functions may be divided into the following groups; maxima/minima,
|
| 2070 |
order statistics, peaks over thresholds and point processes.
|
2073 |
order statistics, peaks over thresholds and point processes.
|
| 2071 |
@item its
|
2074 |
@item its
|
| 2072 |
An S4 class for handling irregular time series.
|
2075 |
An S4 class for handling irregular time series.
|
| - |
|
2076 |
@item kernlab
|
| - |
|
2077 |
Kernel-based machine learning methods including support vector machines.
|
| - |
|
2078 |
@c <FIXME 1.9.0>
|
| - |
|
2079 |
(Currently in @file{1.9.0/Other}.)
|
| - |
|
2080 |
@c </FIXME>
|
| 2073 |
@item knnTree
|
2081 |
@item knnTree
|
| 2074 |
Construct or predict with @math{k}-nearest-neighbor classifiers, using
|
2082 |
Construct or predict with @math{k}-nearest-neighbor classifiers, using
|
| 2075 |
cross-validation to select @math{k}, choose variables (by forward or
|
2083 |
cross-validation to select @math{k}, choose variables (by forward or
|
| 2076 |
backwards selection), and choose scaling (from among no scaling, scaling
|
2084 |
backwards selection), and choose scaling (from among no scaling, scaling
|
| 2077 |
each column by its SD, or scaling each column by its MAD). The finished
|
2085 |
each column by its SD, or scaling each column by its MAD). The finished
|
| Line 2152... |
Line 2160... |
| 2152 |
@item maxstat
|
2160 |
@item maxstat
|
| 2153 |
Maximally selected rank and Gauss statistics with several p-value
|
2161 |
Maximally selected rank and Gauss statistics with several p-value
|
| 2154 |
approximations.
|
2162 |
approximations.
|
| 2155 |
@item mclust
|
2163 |
@item mclust
|
| 2156 |
Model-based cluster analysis: the 2002 version of MCLUST.
|
2164 |
Model-based cluster analysis: the 2002 version of MCLUST.
|
| - |
|
2165 |
@c <COMMENT>
|
| - |
|
2166 |
@c Moved to Archive on 2004-02-19 as requested by the maintainer.
|
| 2157 |
@item mclust1998
|
2167 |
@c @item mclust1998
|
| 2158 |
Model-based cluster analysis: the 1998 version of MCLUST.
|
2168 |
@c Model-based cluster analysis: the 1998 version of MCLUST.
|
| - |
|
2169 |
@c </COMMENT>
|
| 2159 |
@item mda
|
2170 |
@item mda
|
| 2160 |
Code for mixture discriminant analysis (MDA), flexible discriminant
|
2171 |
Code for mixture discriminant analysis (MDA), flexible discriminant
|
| 2161 |
analysis (FDA), penalized discriminant analysis (PDA), multivariate
|
2172 |
analysis (FDA), penalized discriminant analysis (PDA), multivariate
|
| 2162 |
additive regression splines (MARS), adaptive back-fitting splines
|
2173 |
additive regression splines (MARS), adaptive back-fitting splines
|
| 2163 |
(BRUTO), and penalized regression.
|
2174 |
(BRUTO), and penalized regression.
|
| Line 2197... |
Line 2208... |
| 2197 |
@item multcomp
|
2208 |
@item multcomp
|
| 2198 |
Multiple comparison procedures for the one-way layout.
|
2209 |
Multiple comparison procedures for the one-way layout.
|
| 2199 |
@item multidim
|
2210 |
@item multidim
|
| 2200 |
Multidimensional descriptive statistics: factorial methods and
|
2211 |
Multidimensional descriptive statistics: factorial methods and
|
| 2201 |
classification.
|
2212 |
classification.
|
| - |
|
2213 |
@item multinomRob
|
| - |
|
2214 |
Overdispersed multinomial regression using robust (LQD and tanh)
|
| - |
|
2215 |
estimation.
|
| 2202 |
@item multiv
|
2216 |
@item multiv
|
| 2203 |
Functions for hierarchical clustering, partitioning, bond energy
|
2217 |
Functions for hierarchical clustering, partitioning, bond energy
|
| 2204 |
algorithm, Sammon mapping, PCA and correspondence analysis.
|
2218 |
algorithm, Sammon mapping, PCA and correspondence analysis.
|
| 2205 |
@item mvbutils
|
2219 |
@item mvbutils
|
| 2206 |
Utilities by Mark V. Bravington for project organization, editing and
|
2220 |
Utilities by Mark V. Bravington for project organization, editing and
|
| Line 2341... |
Line 2355... |
| 2341 |
@item randomForest
|
2355 |
@item randomForest
|
| 2342 |
Breiman's random forest classifier.
|
2356 |
Breiman's random forest classifier.
|
| 2343 |
@c @item ratetables
|
2357 |
@c @item ratetables
|
| 2344 |
@c US national and state mortality data (requires @strong{survival4} and
|
2358 |
@c US national and state mortality data (requires @strong{survival4} and
|
| 2345 |
@c @strong{date}), for use with @strong{survival4}.
|
2359 |
@c @strong{date}), for use with @strong{survival4}.
|
| - |
|
2360 |
@item ref
|
| - |
|
2361 |
Functions for creating references, reading from and writing ro
|
| - |
|
2362 |
references and a memory efficient refdata type that transparently
|
| - |
|
2363 |
encapsulates matrices and data frames.
|
| 2346 |
@item relimp
|
2364 |
@item relimp
|
| 2347 |
Functions to facilitate inference on the relative importance of
|
2365 |
Functions to facilitate inference on the relative importance of
|
| 2348 |
predictors in a linear or generalized linear model.
|
2366 |
predictors in a linear or generalized linear model.
|
| 2349 |
@item rgdal
|
2367 |
@item rgdal
|
| 2350 |
Provides bindings to Frank Warmerdam's Geospatial Data Abstraction
|
2368 |
Provides bindings to Frank Warmerdam's Geospatial Data Abstraction
|
The R Project SVN
R