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# Subroutines for converting R documentation into text, HTML, LaTeX
# and R (Examples) format

# Copyright (C) 1997-2000 R Development Core Team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
#
# A copy of the GNU General Public License is available via WWW at
# http://www.gnu.org/copyleft/gpl.html.  You can also obtain it by
# writing to the Free Software Foundation, Inc., 59 Temple Place,
# Suite 330, Boston, MA  02111-1307  USA.

# Send any bug reports to R-bugs@lists.r-project.org


require "$R_HOME/etc/html-layout.pl";
use Text::Tabs;

# names of unique text blocks, these may NOT appear MORE THAN ONCE!
@blocknames = ("name", "title", "usage", "arguments", "format",
           "description", "details", "value", "references", "source",
           "seealso", "examples", "author", "note", "synopsis");

# These may appear multiply but are of simple structure:
@multiblocknames = ("alias", "keyword");


# These should NOT contain letters from $LATEX_SPEC
$NB = "normal-bracket";
$BN = "bracket-normal";
$EOB = "escaped-opening-bracket";
$ECB = "escaped-closing-bracket";
$ID = "$NB\\d+$BN";

$ECODE = "this-is-escaped-code";

$LATEX_SPEC = '\$\^&~_#';#-- these **should** be escaped in  text2latex(.)
$LATEX_SPECIAL = $LATEX_SPEC . '%\{\}\\\\';
$LATEX_DO_MATH = '-+\*/\|<>=!' . $LATEX_SPECIAL;
$MD = ',,,Math,del;;;'; #-- should NOT contain any characters from $LATEX_..
$Math_del = "\$"; #UNquoted '$'
$MAXLOOPS = 1000;


sub Rdconv { # Rdconv(foobar.Rd, type, debug, filename, pkgname)

    $Rdname = $_[0];
    open rdfile, "<$Rdname" || die "Rdconv(): Couldn't open '$Rdfile':$!\n";

    $type = $_[1];
    $debug = $_[2];
    $pkgname = $_[4];

    if($type !~ /,/) {
    ## Trivial (R 0.62 case): Only 1 $type at a time ==> one filename is ok.
    ## filename = 0   <==>  STDOUT
    ## filename = -1  <==>  do NOT open and close files!
    $htmlfile= $txtfile= $Sdfile= $latexfile= 
        $Exfile = $chmfile = $_[3];
    } else { # have "," in $type: Multiple types with multiple output files
    $dirname = $_[3]; # The super-directory , such as  <Rlib>/library/<pkg>
    die "Rdconv(): '$dirname' is NOT a valid directory:$!\n"
      unless -d $dirname;
    $htmlfile = $dirname ."/html/" .$Rdname.".html" if $type =~ /html/i;
    $txtfile= $dirname ."/help/" . $Rdname          if $type =~ /txt/i;
    die "Rdconv(): type 'Sd' must not be used with other types (',')\n"
      if $type =~ /Sd/i;
    $latexfile= $dirname ."/latex/". $Rdname.".tex" if $type =~ /tex/i;
    $Exfile   = $dirname ."/R-ex/" . $Rdname.".R"   if $type =~ /example/i;
    }
    

    $max_bracket = 0;
    $max_section = 0;

    undef $complete_text;
    undef %blocks;
    undef @section_body;
    undef @section_title;

    $skipping = 0;
    #-- remove comments (everything after a %)
    while(<rdfile>){
    $_ = expand $_;
    if (/^#ifdef\s+([A-Za-z0-9]+)/o) {
        if ($1 ne $OSdir) { $skipping = 1; }
        next;
    }
    if (/^#ifndef\s+([A-Za-z0-9]+)/o) {
        if ($1 eq $OSdir) { $skipping = 1; }
        next;
    }
    if (/^#endif/o) {
        $skipping = 0;
        next;
    }
    next if $skipping > 0;
    next if /^\s*%/o;#- completely drop full comment lines
    my $loopcount = 0;
    while(checkloop($loopcount++, $_, "\\%") &&
          s/^\\%|([^\\])\\%/$1escaped_percent_sign/go){};
    s/^([^%]*)%.*$/$1/o;
    s/escaped_percent_sign/\\%/go;
    $complete_text .= $_;
    }
    printf STDERR "-- read file '%s';\n",$_[0] if $debug;

    mark_brackets();
    ##HARD Debug:print "$complete_text\n"; exit;
    escape_codes();
    if($debug) {
    print STDERR "\n--------------\nescape codes: '\@ecodes' =\n";

    while(my($id,$code) = each %ecodes) {
        print STDERR "\t\$ec{$id}='$code'\n";
    }
    }

    if($type) {
    #-- These may be used in all cases :
    @aliases = get_multi($complete_text,"alias");
    @keywords= get_multi($complete_text,"keyword");

    get_blocks($complete_text);
 
    if($type =~ /html/i || $type =~ /txt/i ||
       $type =~ /Sd/    || $type =~ /tex/i || $type =~ /chm/i ) {

        get_sections($complete_text);

    } elsif($type =~ /example/i ) {
        ;
    } else {
        warn "\n** Rdconv --type '..' : no valid type specified\n";
    }

    rdoc2html($htmlfile)    if $type =~ /html/i;
    rdoc2txt($txtfile)  if $type =~ /txt/i;
    rdoc2Sd($Sdfile)    if $type =~ /Sd/i;
    rdoc2latex($latexfile)  if $type =~ /tex/i;
    rdoc2ex($Exfile)    if $type =~ /example/i;
    rdoc2chm($chmfile)  if $type =~ /chm/i;

    } else {
    warn "\n*** Rdconv(): no type specified\n";
    }
}


sub checkloop {
    my $loopcount = $_[0];
    my $text = $_[1];
    my $what = $_[2];

    if($loopcount > $MAXLOOPS){

    while($text =~ /$ECODE($ID)/){
        my $id = $1;
        my $ec = $ecodes{$id};
        $text =~ s/$ECODE$id/$ec/;
    }
    $text = unmark_brackets($text);

    die("\n\n******* Syntax error: $what in\n/-----\n$text\\-----\n");
    }

    1;
}



# Mark each matching opening and closing bracket with a unique id.
# Idea and original code from latex2html
sub mark_brackets {

    $complete_text =~ s/^\\{|([^\\])\\{/$1$EOB/gso;
    $complete_text =~ s/^\\}|([^\\])\\}/$1$ECB/gso;

    print STDERR "\n-- mark_brackets:" if $debug;
    my $loopcount = 0;
    while(checkloop($loopcount++, $complete_text,
            "mismatched or missing brackets") &&
      $complete_text =~ /{([^{}]*)}/s){
    my $id = $NB . ++$max_bracket . $BN;
    $complete_text =~ s/{([^{}]*)}/$id$1$id/s;
    print STDERR "." if $debug;
    }
}


sub unmark_brackets {
    my $text = $_[0];

    my $loopcount = 0;
    while(($loopcount++ < $MAXLOOPS) && $text =~ /($ID)(.*)($ID)/s){
    $id = $1;
    if($text =~ s/$id(.*)$id/\{$1\}/s){
        $text =~ s/$id(.*)$id/\{$1\}/so;
    }
    else{
        # return $text;
        $text =~ s/$id/\{/so;
    }
    }
    $text =~ s/$EOB/\{/gso;
    $text =~ s/$ECB/\}/gso;
    $text;
}

sub escape_codes {
    print STDERR "\n-- escape_codes:" if $debug;
    my $loopcount = 0;
    while(checkloop($loopcount++, $complete_text,
            "while replacing all \\code{...}") &&
      $complete_text =~ /\\code/){
    my ($id, $arg)  = get_arguments("code", $complete_text, 1);
    $complete_text =~ s/\\code$id(.*)$id/$ECODE$id/s;
    $ecodes{$id} = $1;
    print STDERR "," if $debug;
    }
}


# Write documentation blocks such as title, usage, etc. into the
# global hash array %blocks
sub get_blocks {

    my $text = $_[0];

    my $id="";
    print STDERR "--- Blocks\n" if $debug;
    foreach $block (@blocknames){
    if($text =~ /\\($block)($ID)/){
        ($id, $blocks{$block}) = get_arguments($block, $text, 1);
        print STDERR "found: $block\n" if $debug;
        if((($block =~ /usage/) || ($block =~ /examples/))) {
        ## multiple empty lines to one
        $blocks{$block} =~ s/^[ \t]+$//;
        $blocks{$block} =~ s/\n\n\n/\n\n/gom;
        } else {
        ## remove leading and trailing whitespace
        $blocks{$block} =~ s/^\s+//so;
        $blocks{$block} =~ s/\s+$//so;
        $blocks{$block} =~ s/\n[ \t]+/\n/go;
        }

        # no formatting commands allowed in the title string
        if($block =~ /title/) {
        if($blocks{"title"} =~ /$ID/){
            die("\nERROR: Environment ".
            "(text enclosed in \{\}) found in \\title\{...\}.\n".
            "The title must be plain text!\n\n");
        }
        }

    }
    }
    print STDERR "---\n" if $debug;
}

# Get  ALL  multiblock things -- their simple arg. is put in array:
#
sub get_multi {

    my ($text, $name) = @_; # name: "alias" or "keyword"
    my @res, $k=0;
    print STDERR "--- Multi: $name\n" if $debug;
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\name")
      && $text =~ /\\$name($ID)/) {
    my $id = $1;
    my ($endid, $arg) =
        get_arguments($name, $text, 1);
    print STDERR "found:" if $debug && $k==0;
    print STDERR " $k:$arg" if $debug;
    $arg =~ s/^\s*(\S)/$1/;
    $arg =~ s/\n[ \t]*(\S)/\n$1/g;
    $arg =~ s/\s*$//;
    $res[$k++] = $arg;
    $text =~ s/\\$name//s;
    }
    print STDERR "\n---\n" if $debug;
    @res;
}

# Write the user defined sections into the
# global hashs @section_body and @section_title
sub get_sections {

    my $text = $_[0];

    print STDERR "--- Sections\n" if $debug;
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\section") &&
      $text =~ /\\section($ID)/){
    my $id = $1;
    my ($endid, $section, $body)
        = get_arguments("section", $text, 2);
    print STDERR "found: $section\n" if $debug;

    ## remove leading and trailing whitespace
    $section =~ s/^\s+//so;
    $section =~ s/\s+$//so;
    $body =~ s/^\s+//so;
    $body =~ s/\s+$//so;
    $body =~ s/\n[ \t]+/\n/go;
    $section_body[$max_section] = $body;
    $section_title[$max_section++] = $section;
    $text =~ s/\\section//s;
    }
    print STDERR "---\n" if $debug;
}

# Get the arguments of a command.
sub get_arguments {

    my ($command, $text, $nargs) = @_;
    # Arguments of get_arguments:
    #  1, command: next occurence of `command' is searched
    #  2, text   : `text' is the text containing the command
    #  3, nargs  : the optional number of arguments to be extracted; default 1
    my @retval;
    # Returns a list with the id of the last closing bracket and
    # the arguments.

    if($text =~ /\\($command)(\[[^\]]+\])?($ID)/){
    $id = $3;
    $text =~ /$id(.*)$id/s;
    $retval[1] = $1;
    my $k=2;
    while(($k<=$nargs) && ($text =~ /$id($ID)/)){
        $id = $1;
        $text =~ /$id\s*(.*)$id/s;
        $retval[$k++] = $1;
    }
    }
    $retval[0] = $id;
    @retval;
}

# Get the argument(s) of a link.
sub get_link {
    my ($text) = @_;
    my @retval, $id;
    if($text =~ /\\link\[([^\]]+)\]($ID)/){
    $retval[2] = $1;
    $id = $2;
    $text =~ /$id(.*)$id/s;
    $retval[1] = $1;
    } elsif($text =~ /\\link($ID)/){
    $id = $1;
    $text =~ /$id(.*)$id/s;
    $retval[1] = $1;
    }
    $retval[0] = $id;
    @retval;
}

# Print a short vector of strings  (utility).
sub print_vec {
    my($F, $nam, $do_nam, $sep, $end) = @_;
    my($i)=0;
    $sep = ', '  unless $sep;
    $end = ".\n" unless $end;
    print $F "\@$nam = " if $do_nam;
    foreach (@$nam) { print $F ($i>0 ? $sep : '') . "'$_'"; $i++ }
    print $F $end;
}



# Print the hash %blocks ... for debugging only (I just insert this
# function manually at places where I need it :-)
sub print_blocks {

    while(($block,$text) = each %blocks) {

    print STDERR "\n\n********** $block **********\n\n";
    print STDERR $text;
    }
    print STDERR "\n";
}



# Drop the command and leave it's inside argument, i.e.,
#  replace "\abc{longtext}"
#  by       "longtext"
sub undefine_command {

    my ($text, $cmd) = @_;

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\$cmd") &&  $text =~ /\\$cmd/){
    my ($id, $arg)  = get_arguments($cmd, $text, 1);
    $text =~ s/\\$cmd(\[.*\])?$id(.*)$id/$2/s;
    }
    $text;
}


# Drop the command  AND  it's inside argument, i.e.,
#  replace "_text1_\abc{longtext}-text2-" by "_text1_-text2-"
sub drop_full_command {

    my ($text, $cmd) = @_;
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\$cmd") &&  $text =~ /\\$cmd/){
    my ($id, $arg)  = get_arguments($cmd, $text, 1);
    $text =~ s/\\$cmd$id.*$id//s;
    }
    $text;
}


# Replace the command and and its closing bracket
# by  $before  and  $after, respectively, e.g.,
#  replace "\abc{longtext}"
#  by       "<Bef>longtext<Aft>"
sub replace_command {

    my ($text, $cmd, $before, $after) = @_;

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\$cmd") &&
      $text =~ /\\$cmd/){
    my ($id, $arg)  = get_arguments($cmd, $text, 1);
    $text =~ s/\\$cmd$id(.*)$id/$before$1$after/s;
    }
    $text;
}

# Replace the command and and its closing bracket
# by  $before  and  $after, respectively, AND PREPEND a comment
# to eacho LINE e.g.,
#  replace "\abc{line1\nline2\n....}"
#  by       "<Bef>\n##line1\n##line2\n##....<Aft>"
sub replace_prepend_command {

    my ($text, $cmd, $before, $after, $prepend) = @_;

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\$cmd") &&
      $text =~ /\\$cmd/){
    my ($id, $arg)  = get_arguments($cmd, $text, 1);
    $text =~ /\\$cmd$id(.*)$id/s;
    $arg = $1;
    $arg =~ s/^/$prepend/gmo;# prepend at all line beginnings
    $arg =~ s/^$prepend//;   # but NOT the very beginning..
    $text =~ s/\\$cmd$id.*$id/$before$arg$after/s;
    }
    $text;
}

sub striptitle { # text
    my $text = $_[0];
    $text =~ s/\\//go;
    $text =~ s/---/-/go;
    $text =~ s/--/-/go;
    return $text;
}

#==************************ HTML ********************************


sub rdoc2html { # (filename) ; 0 for STDOUT

    if($_[0]!= -1) {
      if($_[0]) { open htmlout, "> $_[0]"; } else { open htmlout, "| cat"; }
    }
    $using_chm = 0;
    print htmlout html_functionhead(striptitle($blocks{"title"}), $pkgname,
                    $blocks{"name"});

    html_print_block("description", "Description");
    html_print_codeblock("usage", "Usage");
    html_print_argblock("arguments", "Arguments");
    html_print_block("format", "Format");
    html_print_block("details", "Details");
    html_print_argblock("value", "Value");

    html_print_sections();

    html_print_block("note", "Note");
    html_print_block("author", "Author(s)");
    html_print_block("source", "Source");
    html_print_block("references", "References");
    html_print_block("seealso", "See Also");
    html_print_codeblock("examples", "Examples");

    print htmlout html_functionfoot();
    close htmlout;
}


# Convert a Rdoc text string to HTML, i.e., convert \lang to <tt> etc.
sub text2html {

    my $text = $_[0];
    my $angles = $_[1]; # should < and > be converted?

    if($angles) {
        $text =~ s/&([^#])/&amp;\1/go; # might have explicit &# in source
    $text =~ s/>/&gt;/go;
    $text =~ s/</&lt;/go;
    $text =~ s/\\le/&lt;=/go;
    $text =~ s/\\ge/&gt;=/go;
    $text =~ s/\\%/%/go;

    $text =~ s/\n\s*\n/\n<P>\n/sgo;
    $text =~ s/\\dots/.../go;
    $text =~ s/\\ldots/.../go;

    $text =~ s/\\Gamma/&Gamma;/go;
    $text =~ s/\\alpha/&alpha;/go;
    $text =~ s/\\Alpha/&Alpha;/go;
    $text =~ s/\\pi/&pi;/go;
    $text =~ s/\\mu/&mu;/go;
    $text =~ s/\\sigma/&sigma;/go;
    $text =~ s/\\Sigma/&Sigma;/go;
    $text =~ s/\\lambda/&lambda;/go;
    $text =~ s/\\beta/&beta;/go;
    $text =~ s/\\epsilon/&epsilon;/go;
    $text =~ s/\\left\(/\(/go;
    $text =~ s/\\right\)/\)/go;
    $text =~ s/\\R/<FONT FACE=\"Courier New,Courier\" COLOR=\"\#666666\"><b>R<\/b><\/FONT>/go;
    $text =~ s/---/&#151;/go; # HTML 4.01 has &mdash; and &#8212;
    $text =~ s/--/&#150;/go; # HTML 4.01 has &ndash; and &#8211;
    $text =~ s/$EOB/\{/go;
    $text =~ s/$ECB/\}/go;
    }

    $text = replace_command($text, "emph", "<EM>", "</EM>");
    $text = replace_command($text, "bold", "<B>", "</B>");
    $text = replace_command($text, "file", "`<tt>", "</tt>'");

    $text = html_tables($text);
    $text =~ s/\\cr/<BR>/sgo;

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\link")
      &&  $text =~ /\\link/){
    my ($id, $arg, $org) = get_link($text);
    ## fix conversions in key of htmlindex:
    my $argkey = $arg;
    $argkey =~ s/&lt;/</go;
    $argkey =~ s/&gt;/>/go;
    $htmlfile = $htmlindex{$argkey};
    if($htmlfile){
        if($using_chm) {
        if ($htmlfile =~ s+^$pkg/html/++) {
            # in the same chm file
        } else {
            $tmp = $htmlfile;
            ($base, $topic) = ($tmp =~ m+(.*)/(.*)+);
            $base =~ s+/html$++;
            $htmlfile = "ms-its:../../$base/chtml/$base.chm::/$topic";
#           print "$htmlfile\n";
        }
        $text =~
            s/\\link(\[.*\])?$id.*$id/<A HREF=\"$htmlfile\">$arg<\/A>/s;
        } else {
        $text =~
            s/\\link(\[.*\])?$id.*$id/<A HREF=\"..\/..\/$htmlfile\">$arg<\/A>/s;
        }
    }
    else {
        $misslink = $misslink . " " . $argkey unless $opt ne "";
        if($using_chm){
        if($opt ne "") {
            my ($pkg, $topic) = split(/:/, $opt);
            $topic = $arg if $topic eq "";
            $opt =~ s/:.*$//o;
            $htmlfile = "ms-its:../../$opt/chtml/$opt.chm::/$topic.html";
            $text =~ s/\\link(\[.*\])?$id.*$id/<A HREF=\"$htmlfile\">$arg<\/A>/s;
        } else {
            $text =~ s/\\link(\[.*\])?$id.*$id/$arg/s;
        } 
        }
        else{
        if($opt ne "") {
            my ($pkg, $topic) = split(/:/, $opt);
            $topic = $arg if $topic eq "";
            $htmlfile = $pkg."/html/".$topic.".html";
            $text =~ s/\\link(\[.*\])?$id.*$id/<A HREF=\"..\/..\/$htmlfile\">$arg<\/A>/s;
        } else {
            $text =~ s/\\link(\[.*\])?$id.*$id/<A HREF=\"..\/..\/..\/doc\/html\/search\/SearchObject.html?$argkey\">$arg<\/A>/s;
        }
        }
    }
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\email")
      &&  $text =~ /\\email/){
    my ($id, $arg)  = get_arguments("email", $text, 1);
    $text =~ s/\\email$id.*$id/<A HREF=\"mailto:$arg\">$arg<\/A>/s;
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\url")
      &&  $text =~ /\\url/){
    my ($id, $arg)  = get_arguments("url", $text, 1);
    $text =~ s/\\url.*$id/<A HREF=\"$arg\">$arg<\/A>/s;
    }

    # handle equations:
    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\eqn")
      &&  $text =~ /\\eqn/){
    my ($id, $eqn, $ascii) = get_arguments("eqn", $text, 2);
    $eqn = $ascii if $ascii;
    $text =~ s/\\eqn(.*)$id/<I>$eqn<\/I>/s;
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\deqn")
      &&  $text =~ /\\deqn/){
    my ($id, $eqn, $ascii) = get_arguments("deqn", $text, 2);
    $eqn = $ascii if $ascii;
    $text =~ s/\\deqn(.*)$id/<P align="center"><I>$eqn<\/I><\/P>/s;
    }

    $text = replace_command($text, "itemize", "<UL>", "</UL>");
    $text = replace_command($text, "enumerate", "<OL>", "</OL>");
    $text =~ s/\\item\s+/<li>/go;

    # handle "\describe"
    $text = replace_command($text, "describe", "<DL>", "</DL>");
    while(checkloop($loopcount++, $text, "\\item") && $text =~ /\\itemnormal/s)
    {
    my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
    $descitem = "<DT>" . text2html($arg, 0) . "</DT>";
    $descitem .= "<DD>" . text2html($desc, 0) . "</DD>";
    $text =~ s/\\itemnormal.*$id/$descitem/s;
    }
    $text =~ s/\\([^\\])/$1/go;#-drop single "\" (as in ``\R'')
    $text =~ s/\\\\/\\/go;
    $text = html_unescape_codes($text);
    unmark_brackets($text);
}

sub code2html {

    my $text = $_[0];

    $text =~ s/&/&amp;/go;
    $text =~ s/>/&gt;/go;
    $text =~ s/</&lt;/go;
    $text =~ s/\\%/%/go;
    $text =~ s/\\ldots/.../go;
    $text =~ s/\\dots/.../go;

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\link")
      &&  $text =~ /\\link/){
    my ($id, $arg, $opt) = get_link($text);

    ## fix conversions in key of htmlindex:
    my $argkey = $arg;
    $argkey =~ s/&lt;/</go;
    $argkey =~ s/&gt;/>/go;
    $htmlfile = $htmlindex{$argkey};

    if($htmlfile){
        if($using_chm) {
        if ($htmlfile =~ s+^$pkg/html/++) {
            # in the same chm file
        } else {
            $tmp = $htmlfile;
            ($base, $topic) = ($tmp =~ m+(.*)/(.*)+);
            $base =~ s+/html$++;
            $htmlfile = "ms-its:../../$base/chtml/$base.chm::/$topic";
#           print "$htmlfile\n";
        }
        $text =~
            s/\\link(\[.*\])?$id.*$id/<A HREF=\"$htmlfile\">$arg<\/A>/s;
        } else {
        $text =~
            s/\\link(\[.*\])?$id.*$id/<A HREF=\"..\/..\/$htmlfile\">$arg<\/A>/s;
        }
    }
    else{
        $misslink = $misslink . " " . $argkey unless $opt ne "";
        if($using_chm){
        if($opt ne "") {
            my ($pkg, $topic) = split(/:/, $opt);
            $topic = $arg if $topic eq "";
            $opt =~ s/:.*$//o;
            $htmlfile = "ms-its:../../$opt/chtml/$opt.chm::/$topic.html";
#           print "$htmlfile\n";
                $text =~ s/\\link(\[.*\])?$id.*$id/<A HREF=\"$htmlfile\">$arg<\/A>/s;
        } else {
            $text =~ s/\\link(\[.*\])?$id.*$id/$arg/s;
        } 
        }
        else{
        if($opt ne "") {
            my ($pkg, $topic) = split(/:/, $opt);
            $topic = $arg if $topic eq "";
            $htmlfile = $pkg."/html/".$topic.".html";
            $text =~ s/\\link(\[.*\])?$id.*$id/<A HREF=\"..\/..\/$htmlfile\">$arg<\/A>/s;
        } else {
            $text =~ s/\\link(\[.*\])?$id.*$id/<A HREF=\"..\/..\/..\/doc\/html\/search\/SearchObject.html?$argkey\">$arg<\/A>/s;
        }
        }
    }
    }

    $text = undefine_command($text, "dontrun");
    $text = drop_full_command($text, "testonly");
    $text =~ s/\\\\/\\/go;

    unmark_brackets($text);
}

# Print a standard block
sub html_print_block {

    my ($block,$title) = @_;

    if(defined $blocks{$block}){
    print htmlout html_title3($title);
    print htmlout "<p>\n", text2html($blocks{$block}, 1), "\n";
    }
}

# Print a code block (preformatted)
sub html_print_codeblock {

    my ($block,$title) = @_;

    if(defined $blocks{$block}){
    print htmlout html_title3($title);
    print htmlout "<PRE>";
    print htmlout code2html($blocks{$block});
    print htmlout "</PRE>\n\n";
    }
}


# Print the value or arguments block
sub html_print_argblock {

    my ($block,$title) = @_;

    if(defined $blocks{$block}){
    print htmlout html_title3($title);

    my $text = $blocks{$block};

    if($text =~ /\\item/s){
        $text =~ /^(.*)(\\item.*)*/s;
        my ($begin, $rest) = split(/\\item/, $text, 2);
        if($begin){
        print htmlout text2html($begin, 1);
        $text =~ s/^$begin//s;
        }
        print htmlout "<TABLE>\n";
        my $loopcount = 0;
        while(checkloop($loopcount++, $text, "\\item")
          && $text =~ /\\item/s){
        my ($id, $arg, $desc)  =
            get_arguments("item", $text, 2);
        print htmlout "<TR VALIGN=\"TOP\"><TD><CODE>";
        print htmlout text2html($arg, 1);
        print htmlout "</CODE></TD>\n<TD>\n";
        print htmlout text2html($desc, 1), "</TD></TR>\n";
        $text =~ s/.*$id//s;
        }
        print htmlout "</TABLE>\n";
        print htmlout "<P>\n", text2html($text, 1), "</P>\n";
    }
    else{
        print htmlout "<P>\n", text2html($text, 1), "</P>\n";
    }
    }
}

# Print sections
sub html_print_sections {

    my $section;

    for($section=0; $section<$max_section; $section++){
    print htmlout html_title3($section_title[$section]);
    print htmlout "<P>\n", text2html($section_body[$section], 1), "</P>\n";
    }
}


sub html_unescape_codes {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "escaped code")
      && $text =~ /$ECODE($ID)/){
    my $id = $1;
    my $ec = code2html($ecodes{$id});
    $text =~ s/$ECODE$id/<CODE>$ec<\/CODE>/;
    }
    $text;
}


sub html_tables {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\tabular")
      &&  $text =~ /\\tabular/){

    my ($id, $format, $arg)  =
        get_arguments("tabular", $text, 2);

    $arg =~ s/\n/ /sgo;

    # remove trailing \cr (otherwise we get an empty last line)
    $arg =~ s/\\cr\s*$//go;

    # parse the format of the tabular environment
    my $ncols = length($format);
    my @colformat = ();
    for($k=0; $k<$ncols; $k++){
        my $cf = substr($format, $k, 1);

        if($cf =~ /l/o){
        $colformat[$k] = "left";
        }
        elsif($cf =~ /r/o){
        $colformat[$k] = "right";
        }
        elsif($cf =~ /c/o){
        $colformat[$k] = "center";
        }
        else{
        die("Error: unknown identifier \{$cf\} in" .
            " tabular format \{$format\}\n");
        }
    }

    # now do the real work: split into lines and columns
    my $table = "<TABLE>\n";
    my @rows = split(/\\cr/, $arg);
    for($k=0; $k<=$#rows;$k++){
        $table .= "<TR>\n";
        my @cols = split(/\\tab/, $rows[$k]);
        die("Error:\n  $rows[$k]\\cr\n" .
        "does not fit tabular format \{$format\}\n")
        if ($#cols != $#colformat);
        for($l=0; $l<=$#cols; $l++){
        $table .= "  <TD align=\"$colformat[$l]\">$cols[$l]</TD>";
        }
        $table .= "\n</TR>\n";
    }
    $table .= "</TABLE>\n";
    $text =~ s/\\tabular.*$id/$table/s;
    }

    $text;
}


#==************************** txt ******************************

use Text::Wrap;
use Text::Tabs;

sub rdoc2txt { # (filename); 0 for STDOUT

    if($_[0]!= -1) {
      if($_[0]) { open txtout, "> $_[0]"; } else { open txtout, "| cat"; }
    }

    $Text::Wrap::columns=72;
    $INDENT = 3;  # indent for \itemize and \enumerate first line
    $INDENTD = 0; # indent for \describe list first line
    $INDENTDD = 7; # indent for \describe list bodies

    if ($pkgname) {
    my $pad = 75 - length($blocks{"name"}) - length($pkgname) - 30;
    $pad = int($pad/2);
    print txtout  $blocks{"name"}, " " x $pad, 
    "package:$pkgname", " " x $pad,"R Documentation\n\n";
    }
    print txtout txt_header(striptitle($blocks{"title"})), "\n";
    txt_print_block("description", "Description");
    txt_print_codeblock("usage", "Usage");
    txt_print_argblock("arguments", "Arguments");
    txt_print_block("format", "Format");
    txt_print_block("details", "Details");
    txt_print_argblock("value", "Value");

    txt_print_sections();

    txt_print_block("note", "Note");
    txt_print_block("author", "Author(s)");
    txt_print_block("source", "Source");
    txt_print_block("references", "References");
    txt_print_block("seealso", "See Also");
    txt_print_codeblock("examples", "Examples");

    print txtout "\n";
    close txtout;
}

## Underline section headers
sub txt_header {

    my $header = $_[0];
    $header =~ s/\\//go;
#    '_' . join '_', split //, $header;
    my @letters = split //, $header;
    my $out = "", $a;
    for($l = 0; $l <= $#letters; $l++){
    $a = @letters[$l];
    if($a =~ /[A-Za-z0-9]/) {
        $out .= '_' . $a;
    } else {
        $out .= $a;
    }
    }
    return $out;
}

### Convert a Rdoc text string to txt
###   $_[0]: text to be converted
###   $_[1]: (optional) indentation of paragraphs. default = $INDENT

sub text2txt {

    my $text = $_[0];
    if($_[1]){
    my $indent = $_[1];
    }
    else{
    my $indent = $INDENT;
    }

    $text =~ s/^\.|([\n\(])\./$1\\\&./g;

    ## TABs are just whitespace
    $text =~ s/\t/ /g;

    $text = txt_tables($text);

    $text =~ s/\n\s*\n/\n\n/sgo;
    $text =~ s/\\dots/\\&.../go;
    $text =~ s/\\ldots/\\&.../go;
    $text =~ s/\\le/<=/go;
    $text =~ s/\\ge/>=/go;
    $text =~ s/\\%/%/sgo;
    $text =~ s/\\\$/\$/sgo;


    $text =~ s/\\Gamma/Gamma/go;
    $text =~ s/\\alpha/alpha/go;
    $text =~ s/\\Alpha/Alpha/go;
    $text =~ s/\\pi/pi/go;
    $text =~ s/\\mu/mu/go;
    $text =~ s/\\sigma/sigma/go;
    $text =~ s/\\Sigma/Sigma/go;
    $text =~ s/\\lambda/lambda/go;
    $text =~ s/\\beta/beta/go;
    $text =~ s/\\epsilon/epsilon/go;
    $text =~ s/\\left\(/\(/go;
    $text =~ s/\\right\)/\)/go;
    $text =~ s/\\R/R/go;
    $text =~ s/---/--/go;
    $text =~ s/--/-/go;
    $text =~ s/$EOB/\{/go;
    $text =~ s/$ECB/\}/go;

    $text = undefine_command($text, "link");
    $text = undefine_command($text, "emph");
    $text = undefine_command($text, "bold");
    $text = undefine_command($text, "textbf");
    $text = undefine_command($text, "mathbf");
    $text = undefine_command($text, "email");
    $text = replace_command($text, "file", "`", "'");
    $text = replace_command($text, "url", "<URL: ", ">");


    # handle equations:
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\eqn")
      &&  $text =~ /\\eqn/){
    my ($id, $eqn, $ascii) = get_arguments("eqn", $text, 2);
    $eqn = $ascii if $ascii;
    $eqn =~ s/\\([^&])/$1/go;
    $text =~ s/\\eqn(.*)$id/$eqn/s;
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\deqn") &&  $text =~ /\\deqn/){
    my ($id, $eqn, $ascii) = get_arguments("deqn", $text, 2);
    $eqn = $ascii if $ascii;
    $eqn =~ s/\\([^&])/$1/go;
    $eqn =~ s/^\n*//o;
    $eqn =~ s/\n*$//o;
    $text =~ s/\\deqn(.*)$id/\n\n.DS B\n$eqn\n.DE\n\n/s;
    }

    $list_depth=0;

    $text = replace_command($text,
                "itemize",
                "\n.in +$INDENT\n",
                "\n.in -$INDENT\n");

    $text = replace_command($text,
                "enumerate",
                "\n.inen +$INDENT\n",
                "\n.inen -$INDENT\n");

    $text =~ s/\\item\s+/\n.ti * \n/go;

    # handle "\describe"
    $text = replace_command($text,
                "describe",
                "\n.in +$INDENTD\n",
                "\n.in -$INDENTD\n");
    while(checkloop($loopcount++, $text, "\\item") && $text =~ /\\itemnormal/s)
    {
    my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
    my $descitem = text2txt($arg);
    $descitem = "\n.tide " . $descitem . " \n". text2txt($desc);
    $text =~ s/\\itemnormal.*$id/$descitem/s;
    }

    $text = txt_unescape_codes($text);
    unmark_brackets($text);
}


sub code2txt {

    my $text = $_[0];

    $text =~ s/^\.|([\n\(])\./$1\\&./g;
    $text =~ s/\\%/%/go;
    $text =~ s/\\ldots/.../go;
    $text =~ s/\\dots/.../go;

    $text = undefine_command($text, "link");
    $text = undefine_command($text, "dontrun");
    $text = drop_full_command($text, "testonly");

    unmark_brackets($text);
}



# generate wrapped text, undo tabifying, zap empty lines to \n
sub mywrap {
    my ($pre1, $pre2, $text) = @_;

    my $ntext;
    if(length($text) > 0) {
    $ntext = wrap($pre1, $pre2, $text);
    } else {
    $ntext = $pre1;
    }
    my @lines = split /\n/, $ntext;
    my $out = "", $line;
    foreach $line (@lines) {
    $line = expand $line;
    $line =~ s/^\s+$//o;
    $out .= $line . "\n";
    }
    $out =~ s/\n$//;
    return $out;
}

# Print text indent and filled: will put out a leading blank line.
sub txt_fill { # pre1, base, "text to be formatted"
    my ($pre1, $base, $text) = @_;
    my $INDENT = $base;
    my $indent = " " x $INDENT;

# first split by paragraphs

    $text =~ s/\\\\/\\bsl{}/go;
    $text =~ s/\\&\./\./go; # unescape code pieces
# A mess:  map  & \& \\& \\\& to  & & \& \&
    $text =~ s/\\&/&/go;
    $text =~ s/\\ / /go;
    $text =~ s/\\_/_/go;
    $text =~ s/\\$/\$/go;
    $text =~ s/\\#/#/go;
    $text =~ s/\\%/%/go;
    $text =~ s/\\bsl{}/\\/go;

    my @paras = split /\n\n/, $text;
    $indent1 = $pre1; $indent2 = $indent;

    my $enumlevel = 0, @enum;
    foreach $para (@paras) {
    # strip leading white space
    $para  =~ s/^\s+//;
    my $para0 = $para;
    $para0 =~ s/\n\s*/ /go;
    # check for a item in itemize etc
    if ($para =~ s/^[\n]*\.ti //) {
        $indent1 = $indent;
        $indent2 = $indent1 . (" " x 3);
        if ($enum{$enumlevel} > 0) {
        $para =~ s/\*/$enum{$enumlevel}./;
        $enum{$enumlevel} += 1;
        }
    }
    # check for a item in describe etc
    if ($para =~ s/^[\n]*\.tide ([^\n]+)\n//) {
        my $short = length($indent) + $INDENTDD - length($1);
        if ($short >= 0) {
        $indent1 = " " x $short . $1;
        } else {
        $indent1 = "  " . $1;
        $para = "\\cr ". $para;
        }    
        $indent2 = $indent . (" " x $INDENTDD);    
    }
        # check for .in or .inen command
    if ($para =~ s/^[\n]*\.in([^\ ]*) (.*)/\2/) {
        $INDENT = $INDENT + $para;
        $indent1 = $indent2 = $indent = " " x $INDENT;
        if ($para > 0) {
        $enumlevel += 1;
        if ($1 =~ /en/) {
            $enum{$enumlevel} = 1;
        } else {
            $enum{$enumlevel} = 0;
        }
        } else {
        $enumlevel -= 1;
        }
        # check for a \deqn block
    } elsif ($para0 =~ s/^\s*\.DS B\s*(.*)\.DE/\1/) {
        $para0 =~ s/\s*$//o;
        if(length($para0) > 65) {
        print txtout "\n", " ", $para0, "\n";
        } else {
        my $shift = int((70 - length($para0))/2);
        print txtout "\n", " " x $shift, $para0, "\n";
        }

    # check for a \tabular block
    } elsif ($para =~ s/^\.TS\n//) {
        my $format = $para;
        $format =~ s/([rlc]*)\n.*/$1/o;
        # parse the format of the tabular environment
        my $ncols = length($format);
        my @colformat = ();
        for($k=0; $k<$ncols; $k++){
        my $cf = substr($format, $k, 1);
        
        if($cf =~ /l/o){
            $colformat[$k] = "l";
        }
        elsif($cf =~ /r/o){
            $colformat[$k] = "r";
        }
        elsif($cf =~ /c/o){
            $colformat[$k] = "c";
        }
        }
        my @colwidths, $colwidth, $left, $right;
        for($l = 0; $l < $#colformat; $l++){ $colwidths[$l] = 0; }

        # now do the real work: split into lines and columns
        # first scan them and get the field widths.
        $para =~ s/([^\n]*)\n//o;
        my @rows = split(/\\cr/, $para);
        my $tmp, $line = "";
        for($k = 0; $k <= $#rows; $k++){
        my @cols = split(/\\tab/, $rows[$k]);
        die("Error:\n  $rows[$k]\\cr\n" .
            "does not fit tabular format \{$format\}\n")
            if ($#cols != $#colformat);
        for($l = 0; $l <= $#cols; $l++){
            $tmp = $cols[$l];
            $tmp =~ s/^\s*//;
            $tmp =~ s/\s*$//;
            $colwidth = length($tmp);
            if ($colwidth > $colwidths[$l]) { 
            $colwidths[$l] = $colwidth;
            }
        }
        }
        print txtout "\n";
        for($k = 0; $k <= $#rows; $k++){
        $line = "  "; # indent by two
        my @cols = split(/\\tab/, $rows[$k]);
        for($l = 0; $l <= $#cols; $l++){
            $tmp = $cols[$l];
            $tmp =~ s/^\s*//;
            $tmp =~ s/\s*$//;
            $colwidth = length($tmp);
            if ($colformat[$l] eq "r") {
            $left = $colwidths[$l] - $colwidth;
            } elsif ($colformat[$l] eq "c") {
            $left = int (($colwidths[$l] - $colwidth)/2);
            } else {
            $left = 0;
            }
            # 2 is the column gap
            $right = $colwidths[$l] - $colwidth + 2 - $left;
            if ($l == $#cols) {
            $right = 0; # don't need to right-pad end.
            }
            $line .= " " x $left . $tmp . " " x $right;
        }
        print txtout $indent, "$line\n";
        }

    # plain text    
    } else {
        $para =~ s/\n\s*/ /go;
        print txtout "\n";
        # Now split by \cr blocks
        my @blocks = split /\\cr/, $para;
        foreach $text (@blocks) {
        $text =~ s/^\s+//o;
        print txtout mywrap($indent1, $indent2, $text), "\n";
        $indent1 = $indent2;
        }
    }
    }
}

# Print a standard block
sub txt_print_block {

    my ($block,$title) = @_;
    my $next;

    if(defined $blocks{$block}){
    print txtout "\n";
    print txtout txt_header($title), ":\n";
    $ntext = text2txt($blocks{$block});
    txt_fill("     ", 5, $ntext);
    }
}

# Print a code block (preformatted)
sub txt_print_codeblock {

    my ($block,$title) = @_;
    my $ntext;
    my $indent = " " x 5;

    if(defined $blocks{$block}){
    print txtout "\n";
    print txtout txt_header($title), ":\n" if $title;
    $ntext = code2txt($blocks{$block});
    # make sure there is precisely one leading "\n"
    $ntext =~ s/^[\n]*//go;
    $ntext = "\n". $ntext;
    $ntext =~ s/\\&\././go;
    foreach $line (split /\n/, $ntext) {
        $line =~ s/\\\\/\\/go;
        $line =~ s/^\t/        /o;
        $line =~ s/^\s+$//o;
        if(length($line) > 0) {
        print txtout $indent, $line, "\n";
        } else {
        print txtout "\n";
        }
    }
    }
}


# Print the value or arguments block
sub txt_print_argblock {

    my ($block,$title) = @_;

    if(defined $blocks{$block}){

    print txtout "\n";
    print txtout txt_header($title), ":\n" if $title;

    my $text = $blocks{$block};

    if($text =~ /\\item/s){
        $text =~ /^(.*)(\\item.*)*/s;
        my ($begin, $rest) = split(/\\item/, $text, 2);
        if($begin){
        txt_fill("     ", 5, text2txt($begin));
        $text =~ s/^$begin//s;
        }
        my $loopcount = 0;
        while(checkloop($loopcount++, $text, "\\item") &&
          $text =~ /\\item/s){
        my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
        $arg = text2txt($arg);
        $arg =~ s/\\&//go;
        $desc = text2txt($desc);
        $arg0 = $arg.": ";
        $short = 10 - length($arg0);
        $arg0 = " " x $short. $arg0 if $short > 0;
        if (length($desc) > 0) {
            txt_fill($arg0, 10, $desc);
        } else {
            print txtout "\n", $arg0, "\n";
        }
        $text =~ s/.*$id//s;
        }
        txt_fill("     ", 5, text2txt($text));
    }
    else{
        txt_fill("     ", 5, text2txt($text));
    }
    }
}

# Print sections
sub txt_print_sections {

    my $section;

    for($section=0; $section<$max_section; $section++){
    print txtout "\n";
    print txtout txt_header($section_title[$section]), ":\n";
    txt_fill("     ", 5, text2txt($section_body[$section]));
    }
}


sub txt_unescape_codes {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "escaped code")
      && $text =~ /$ECODE($ID)/){
    my $id = $1;
    my $ec = code2txt($ecodes{$id});
    $text =~ s/$ECODE$id/\`$ec\'/;
    }
    $text;
}


sub txt_tables {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\tabular")
      &&  $text =~ /\\tabular/){

    my ($id, $format, $arg)  =
        get_arguments("tabular", $text, 2);

    $arg =~ s/\n/ /sgo;

    # remove trailing \cr (otherwise we get an empty last line)
    $arg =~ s/\\cr\s*$//go;

    # parse the format of the tabular environment
    my $ncols = length($format);
    my @colformat = ();
    for($k=0; $k<$ncols; $k++){
        my $cf = substr($format, $k, 1);

        if($cf =~ /l/o){
        $colformat[$k] = "l";
        }
        elsif($cf =~ /r/o){
        $colformat[$k] = "r";
        }
        elsif($cf =~ /c/o){
        $colformat[$k] = "c";
        }
        else{
        die("Error: unknown identifier \{$cf\} in" .
            " tabular format \{$format\}\n");
        }
    }

    my $table = "\n\n.TS\n$format\n$arg\n\n";

    $text =~ s/\\tabular.*$id/$table/s;
    }

    $text;
}


#==**************************** Sd ******************************


sub rdoc2Sd { # (filename)

    if($_[0]!= -1) {
      if($_[0]) { open Sdout, "> $_[0]"; } else { open Sdout, "| cat"; }
    }
    print Sdout "\.\\\" -*- nroff -*- generated from \.Rd format\n";
    print Sdout ".BG\n";
    print Sdout ".FN ", $blocks{"name"}, "\n";
    print Sdout ".TL\n";
    print Sdout $blocks{"title"}, "\n";
    if (defined $blocks{"description"}){
    print Sdout ".DN\n";
    print Sdout text2nroff($blocks{"description"}), "\n";
    }
    if (defined $blocks{"usage"}){
    print Sdout ".CS\n";
    print Sdout text2nroff($blocks{"usage"}), "\n";
    }
    Sd_print_argblock("arguments", ".RA");
    Sd_print_argblock("value", ".RT");
    Sd_print_sections();
    Sd_print_block("note", "Note");
    Sd_print_block("references", ".SH REFERENCES");
    print Sdout "\n";
    Sd_print_block("seealso", ".SA");
    print Sdout "\n";
    Sd_print_codeblock("examples", ".EX");
    while ($#keywords >= 0) {
    print Sdout ".KW ", shift( @keywords ), "\n";
    }
    print Sdout ".WR\n";
    close Sdout;
}

# Convert a Rdoc text string to nroff
#   $_[0]: text to be converted
#   $_[1]: (optional) indentation of paragraphs. default = $INDENT

# Print a standard block

sub Sd_print_block {

    my ($block,$macro) = @_;

    if(defined $blocks{$block}){
    print Sdout $macro, "\n";
    print Sdout text2nroff($blocks{$block});
    }
}

# Print a code block (preformatted)
sub Sd_print_codeblock {

    my ($block, $macro) = @_;

    if(defined $blocks{$block}){
    print Sdout $macro;
    print Sdout code2nroff($blocks{$block});
    }
}


# Print the value or arguments block
sub Sd_print_argblock {

    my ($block, $macro) = @_;

    if(defined $blocks{$block}){
    print Sdout $macro, "\n" if $macro;
    my $text = $blocks{$block};

    if($text =~ /\\item/s){
        $text =~ /^(.*)(\\item.*)*/s;
        my ($begin, $rest) = split(/\\item/, $text, 2);
        if($begin){
        print Sdout text2nroff($begin);
        $text =~ s/^$begin//s;
        }
        my $loopcount = 0;
        while(checkloop($loopcount++, $text, "\\item") &&
          $text =~ /\\item/s){
        my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
        $arg = text2nroff($arg);
        $desc = text2nroff($desc);
        print Sdout ".AG ", $arg, "\n";
        print Sdout $desc, "\n";
        $text =~ s/.*$id//s;
        }
    }
    else{
        print Sdout text2nroff($text), "\n";
    }
    }
}

# Print sections
sub Sd_print_sections {

    my $section;

    for($section=0; $section<$max_section; $section++){
    print Sdout "\n";
    print Sdout ".SH ";
    print Sdout $section_title[$section], "\n";
    print Sdout text2nroff($section_body[$section]), "\n";
    }
}

#==**nroff support****

### Convert a Rdoc text string to nroff
###   $_[0]: text to be converted
###   $_[1]: (optional) indentation of paragraphs. default = $INDENT

sub text2nroff {

    my $text = $_[0];
    if($_[1]){
    my $indent = $_[1];
    }
    else{
    my $indent = $INDENT;
    }

    $text =~ s/^\.|([\n\(])\./$1\\\&./g;

    ## TABs are just whitespace
    $text =~ s/\t/ /g;

    ## tables are pre-processed by the tbl(1) command, so this has to
    ## be done first
    $text = nroff_tables($text);
    $text =~ s/\\cr\n?/\n.br\n/sgo;

    $text =~ s/\n\s*\n/\n.IP \"\" $indent\n/sgo;
    $text =~ s/\\dots/\\&.../go;
    $text =~ s/\\ldots/\\&.../go;
    $text =~ s/\\le/<=/go;
    $text =~ s/\\ge/>=/go;
    $text =~ s/\\%/%/sgo;
    $text =~ s/\\\$/\$/sgo;


    $text =~ s/\\Gamma/Gamma/go;
    $text =~ s/\\alpha/alpha/go;
    $text =~ s/\\Alpha/Alpha/go;
    $text =~ s/\\pi/pi/go;
    $text =~ s/\\mu/mu/go;
    $text =~ s/\\sigma/sigma/go;
    $text =~ s/\\Sigma/Sigma/go;
    $text =~ s/\\lambda/lambda/go;
    $text =~ s/\\beta/beta/go;
    $text =~ s/\\epsilon/epsilon/go;
    $text =~ s/\\left\(/\(/go;
    $text =~ s/\\right\)/\)/go;
    $text =~ s/\\R/R/go;
    $text =~ s/---/--/go;
    $text =~ s/--/-/go;
    $text =~ s/$EOB/\{/go;
    $text =~ s/$ECB/\}/go;

    $text = undefine_command($text, "link");
    $text = undefine_command($text, "emph");
    $text = undefine_command($text, "bold");
    $text = undefine_command($text, "textbf");
    $text = undefine_command($text, "mathbf");
    $text = undefine_command($text, "email");
    $text = replace_command($text, "file", "`", "'");
    $text = replace_command($text, "url", "<URL: ", ">");


    # handle equations:
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\eqn")
      &&  $text =~ /\\eqn/){
    my ($id, $eqn, $ascii) = get_arguments("eqn", $text, 2);
    $eqn = $ascii if $ascii;
    $eqn =~ s/\\([^&])/$1/go;
    $text =~ s/\\eqn(.*)$id/$eqn/s;
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\deqn") &&  $text =~ /\\deqn/){
    my ($id, $eqn, $ascii) = get_arguments("deqn", $text, 2);
    $eqn = $ascii if $ascii;
    $eqn =~ s/\\([^&])/$1/go;
    $text =~ s/\\deqn(.*)$id/\n.DS B\n$eqn\n.DE\n/s;
    }

    $list_depth=0;

    $text = replace_command($text,
                "itemize",
                "\n.in +$INDENT\n",
                "\n.in -$INDENT\n");

    $text = replace_command($text,
                "enumerate",
                "\n.in +$INDENT\n",
                "\n.in -$INDENT\n");

    $text =~ s/\\item\s+/\n.ti -\\w\@*\\ \@u\n* /go;

    # handle "\describe"
    $text = replace_command($text,
                "describe",
                "\n.in +$INDENT\n",
                "\n.in -$INDENT\n");
    while(checkloop($loopcount++, $text, "\\item") && $text =~ /\\itemnormal/s)
    {
    my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
    $arg = text2nroff($arg);
    $descitem = ".IP \"\" $TAGOFF\n".
        ".ti -\\w\@" . $arg . 
        "\\ \@u\n" . $arg . "\\ " . text2nroff($desc);
    $descitem =~ s/\\&\././go;
    $text =~ s/\\itemnormal.*$id/$descitem/s;
    }
    $text = nroff_unescape_codes($text);
    unmark_brackets($text);
}

sub nroff_unescape_codes {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "escaped code")
      && $text =~ /$ECODE($ID)/){
    my $id = $1;
    my $ec = code2nroff($ecodes{$id});
    $text =~ s/$ECODE$id/\`$ec\'/;
    }
    $text;
}

sub code2nroff {

    my $text = $_[0];

    $text =~ s/^\.|([\n\(])\./$1\\&./g;
    $text =~ s/\\%/%/go;
    $text =~ s/\\ldots/.../go;
    $text =~ s/\\dots/.../go;
    $text =~ s/\\n/\\\\n/g;

    $text = undefine_command($text, "link");
    $text = undefine_command($text, "dontrun");
    $text = drop_full_command($text, "testonly");

    unmark_brackets($text);
}

sub nroff_tables {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\tabular")
      &&  $text =~ /\\tabular/){

    my ($id, $format, $arg)  =
        get_arguments("tabular", $text, 2);

    $arg =~ s/\n/ /sgo;

    # remove trailing \cr (otherwise we get an empty last line)
    $arg =~ s/\\cr\s*$//go;

    # parse the format of the tabular environment
    my $ncols = length($format);
    my @colformat = ();
    for($k=0; $k<$ncols; $k++){
        my $cf = substr($format, $k, 1);

        if($cf =~ /l/o){
        $colformat[$k] = "l";
        }
        elsif($cf =~ /r/o){
        $colformat[$k] = "r";
        }
        elsif($cf =~ /c/o){
        $colformat[$k] = "c";
        }
        else{
        die("Error: unknown identifier \{$cf\} in" .
            " tabular format \{$format\}\n");
        }
    }

    my $table = ".TS\n";
    for($l=0; $l<$#colformat; $l++){
        $table .= "$colformat[$l] ";
    }
    $table .= "$colformat[$#colformat].\n";


    # now do the real work: split into lines and columns
    my @rows = split(/\\cr/, $arg);
    for($k=0; $k<=$#rows;$k++){
        my @cols = split(/\\tab/, $rows[$k]);
        die("Error:\n  $rows[$k]\\cr\n" .
        "does not fit tabular format \{$format\}\n")
        if ($#cols != $#colformat);
        for($l=0; $l<$#cols; $l++){
        $cols[$l] =~ s/^\s*(.*)\s*$/$1/;
        $table .= "$cols[$l]\t";
        }
        $cols[$#cols] =~ s/^\s*(.*)\s*$/$1/;
        $table .= "$cols[$#cols]\n";
    }
    $table .= ".TE\n";

    $text =~ s/\\tabular.*$id/$table/s;
    }

    $text;
}

#==********************* Example ***********************************


sub rdoc2ex { # (filename)

    local($tit = striptitle($blocks{"title"}));

    if(defined $blocks{"examples"}) {
    if($_[0]!= -1) {
        if($_[0]) { open Exout, "> $_[0]"; } else { open Exout, "| cat"; }
    }
    $tit =~ s/\s+/ /g;
    print Exout "###--- >>> `"; print Exout $blocks{"name"};
    print Exout "' <<<----- "; print Exout $tit;
    print Exout "\n\n";
    if(@aliases) {
        foreach (@aliases) {
        print Exout "\t## alias\t help($_)\n";
        }
        print Exout "\n";
    }

    ex_print_exampleblock("examples", "Examples");

    if(@keywords) {
        print Exout "## Keywords: ";
        &print_vec(Exout, 'keywords');
    }
    print Exout "\n\n";

    close Exout;
    }
}

sub ex_print_exampleblock {

    my ($block,$env) = @_;

    if(defined $blocks{$block}){
    print Exout "##___ Examples ___:\n";
    print Exout  code2examp($blocks{$block});
    print Exout "\n";
    }
}

sub code2examp {
    #-  similar to ..2latex
    my $text = $_[0];

    $text =~ s/\\%/%/go;
    $text =~ s/\\ldots/.../go;
    $text =~ s/\\dots/.../go;

    $text = undefine_command($text, "link");
    $text = undefine_command($text, "testonly");
    $text = replace_prepend_command($text, "dontrun","##Don't run: ", "",
                    "##D ");
    $text =~ s/\\\\/\\/g;

    unmark_brackets($text);
}


#==********************* LaTeX ***********************************

sub ltxstriptitle { # text
    my $text = $_[0];
    $text =~ s/\\R/\\R\{\}/go;
    return $text;
}
sub foldorder {uc($a) cmp uc($b) or $a cmp $b;}

sub rdoc2latex {# (filename)

    my $c, $a;

    if($_[0]!= -1) {
      if($_[0]) { open latexout, "> $_[0]"; } else { open latexout, "| cat"; }
    }
    print latexout "\\Header\{";
    print latexout $blocks{"name"};
    print latexout "\}\{";
    print latexout ltxstriptitle($blocks{"title"});
    print latexout "\}\n";

    my $current = $blocks{"name"}, $generic, $cmd;
    foreach (sort foldorder @aliases) {
    $generic = $a = $_;
    $generic =~ s/\.data\.frame$/.dataframe/o;
    $generic =~ s/\.model\.matrix$/.modelmatrix/o;
    $generic =~ s/\.[^.]+$//o;
    if ($generic ne "" && $generic eq $current && $generic ne "ar") { 
        $cmd = "methalias"
    } else { $cmd = "alias"; $current = $a; }
    
    $c = code2latex($_,0);
    $a = latex_code_alias($c);
    print STDERR "rdoc2l: alias='$_', code2l(.)='$c', latex_c_a(.)='$a'\n"
        if $debug;
    printf latexout "\\%s\{%s\}\{%s\}\n", $cmd, $a, $blocks{"name"}
    unless /^\Q$blocks{"name"}\E$/; # Q..E : Quote (escape) Metacharacters
    }
    foreach (@keywords) {
    printf latexout "\\keyword\{%s\}\{%s\}\n", $_, $blocks{"name"}
    unless /^$/ ;
    }
    latex_print_block("description", "Description");
    latex_print_codeblock("usage", "Usage");
    latex_print_argblock("arguments", "Arguments");
    latex_print_block("format", "Format");
    latex_print_block("details", "Details");
    latex_print_argblock("value", "Value");

    latex_print_sections();

    latex_print_block("note", "Note");
    latex_print_block("author", "Author");
    latex_print_block("source", "Source");
    latex_print_block("references", "References");
    latex_print_block("seealso", "SeeAlso");
    latex_print_exampleblock("examples", "Examples");

    print latexout "\n";
    close latexout;
}

# The basic translator for `normal text'
sub text2latex {

    my $text = $_[0];

    $text =~ s/$EOB/\\\{/go;
    $text =~ s/$ECB/\\\}/go;

    $text =~ s/\\itemize/\\Itemize/go;
    $text =~ s/\\enumerate/\\Enumerate/go;
    $text =~ s/\\tabular/\\Tabular/go;
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\eqn")
      &&  $text =~ /\\eqn/){
    my ($id, $eqn, $ascii) = get_arguments("eqn", $text, 2);
    # $ascii may be empty
    $text =~ s/\\eqn.*$id/\\eeeeqn\{$eqn\}\{$ascii\}/s;
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\deqn")
      &&  $text =~ /\\deqn/){
    my ($id, $eqn, $ascii) = get_arguments("deqn", $text, 2);
    $text =~ s/\\deqn.*$id/\\dddeqn\{$eqn\}\{$ascii\}/s;
    }

    $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\item") && $text =~ /\\itemnormal/s)
    {
    my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
    $descitem = "\\DITEM[" . text2latex($arg) . "] " . text2latex($desc);
    $text =~ s/\\itemnormal.*$id/$descitem/s;
    }


    $text =~ s/\\eeeeqn/\\eqn/go;
    $text =~ s/\\dddeqn/\\deqn/og;
    $text =~ s/\\DITEM/\\item/og;

    $text =~ s/\\\\/\\bsl{}/go;
# A mess:  map  & \& \\& \\\& to  \& \& \bsl{}\& \bsl{}\&
    $text =~ s/([^\\])&/$1\\&/go;
    $text =~ s/\\R(\s+)/\\R\{\}$1/go;
    $text =~ s/\\cr\n\[/\\\\\{\}\n\[/go;
    $text =~ s/\\cr/\\\\/go;
    $text =~ s/\\tab(\s+)/&$1/go;

    ##-- We should escape $LATEX_SPEC  unless within `eqn' above ...
    ##-- this would escape them EVERYWHERE:
    ## $text =~ s/[$LATEX_SPEC]/\\$&/go;  #- escape them (not the "bsl" \)
    $text = latex_unescape_codes($text);
    unmark_brackets($text);
}

sub code2latex {

    my ($text, $hyper) = @_;

    $text =~ s/\\%/%/go;
    $text =~ s/\\ldots/.../go;
    $text =~ s/\\dots/.../go;

#    $text =~ s/\\\\/\\bsl{}/go;
    if($hyper) {
    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "\\link")
          && $text =~ /\\link/) {
        my ($id, $arg, $opt) = get_link($text);
        $text =~ s/\\link(\[.*\])?$id.*$id/HYPERLINK($arg)/s;
    }
    } else {
    $text = undefine_command($text, "link");
    }
    $text = undefine_command($text, "dontrun");
    $text = drop_full_command($text, "testonly");
    unmark_brackets($text);
}

sub latex_print_block {

    my ($block,$env) = @_;

    if(defined $blocks{$block}){
    print latexout "\\begin\{$env\}\\relax\n";
    print latexout text2latex($blocks{$block});
    print latexout "\\end\{$env\}\n";
    }
}

sub latex_print_codeblock {

    my ($block,$env) = @_;

    if(defined $blocks{$block}){
    print latexout "\\begin\{$env\}\n";
    print latexout "\\begin\{verbatim\}";
    print latexout code2latex($blocks{$block},0);
    print latexout "\\end\{verbatim\}\n";
    print latexout "\\end\{$env\}\n";
    }
}

sub latex_print_exampleblock {

    my ($block,$env) = @_;

    if(defined $blocks{$block}){
    print latexout "\\begin\{$env\}\n";
    print latexout "\\begin\{ExampleCode\}";
    my $out = code2latex($blocks{$block},0);
    $out =~ s/\\\\/\\/go;
    print latexout $out;
    print latexout "\\end\{ExampleCode\}\n";
    print latexout "\\end\{$env\}\n";
    }
}

sub latex_print_argblock {

    my ($block,$env) = @_;

    if(defined $blocks{$block}){

    print latexout "\\begin\{$env\}\n";

    my $text = $blocks{$block};

    if($text =~ /\\item/s){#-- if there is >= 1 "\item":  ldescription
        $text =~ /^(.*)(\\item.*)*/s;
        my ($begin, $rest) = split(/\\item/, $text, 2);
        if($begin){
        print latexout text2latex($begin);
        $text =~ s/^$begin//s;
        }
        print latexout "\\begin\{ldescription\}\n";
        my $loopcount = 0;
        while(checkloop($loopcount++, $text, "\\item")
          &&  $text =~ /\\item/s){
        my ($id, $arg, $desc)  = get_arguments("item", $text, 2);
        print latexout "\\item\[";
        print latexout latex_code_cmd(code2latex($arg,1));
        print latexout "\] ";
        print latexout text2latex($desc), "\n";
        $text =~ s/.*$id//s;
        }
        print latexout "\\end\{ldescription\}\n";
        print latexout text2latex($text);
    }
    else{
        print latexout text2latex($text);
    }
    print latexout "\\end\{$env\}\n";
    }
}

sub latex_print_sections {

    my $section;

    for($section=0; $section<$max_section; $section++){
    print latexout "\\begin\{Section\}\{" . $section_title[$section] . "\}\n";
    print latexout text2latex($section_body[$section]);
    print latexout "\\end\{Section\}\n";
    }
}

sub latex_unescape_codes {

    my $text = $_[0];

    my $loopcount = 0;
    while(checkloop($loopcount++, $text, "escaped code")
      && $text =~ /$ECODE($ID)/){
    my $id = $1;
    my $ec = latex_code_cmd(code2latex($ecodes{$id},1));
    $text =~ s/$ECODE$id/$ec/;
    }
    $text;
}


# The next two should transform links and aliases identically
# so use common subroutines

sub latex_code_trans {
    my $c = $_[0];
    my $BSL = '@BSL@';

    if($c =~ /[$LATEX_SPECIAL]/){
    $c =~ s/\\\\/$BSL/go;
    $c =~ s/\\([$LATEX_SPECIAL])/$1/go; #- unescape them (should not be escaped)
    $c =~ s/[$LATEX_SPECIAL]/\\$&/go; #- escape them
    $c =~ s/\\\^/\$\\,\\hat{\\,}\$/go;# ^ is SPECIAL
    $c =~ s/\\~/\$\\,\\tilde{\\,}\$/go;
    $c =~ s/$BSL/\\bsl{}/go;
    }
    ## avoid conversion to guillemots
    $c =~ s/<</<\{\}</;
    $c =~ s/>>/>\{\}>/;
    $c =~ /HYPERLINK\(([^)]*)\)/;
    my $link = latex_link_trans($1);
    $c =~ s/HYPERLINK\([^)]*\)/\\Link{$link}/go;
    $c;
}

sub latex_link_trans {
    my $c = $_[0];
    $c =~ s/<-\./<\\Rdash\./go;
    $c =~ s/<-$/<\\Rdash/go;
    $c
}

sub latex_code_cmd {

    my $code = $_[0];

    warn("\nERROR: found `\@' in \\code{...\}\n") if $code =~ /@/;
    $code = latex_code_trans ($code);
    $code = "\\code\{" . $code . "\}";
    $code;
}


# Tough examples are
#   Logic.Rd  Arithmetic.Rd  Extract.Rd  formula.Rd
sub latex_code_alias {

    my $c = $_[0];  ##-- $c is (typically) the OUTPUT of  code2latex(.) :
    $c = latex_code_trans ($c);
    $c = latex_link_trans ($c);
    $c =~ s/\!/"!/go; # "  This is the bibtex escape
    $c =~ s/\|/"|/go; # "
#      $c =~ s/@/"@/go; # "  Not currently valid R character
    $c;
}

#==************************ Compiled HTML ********************************


sub rdoc2chm { # (filename) ; 0 for STDOUT

    if($_[0]!= -1) {
      if($_[0]) { open htmlout, "> $_[0]"; } else { open htmlout, "| cat"; }
    }
    $using_chm = 1;
    print htmlout chm_functionhead(striptitle($blocks{"title"}), $pkgname,
                   $blocks{"name"});

    html_print_block("description", "Description");
    html_print_codeblock("usage", "Usage");
    html_print_argblock("arguments", "Arguments");
    html_print_block("format", "Format");
    html_print_block("details", "Details");
    html_print_argblock("value", "Value");

    html_print_sections();

    html_print_block("note", "Note");
    html_print_block("author", "Author(s)");
    html_print_block("source", "Source");
    html_print_block("references", "References");
    html_print_block("seealso", "See Also");
    html_print_codeblock("examples", "Examples");

    print htmlout html_functionfoot();
    close htmlout;
    $using_chm = 0;
}

# Local variables: **
# perl-indent-level: 4 **
# cperl-indent-level: 4 **
# page-delimiter: "^#==" **
# End: **