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/** R : A Computer Language for Statistical Data Analysis* Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka* Copyright (C) 1997-2015 The R Core Team** This program is free software; you can redistribute it and/or modify* it under the terms of the GNU General Public License as published by* the Free Software Foundation; either version 2 of the License, or* (at your option) any later version.** This program is distributed in the hope that it will be useful,* but WITHOUT ANY WARRANTY; without even the implied warranty of* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the* GNU General Public License for more details.** You should have received a copy of the GNU General Public License* along with this program; if not, a copy is available at* https://www.R-project.org/Licenses/*/#ifdef HAVE_CONFIG_H#include <config.h>#endif#include <Defn.h>#include <Internal.h>#include <float.h> // for DBL_MAX#define R_MSG_type _("invalid 'type' (%s) of argument")#define imax2(x, y) ((x < y) ? y : x)#define R_INT_MIN (1+INT_MIN)/* since INT_MIN is the NA_INTEGER value ! */#define Int2Real(i) ((i == NA_INTEGER) ? NA_REAL : (double)i)#ifdef DEBUG_sum#define DbgP1(s) REprintf(s)#define DbgP2(s,a) REprintf(s,a)#define DbgP3(s,a,b) REprintf(s,a,b)#else#define DbgP1(s)#define DbgP2(s,a)#define DbgP3(s,a,b)#endif#ifdef LONG_INTstatic Rboolean isum(int *x, R_xlen_t n, int *value, Rboolean narm, SEXP call){LONG_INT s = 0; // at least 64-bitRboolean updated = FALSE;#ifdef LONG_VECTOR_SUPPORTint ii = R_INT_MIN; // need > 2^32 entries to overflow.#endiffor (R_xlen_t i = 0; i < n; i++) {if (x[i] != NA_INTEGER) {if(!updated) updated = TRUE;s += x[i];#ifdef LONG_VECTOR_SUPPORTif (ii++ > 1000) {ii = 0;if (s > 9000000000000000L || s < -9000000000000000L) {if(!updated) updated = TRUE;*value = NA_INTEGER;warningcall(call, _("integer overflow - use sum(as.numeric(.))"));return updated;}}#endif} else if (!narm) {if(!updated) updated = TRUE;*value = NA_INTEGER;return updated;}}if(s > INT_MAX || s < R_INT_MIN){warningcall(call, _("integer overflow - use sum(as.numeric(.))"));*value = NA_INTEGER;}else *value = (int) s;return updated;}#else/* Version from R 3.0.0: should never be used with a C99/C11 compiler */static Rboolean isum(int *x, R_xlen_t n, int *value, Rboolean narm, SEXP call){double s = 0.0;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (x[i] != NA_INTEGER) {if(!updated) updated = TRUE;s += x[i];} else if (!narm) {if(!updated) updated = TRUE;*value = NA_INTEGER;return updated;}}if(s > INT_MAX || s < R_INT_MIN){warningcall(call, _("integer overflow - use sum(as.numeric(.))"));*value = NA_INTEGER;}else *value = (int) s;return updated;}#endifstatic Rboolean rsum(double *x, R_xlen_t n, double *value, Rboolean narm){LDOUBLE s = 0.0;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (!narm || !ISNAN(x[i])) {if(!updated) updated = TRUE;s += x[i];}}if(s > DBL_MAX) *value = R_PosInf;else if (s < -DBL_MAX) *value = R_NegInf;else *value = (double) s;return updated;}static Rboolean csum(Rcomplex *x, R_xlen_t n, Rcomplex *value, Rboolean narm){LDOUBLE sr = 0.0, si = 0.0;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (!narm || (!ISNAN(x[i].r) && !ISNAN(x[i].i))) {if(!updated) updated = TRUE;sr += x[i].r;si += x[i].i;}}value->r = (double) sr;value->i = (double) si;return updated;}static Rboolean imin(int *x, R_xlen_t n, int *value, Rboolean narm){int s = 0 /* -Wall */;Rboolean updated = FALSE;/* Used to set s = INT_MAX, but this ignored INT_MAX in the input */for (R_xlen_t i = 0; i < n; i++) {if (x[i] != NA_INTEGER) {if (!updated || s > x[i]) {s = x[i];if(!updated) updated = TRUE;}}else if (!narm) {*value = NA_INTEGER;return(TRUE);}}*value = s;return updated;}static Rboolean rmin(double *x, R_xlen_t n, double *value, Rboolean narm){double s = 0.0; /* -Wall */Rboolean updated = FALSE;/* s = R_PosInf; */for (R_xlen_t i = 0; i < n; i++) {if (ISNAN(x[i])) {/* Na(N) */if (!narm) {if(!ISNA(s)) s = x[i]; /* so any NA trumps all NaNs */if(!updated) updated = TRUE;}}else if (!updated || x[i] < s) { /* Never true if s is NA/NaN */s = x[i];if(!updated) updated = TRUE;}}*value = s;return updated;}static Rboolean smin(SEXP x, SEXP *value, Rboolean narm){SEXP s = NA_STRING; /* -Wall */Rboolean updated = FALSE;const void *vmax = vmaxget(); // precautionary for Scollatefor (R_xlen_t i = 0; i < XLENGTH(x); i++) {if (STRING_ELT(x, i) != NA_STRING) {if (!updated ||(s != STRING_ELT(x, i) && Scollate(s, STRING_ELT(x, i)) > 0)) {s = STRING_ELT(x, i);if(!updated) updated = TRUE;}}else if (!narm) {*value = NA_STRING;return(TRUE);}}*value = s;vmaxset(vmax);return updated;}static Rboolean imax(int *x, R_xlen_t n, int *value, Rboolean narm){int s = 0 /* -Wall */;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (x[i] != NA_INTEGER) {if (!updated || s < x[i]) {s = x[i];if(!updated) updated = TRUE;}} else if (!narm) {*value = NA_INTEGER;return(TRUE);}}*value = s;return updated;}static Rboolean rmax(double *x, R_xlen_t n, double *value, Rboolean narm){double s = 0.0 /* -Wall */;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (ISNAN(x[i])) {/* Na(N) */if (!narm) {if(!ISNA(s)) s = x[i]; /* so any NA trumps all NaNs */if(!updated) updated = TRUE;}}else if (!updated || x[i] > s) { /* Never true if s is NA/NaN */s = x[i];if(!updated) updated = TRUE;}}*value = s;return updated;}static Rboolean smax(SEXP x, SEXP *value, Rboolean narm){SEXP s = NA_STRING; /* -Wall */Rboolean updated = FALSE;const void *vmax = vmaxget(); // precautionary for Scollatefor (R_xlen_t i = 0; i < XLENGTH(x); i++) {if (STRING_ELT(x, i) != NA_STRING) {if (!updated ||(s != STRING_ELT(x, i) && Scollate(s, STRING_ELT(x, i)) < 0)) {s = STRING_ELT(x, i);if(!updated) updated = TRUE;}}else if (!narm) {*value = NA_STRING;return(TRUE);}}*value = s;vmaxset(vmax);return updated;}static Rboolean iprod(int *x, R_xlen_t n, double *value, Rboolean narm){LDOUBLE s = 1.0;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (x[i] != NA_INTEGER) {s *= x[i];if(!updated) updated = TRUE;}else if (!narm) {if(!updated) updated = TRUE;*value = NA_REAL;return updated;}if(ISNAN(s)) { /* how can this happen? */*value = NA_REAL;return updated;}}// This could over/underflow (does in package POT)if(s > DBL_MAX) *value = R_PosInf;else if (s < -DBL_MAX) *value = R_NegInf;else *value = (double) s;return updated;}static Rboolean rprod(double *x, R_xlen_t n, double *value, Rboolean narm){LDOUBLE s = 1.0;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (!narm || !ISNAN(x[i])) {if(!updated) updated = TRUE;s *= x[i];}}if(s > DBL_MAX) *value = R_PosInf;else if (s < -DBL_MAX) *value = R_NegInf;else *value = (double) s;return updated;}static Rboolean cprod(Rcomplex *x, R_xlen_t n, Rcomplex *value, Rboolean narm){LDOUBLE sr = 1.0, si = 0.0;Rboolean updated = FALSE;for (R_xlen_t i = 0; i < n; i++) {if (!narm || (!ISNAN(x[i].r) && !ISNAN(x[i].i))) {if(!updated) updated = TRUE;LDOUBLE tr = sr, ti = si;sr = tr * x[i].r - ti * x[i].i;si = tr * x[i].i + ti * x[i].r;}}value->r = (double) sr;value->i = (double) si;return updated;}attribute_hiddenSEXP fixup_NaRm(SEXP args){SEXP t, na_value;/* Need to make sure na.rm is last and exists */na_value = ScalarLogical(FALSE);for(SEXP a = args, prev = R_NilValue; a != R_NilValue; a = CDR(a)) {if(TAG(a) == R_NaRmSymbol) {if(CDR(a) == R_NilValue) return args;na_value = CAR(a);if(prev == R_NilValue) args = CDR(a);else SETCDR(prev, CDR(a));}prev = a;}PROTECT(na_value);t = CONS(na_value, R_NilValue);UNPROTECT(1);PROTECT(t);SET_TAG(t, R_NaRmSymbol);if (args == R_NilValue)args = t;else {SEXP r = args;while (CDR(r) != R_NilValue) r = CDR(r);SETCDR(r, t);}UNPROTECT(1);return args;}/* do_summary provides a variety of data summariesop : 0 = sum, 1 = mean, 2 = min, 3 = max, 4 = prod*//* NOTE: mean() is rather different as only one arg and no na.rm, and* dispatch is from an R-level generic, this being a special case of* mean.default.*/SEXP attribute_hidden do_summary(SEXP call, SEXP op, SEXP args, SEXP env){SEXP ans, a, stmp = NA_STRING /* -Wall */, scum = NA_STRING, call2;double tmp = 0.0, s;Rcomplex z, ztmp, zcum={0.0, 0.0} /* -Wall */;int itmp = 0, icum = 0, int_a, real_a, empty, warn = 0 /* dummy */;SEXPTYPE ans_type;/* only INTEGER, REAL, COMPLEX or STRSXP here */Rboolean narm;int updated;/* updated := 1 , as soon as (i)tmp (do_summary),or *value ([ir]min / max) is assigned */if(PRIMVAL(op) == 1) { /* mean */LDOUBLE s = 0., si = 0., t = 0., ti = 0.;R_xlen_t i, n = XLENGTH(CAR(args));SEXP x = CAR(args);switch(TYPEOF(x)) {case LGLSXP:case INTSXP:PROTECT(ans = allocVector(REALSXP, 1));for (i = 0; i < n; i++) {if(INTEGER(x)[i] == NA_INTEGER) {REAL(ans)[0] = R_NaReal;UNPROTECT(1); /* ans */return ans;}s += INTEGER(x)[i];}REAL(ans)[0] = (double) (s/n);break;case REALSXP:PROTECT(ans = allocVector(REALSXP, 1));for (i = 0; i < n; i++) s += REAL(x)[i];s /= n;if(R_FINITE((double)s)) {for (i = 0; i < n; i++) t += (REAL(x)[i] - s);s += t/n;}REAL(ans)[0] = (double) s;break;case CPLXSXP:PROTECT(ans = allocVector(CPLXSXP, 1));for (i = 0; i < n; i++) {s += COMPLEX(x)[i].r;si += COMPLEX(x)[i].i;}s /= n; si /= n;if( R_FINITE((double)s) && R_FINITE((double)si) ) {for (i = 0; i < n; i++) {t += COMPLEX(x)[i].r - s;ti += COMPLEX(x)[i].i - si;}s += t/n; si += ti/n;}COMPLEX(ans)[0].r = (double) s;COMPLEX(ans)[0].i = (double) si;break;default:error(R_MSG_type, type2char(TYPEOF(x)));ans = R_NilValue; // -Wall on clang 4.2}UNPROTECT(1); /* ans */return ans;}/* match to foo(..., na.rm=FALSE) */PROTECT(args = fixup_NaRm(args));PROTECT(call2 = shallow_duplicate(call));SETCDR(call2, args);if (DispatchGroup("Summary", call2, op, args, env, &ans)) {UNPROTECT(2); /* call2, args */return(ans);}UNPROTECT(1); /* call2 */#ifdef DEBUG_SummaryREprintf("C do_summary(op%s, *): did NOT dispatch\n", PRIMNAME(op));#endifans = matchArgExact(R_NaRmSymbol, &args);narm = asLogical(ans);updated = 0;empty = 1;/*- =1: only zero-length arguments, or NA with na.rm=T */int iop = PRIMVAL(op);switch(iop) {case 0:/* sum *//* we need to find out if _all_ the arguments are integer or logicalin advance, as we might overflow before we find out. NULL isdocumented to be the same as integer(0).*/a = args;int_a = 1;while (a != R_NilValue) {if(!isInteger(CAR(a)) && !isLogical(CAR(a)) && !isNull(CAR(a))) {int_a = 0;break;}a = CDR(a);}ans_type = int_a ? INTSXP: REALSXP; /* try to keep if possible.. */zcum.r = zcum.i = 0.; icum = 0;break;case 2:/* min */DbgP2("do_summary: min(.. na.rm=%d) ", narm);ans_type = INTSXP;zcum.r = R_PosInf;icum = INT_MAX;break;case 3:/* max */DbgP2("do_summary: max(.. na.rm=%d) ", narm);ans_type = INTSXP;zcum.r = R_NegInf;;icum = R_INT_MIN;break;case 4:/* prod */ans_type = REALSXP;zcum.r = 1.;zcum.i = 0.;break;default:errorcall(call,_("internal error ('op = %d' in do_summary).\t Call a Guru"),iop);return R_NilValue;/*-Wall */}/*-- now loop over all arguments. Do the 'op' switch INSIDE : */PROTECT(scum);while (args != R_NilValue) {a = CAR(args);int_a = 0;/* int_a = 1 <--> a is INTEGER */real_a = 0;if(xlength(a) > 0) {updated = 0;/*- GLOBAL -*/switch(iop) {case 2:/* min */case 3:/* max */switch(TYPEOF(a)) {case LGLSXP:case INTSXP:int_a = 1;if (iop == 2) updated = imin(INTEGER(a), XLENGTH(a), &itmp, narm);else updated = imax(INTEGER(a), XLENGTH(a), &itmp, narm);break;case REALSXP:real_a = 1;if(ans_type == INTSXP) {/* change to REAL */ans_type = REALSXP;if(!empty) zcum.r = Int2Real(icum);}if (iop == 2) updated = rmin(REAL(a), XLENGTH(a), &tmp, narm);else updated = rmax(REAL(a), XLENGTH(a), &tmp, narm);break;case STRSXP:if(!empty && ans_type == INTSXP) {scum = StringFromInteger(icum, &warn);UNPROTECT(1); /* scum */PROTECT(scum);} else if(!empty && ans_type == REALSXP) {scum = StringFromReal(zcum.r, &warn);UNPROTECT(1); /* scum */PROTECT(scum);}ans_type = STRSXP;if (iop == 2) updated = smin(a, &stmp, narm);else updated = smax(a, &stmp, narm);break;default:goto invalid_type;}if(updated) {/* 'a' had non-NA elements; --> "add" tmp or itmp*/DbgP1(" updated:");if(ans_type == INTSXP) {DbgP3(" INT: (old)icum= %ld, itmp=%ld\n", icum,itmp);if (icum == NA_INTEGER); /* NA trumps anything */else if (itmp == NA_INTEGER ||(iop == 2 && itmp < icum) || /* min */(iop == 3 && itmp > icum)) /* max */icum = itmp;} else if(ans_type == REALSXP) {if (int_a) tmp = Int2Real(itmp);DbgP3(" REAL: (old)cum= %g, tmp=%g\n", zcum.r,tmp);if (ISNA(zcum.r)); /* NA trumps anything */else if (ISNAN(tmp)) {if (ISNA(tmp)) zcum.r = tmp;else zcum.r += tmp;/* NA or NaN */} else if((iop == 2 && tmp < zcum.r) ||(iop == 3 && tmp > zcum.r)) zcum.r = tmp;} else if(ans_type == STRSXP) {if(empty) scum = stmp;else if (scum != NA_STRING) {if(int_a)stmp = StringFromInteger(itmp, &warn);if(real_a)stmp = StringFromReal(tmp, &warn);PROTECT(stmp);if(stmp == NA_STRING ||(iop == 2 && stmp != scum && Scollate(stmp, scum) < 0) ||(iop == 3 && stmp != scum && Scollate(stmp, scum) > 0) )scum = stmp;UNPROTECT(1); /* stmp */}UNPROTECT(1); /* scum */PROTECT(scum);}}/*updated*/ else {/*-- in what cases does this happen here at all?-- if there are no non-missing elements.*/DbgP2(" NOT updated [!! RARE !!]: int_a=%d\n", int_a);}break;/*--- end of min() / max() ---*/case 0:/* sum */switch(TYPEOF(a)) {case LGLSXP:case INTSXP:updated = isum(TYPEOF(a) == LGLSXP ?LOGICAL(a) :INTEGER(a), XLENGTH(a),&itmp, narm, call);if(updated) {if(itmp == NA_INTEGER) goto na_answer;if(ans_type == INTSXP) {s = (double) icum + (double) itmp;if(s > INT_MAX || s < R_INT_MIN){warningcall(call,_("Integer overflow - use sum(as.numeric(.))"));goto na_answer;}else icum += itmp;} elsezcum.r += Int2Real(itmp);}break;case REALSXP:if(ans_type == INTSXP) {ans_type = REALSXP;if(!empty) zcum.r = Int2Real(icum);}updated = rsum(REAL(a), XLENGTH(a), &tmp, narm);if(updated) {zcum.r += tmp;}break;case CPLXSXP:if(ans_type == INTSXP) {ans_type = CPLXSXP;if(!empty) zcum.r = Int2Real(icum);} else if (ans_type == REALSXP)ans_type = CPLXSXP;updated = csum(COMPLEX(a), XLENGTH(a), &ztmp, narm);if(updated) {zcum.r += ztmp.r;zcum.i += ztmp.i;}break;default:goto invalid_type;}break;/* sum() part */case 4:/* prod */switch(TYPEOF(a)) {case LGLSXP:case INTSXP:case REALSXP:if(TYPEOF(a) == REALSXP)updated = rprod(REAL(a), XLENGTH(a), &tmp, narm);elseupdated = iprod(INTEGER(a), XLENGTH(a), &tmp, narm);if(updated) {zcum.r *= tmp;zcum.i *= tmp;}break;case CPLXSXP:ans_type = CPLXSXP;updated = cprod(COMPLEX(a), XLENGTH(a), &ztmp, narm);if(updated) {z.r = zcum.r;z.i = zcum.i;zcum.r = z.r * ztmp.r - z.i * ztmp.i;zcum.i = z.r * ztmp.i + z.i * ztmp.r;}break;default:goto invalid_type;}break;/* prod() part */} /* switch(iop) */} else { /* len(a)=0 *//* Even though this has length zero it can still be invalid,e.g. list() or raw() */switch(TYPEOF(a)) {case LGLSXP:case INTSXP:case REALSXP:case NILSXP: /* OK historically, e.g. PR#1283 */break;case CPLXSXP:if (iop == 2 || iop == 3) goto invalid_type;break;case STRSXP:if (iop == 2 || iop == 3) {if(!empty && ans_type == INTSXP) {scum = StringFromInteger(icum, &warn);UNPROTECT(1); /* scum */PROTECT(scum);} else if(!empty && ans_type == REALSXP) {scum = StringFromReal(zcum.r, &warn);UNPROTECT(1); /* scum */PROTECT(scum);}ans_type = STRSXP;break;}default:goto invalid_type;}if(ans_type < TYPEOF(a) && ans_type != CPLXSXP) {if(!empty && ans_type == INTSXP)zcum.r = Int2Real(icum);ans_type = TYPEOF(a);}}DbgP3(" .. upd.=%d, empty: old=%d", updated, empty);if(empty && updated) empty=0;DbgP2(", new=%d\n", empty);args = CDR(args);} /*-- while(..) loop over args *//*-------------------------------------------------------*/if(empty && (iop == 2 || iop == 3)) {if(ans_type == STRSXP) {warningcall(call, _("no non-missing arguments, returning NA"));} else {if(iop == 2)warningcall(call, _("no non-missing arguments to min; returning Inf"));elsewarningcall(call, _("no non-missing arguments to max; returning -Inf"));ans_type = REALSXP;}}ans = allocVector(ans_type, 1);switch(ans_type) {case INTSXP: INTEGER(ans)[0] = icum;break;case REALSXP: REAL(ans)[0] = zcum.r; break;case CPLXSXP: COMPLEX(ans)[0].r = zcum.r; COMPLEX(ans)[0].i = zcum.i;break;case STRSXP: SET_STRING_ELT(ans, 0, scum); break;}UNPROTECT(2); /* scum, args */return ans;na_answer: /* only sum(INTSXP, ...) case currently used */ans = allocVector(ans_type, 1);switch(ans_type) {case INTSXP: INTEGER(ans)[0] = NA_INTEGER; break;case REALSXP: REAL(ans)[0] = NA_REAL; break;case CPLXSXP: COMPLEX(ans)[0].r = COMPLEX(ans)[0].i = NA_REAL; break;case STRSXP: SET_STRING_ELT(ans, 0, NA_STRING); break;}UNPROTECT(2); /* scum, args */return ans;invalid_type:errorcall(call, R_MSG_type, type2char(TYPEOF(a)));return R_NilValue;}/* do_summary */SEXP attribute_hidden do_range(SEXP call, SEXP op, SEXP args, SEXP env){SEXP ans, a, b, prargs, call2;PROTECT(args = fixup_NaRm(args));PROTECT(call2 = shallow_duplicate(call));SETCDR(call2, args);if (DispatchGroup("Summary", call2, op, args, env, &ans)) {UNPROTECT(2);return(ans);}UNPROTECT(1);PROTECT(op = findFun(install("range.default"), env));PROTECT(prargs = promiseArgs(args, R_GlobalEnv));for (a = args, b = prargs; a != R_NilValue; a = CDR(a), b = CDR(b))SET_PRVALUE(CAR(b), CAR(a));ans = applyClosure(call, op, prargs, env, R_NilValue);UNPROTECT(3);return(ans);}// which.min(x) : The index (starting at 1), of the first min(x) in x// which.max(x) : The index (starting at 1), of the first max(x) in xSEXP attribute_hidden do_first_min(SEXP call, SEXP op, SEXP args, SEXP rho){SEXP sx = CAR(args), ans;int nprot = 1;R_xlen_t i, n, indx = -1;checkArity(op, args);if (!isNumeric(sx)) {PROTECT(sx = coerceVector(CAR(args), REALSXP)); nprot++;}n = XLENGTH(sx);switch(TYPEOF(sx)) {case LGLSXP: // with only (TRUE, FALSE, NA) -- may be fast{int *r = LOGICAL(sx);if(PRIMVAL(op) == 0) { /* which.min */for (i = 0; i < n; i++)if (r[i] == FALSE) {indx = i; break; // found FALSE: done} else if (indx == -1 && r[i] != NA_LOGICAL) {indx = i; // first TRUE}} else { /* which.max */for (i = 0; i < n; i++)if (r[i] == TRUE) {indx = i; break; // found TRUE: done} else if (indx == -1 && r[i] != NA_LOGICAL) {indx = i; // first FALSE}}}break;case INTSXP:{int s, *r = INTEGER(sx);if(PRIMVAL(op) == 0) { /* which.min */s = INT_MAX;for (i = 0; i < n; i++)if (r[i] != NA_INTEGER && (r[i] < s || indx == -1)) {s = r[i]; indx = i;}} else { /* which.max */s = INT_MIN;for (i = 0; i < n; i++)if (r[i] != NA_INTEGER && (r[i] > s || indx == -1)) {s = r[i]; indx = i;}}}break;case REALSXP:{double s, *r = REAL(sx);if(PRIMVAL(op) == 0) { /* which.min */s = R_PosInf;for (i = 0; i < n; i++)if ( !ISNAN(r[i]) && (r[i] < s || indx == -1) ) {s = r[i]; indx = i;}} else { /* which.max */s = R_NegInf;for (i = 0; i < n; i++)if ( !ISNAN(r[i]) && (r[i] > s || indx == -1) ) {s = r[i]; indx = i;}}}} // switch()i = (indx != -1);Rboolean large = (indx + 1) > INT_MAX;PROTECT(ans = allocVector(large ? REALSXP : INTSXP, i ? 1 : 0));if (i) {if(large)REAL(ans)[0] = (double)indx + 1;elseINTEGER(ans)[0] = (int)indx + 1;if (getAttrib(sx, R_NamesSymbol) != R_NilValue) { /* preserve names */SEXP ansnam;PROTECT(ansnam =ScalarString(STRING_ELT(getAttrib(sx, R_NamesSymbol), indx)));setAttrib(ans, R_NamesSymbol, ansnam);UNPROTECT(1);}}UNPROTECT(nprot);return ans;}/* which(x) : indices of non-NA TRUE values in x */SEXP attribute_hidden do_which(SEXP call, SEXP op, SEXP args, SEXP rho){SEXP v, v_nms, ans, ans_nms = R_NilValue;int i, j = 0, len, *buf;checkArity(op, args);v = CAR(args);if (!isLogical(v))error(_("argument to 'which' is not logical"));len = length(v);buf = (int *) R_alloc(len, sizeof(int));for (i = 0; i < len; i++) {if (LOGICAL(v)[i] == TRUE) {buf[j] = i + 1;j++;}}len = j;PROTECT(ans = allocVector(INTSXP, len));if(len) memcpy(INTEGER(ans), buf, sizeof(int) * len);if ((v_nms = getAttrib(v, R_NamesSymbol)) != R_NilValue) {PROTECT(ans_nms = allocVector(STRSXP, len));for (i = 0; i < len; i++) {SET_STRING_ELT(ans_nms, i,STRING_ELT(v_nms, INTEGER(ans)[i] - 1));}setAttrib(ans, R_NamesSymbol, ans_nms);UNPROTECT(1);}UNPROTECT(1);return ans;}/* op = 0 is pmin, op = 1 is pmaxNULL and logicals are handled as if they had been coerced to integer.*/SEXP attribute_hidden do_pmin(SEXP call, SEXP op, SEXP args, SEXP rho){SEXP a, x, ans;int narm;R_xlen_t i, n, len;SEXPTYPE type, anstype;narm = asLogical(CAR(args));if(narm == NA_LOGICAL)error(_("invalid '%s' value"), "na.rm");args = CDR(args);x = CAR(args);if(args == R_NilValue) error(_("no arguments"));anstype = TYPEOF(x);switch(anstype) {case NILSXP:case LGLSXP:case INTSXP:case REALSXP:case STRSXP:break;default:error(_("invalid input type"));}a = CDR(args);if(a == R_NilValue) return x; /* one input */len = xlength(x); /* not LENGTH, as NULL is allowed */for(; a != R_NilValue; a = CDR(a)) {x = CAR(a);type = TYPEOF(x);switch(type) {case NILSXP:case LGLSXP:case INTSXP:case REALSXP:case STRSXP:break;default:error(_("invalid input type"));}if(type > anstype) anstype = type;n = xlength(x);if ((len > 0) ^ (n > 0)) {// till 2.15.0: error(_("cannot mix 0-length vectors with others"));len = 0;break;}len = imax2(len, n);}if(anstype < INTSXP) anstype = INTSXP;if(len == 0) return allocVector(anstype, 0);/* Check for fractional recycling (added in 2.14.0) */for(a = args; a != R_NilValue; a = CDR(a)) {n = length(CAR(a));if (len % n) {warning(_("an argument will be fractionally recycled"));break;}}PROTECT(ans = allocVector(anstype, len));switch(anstype) {case INTSXP:{int *r, *ra = INTEGER(ans), tmp;PROTECT(x = coerceVector(CAR(args), anstype));r = INTEGER(x);n = XLENGTH(x);for(i = 0; i < len; i++) ra[i] = r[i % n];UNPROTECT(1);for(a = CDR(args); a != R_NilValue; a = CDR(a)) {x = CAR(a);PROTECT(x = coerceVector(CAR(a), anstype));n = XLENGTH(x);r = INTEGER(x);for(i = 0; i < len; i++) {tmp = r[i % n];if(PRIMVAL(op) == 1) {if( (narm && ra[i] == NA_INTEGER) ||(ra[i] != NA_INTEGER && tmp != NA_INTEGER&& tmp > ra[i]) ||(!narm && tmp == NA_INTEGER) )ra[i] = tmp;} else {if( (narm && ra[i] == NA_INTEGER) ||(ra[i] != NA_INTEGER && tmp != NA_INTEGER&& tmp < ra[i]) ||(!narm && tmp == NA_INTEGER) )ra[i] = tmp;}}UNPROTECT(1);}}break;case REALSXP:{double *r, *ra = REAL(ans), tmp;PROTECT(x = coerceVector(CAR(args), anstype));r = REAL(x);n = XLENGTH(x);for(i = 0; i < len; i++) ra[i] = r[i % n];UNPROTECT(1);for(a = CDR(args); a != R_NilValue; a = CDR(a)) {PROTECT(x = coerceVector(CAR(a), anstype));n = XLENGTH(x);r = REAL(x);for(i = 0; i < len; i++) {tmp = r[i % n];if(PRIMVAL(op) == 1) {if( (narm && ISNAN(ra[i])) ||(!ISNAN(ra[i]) && !ISNAN(tmp) && tmp > ra[i]) ||(!narm && ISNAN(tmp)) )ra[i] = tmp;} else {if( (narm && ISNAN(ra[i])) ||(!ISNAN(ra[i]) && !ISNAN(tmp) && tmp < ra[i]) ||(!narm && ISNAN(tmp)) )ra[i] = tmp;}}UNPROTECT(1);}}break;case STRSXP:{PROTECT(x = coerceVector(CAR(args), anstype));n = XLENGTH(x);for(i = 0; i < len; i++) SET_STRING_ELT(ans, i, STRING_ELT(x, i % n));UNPROTECT(1);for(a = CDR(args); a != R_NilValue; a = CDR(a)) {SEXP tmp, t2;PROTECT(x = coerceVector(CAR(a), anstype));n = XLENGTH(x);for(i = 0; i < len; i++) {tmp = STRING_ELT(x, i % n);t2 = STRING_ELT(ans, i);if(PRIMVAL(op) == 1) {if( (narm && t2 == NA_STRING) ||(t2 != NA_STRING && tmp != NA_STRING && tmp != t2 && Scollate(tmp, t2) > 0) ||(!narm && tmp == NA_STRING) )SET_STRING_ELT(ans, i, tmp);} else {if( (narm && t2 == NA_STRING) ||(t2 != NA_STRING && tmp != NA_STRING && tmp != t2 && Scollate(tmp, t2) < 0) ||(!narm && tmp == NA_STRING) )SET_STRING_ELT(ans, i, tmp);}}UNPROTECT(1);}}break;default:break;}UNPROTECT(1);return ans;}