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/** R : A Computer Language for Statistical Data Analysis* Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka* Copyright (C) 2002-3 The R Foundation** This program is free software; you can redistribute it and/or modify* it under the terms of the GNU General Public License as published by* the Free Software Foundation; either version 2, or (at your option)* any later version.** This program is distributed in the hope that it will be useful,* but WITHOUT ANY WARRANTY; without even the implied warranty of* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the* GNU General Public License for more details.** A copy of the GNU General Public License is available via WWW at* http://www.gnu.org/copyleft/gpl.html. You can also obtain it by* writing to the Free Software Foundation, Inc., 59 Temple Place,* Suite 330, Boston, MA 02111-1307 USA.*//* This module contains support for S-style generic *//* functions and "class" support. Gag, barf ... */#ifdef HAVE_CONFIG_H#include <config.h>#endif#include "Defn.h"#include <R_ext/RS.h> /* for Calloc, Realloc */static SEXP GetObject(RCNTXT *cptr){SEXP s, sysp, b, formals, funcall, tag;sysp = R_GlobalContext->sysparent;PROTECT(funcall = R_syscall(0, cptr));if ( TYPEOF(CAR(funcall)) == SYMSXP )PROTECT(b = findFun(CAR(funcall), sysp));elsePROTECT(b = eval(CAR(funcall), sysp));/**** use R_sysfunction here insteas */if (TYPEOF(b) != CLOSXP) error("non-closure generic function");formals = FORMALS(b);tag = TAG(formals);if (tag != R_NilValue && tag != R_DotsSymbol) {s = R_NilValue;/** exact matches **/for (b = cptr->promargs ; b != R_NilValue ; b = CDR(b))if (TAG(b) != R_NilValue && pmatch(tag, TAG(b), 1)) {if ( s != R_NilValue)error("formal argument \"%s\" matched by multiple actual arguments", tag);elses = CAR(b);}if ( s == R_NilValue )/** partial matches **/for (b = cptr->promargs ; b != R_NilValue ; b = CDR(b))if (TAG(b) != R_NilValue && pmatch(tag, TAG(b), 0)) {if ( s != R_NilValue)error("formal argument \"%s\" matched by multiple actual arguments", tag);elses = CAR(b);}if ( s == R_NilValue )/** first untagged argument **/for (b = cptr->promargs ; b != R_NilValue ; b = CDR(b))if (TAG(b) == R_NilValue ){s = CAR(b);break;}if ( s == R_NilValue )s = CAR(cptr->promargs);/*error("failed to match argument for dispatch");*/}elses = CAR(cptr->promargs);UNPROTECT(2);if (TYPEOF(s) == PROMSXP) {if (PRVALUE(s) == R_UnboundValue)s = eval(s, R_NilValue);elses = PRVALUE(s);}return(s);}static SEXP applyMethod(SEXP call, SEXP op, SEXP args, SEXP rho, SEXP newrho){SEXP ans;if (TYPEOF(op) == SPECIALSXP) {int save = R_PPStackTop;R_Visible = 1 - PRIMPRINT(op);ans = PRIMFUN(op) (call, op, args, rho);if (save != R_PPStackTop) {Rprintf("stack imbalance in %s, %d then %d\n",PRIMNAME(op), save, R_PPStackTop);}}else if (TYPEOF(op) == BUILTINSXP) {int save = R_PPStackTop;PROTECT(args = evalList(args, rho));R_Visible = 1 - PRIMPRINT(op);ans = PRIMFUN(op) (call, op, args, rho);UNPROTECT(1);if (save != R_PPStackTop) {Rprintf("stack imbalance in %s, %d then %d\n",PRIMNAME(op), save, R_PPStackTop);}}else if (TYPEOF(op) == CLOSXP) {ans = applyClosure(call, op, args, rho, newrho);}elseans = R_NilValue; /* for -Wall */return ans;}/* "newintoold" - a destructive matching of arguments; *//* newargs comes first; any element of oldargs with *//* a name that matches a named newarg is deleted; the *//* two resulting lists are appended and returned. *//* S claims to do this (white book) but doesn't seem to. */static SEXP newintoold(SEXP new, SEXP old){if (new == R_NilValue)return R_NilValue;SETCDR(new, newintoold(CDR(new),old));while (old != R_NilValue) {if (TAG(old) != R_NilValue && TAG(old) == TAG(new)) {SETCAR(old, CAR(new));return CDR(new);}old = CDR(old);}return new;}static SEXP matchmethargs(SEXP oldargs, SEXP newargs){newargs = newintoold(newargs, oldargs);return listAppend(oldargs, newargs);}/* usemethod - calling functions need to evaluate the object* (== 2nd argument). They also need to ensure that the* argument list is set up in the correct manner.** 1. find the context for the calling function (i.e. the generic)* this gives us the unevaluated arguments for the original call** 2. create an environment for evaluating the method and insert* a handful of variables (.Generic, .Class and .Method) into* that environment. Also copy any variables in the env of the* generic that are not formal (or actual) arguments.** 3. fix up the argument list; it should be the arguments to the* generic matched to the formals of the method to be invoked */SEXP R_LookupMethod(SEXP method, SEXP rho, SEXP callrho, SEXP defrho){SEXP val;if (R_UseNamespaceDispatch) {if (TYPEOF(callrho) != ENVSXP && callrho != R_NilValue)error("bad generic call environment");if (TYPEOF(defrho) != ENVSXP && defrho != R_NilValue)error("bad generic definition environment");if (defrho == R_NilValue)defrho = R_BaseNamespace;val = findVar(method, callrho);if (TYPEOF(val)==PROMSXP)val = eval(val, rho);if (isFunction(val))return val;else {SEXP table = findVarInFrame3(defrho,install(".__S3MethodsTable__."),TRUE);if (TYPEOF(table) == PROMSXP)table = eval(table, R_NilValue);if (TYPEOF(table) == ENVSXP) {val = findVarInFrame3(table, method, TRUE);if (TYPEOF(val)==PROMSXP)val = eval(val, rho);if (val != R_UnboundValue)return val;}return R_UnboundValue;}}else {val = findVar(method, rho);if (TYPEOF(val)==PROMSXP)val = eval(val, rho);return val;}}int usemethod(char *generic, SEXP obj, SEXP call, SEXP args,SEXP rho, SEXP callrho, SEXP defrho, SEXP *ans){SEXP class, method, sxp, t, s, matchedarg;SEXP op, formals, newrho, newcall,tmp;char buf[512];int i, j, nclass, matched;RCNTXT *cptr;/* Get the context which UseMethod was called from. */cptr = R_GlobalContext;if ( !(cptr->callflag & CTXT_FUNCTION) || cptr->cloenv != rho)error("UseMethod used in an inappropriate fashion");/* Create a new environment without any *//* of the formals to the generic in it. */PROTECT(newrho = allocSExp(ENVSXP));/*PROTECT(op = findFun(CAR(cptr->call), cptr->sysparent));*/op = CAR(cptr->call);switch (TYPEOF(op)) {case SYMSXP:PROTECT(op = findFun(op, cptr->sysparent));break;case LANGSXP:PROTECT(op = eval(op, cptr->sysparent));break;case CLOSXP:case BUILTINSXP:case SPECIALSXP:PROTECT(op);break;default:error("Invalid generic function in usemethod");}if (TYPEOF(op) == CLOSXP) {formals = FORMALS(op);for (s = FRAME(cptr->cloenv); s != R_NilValue; s = CDR(s)) {matched = 0;for (t = formals; t != R_NilValue; t = CDR(t))if (TAG(t) == TAG(s))matched = 1;if (!matched)defineVar(TAG(s),CAR(s),newrho);}}PROTECT(matchedarg = cptr->promargs);PROTECT(newcall = duplicate(cptr->call));PROTECT(class = R_data_class(obj, FALSE));nclass = length(class);for (i = 0; i < nclass; i++) {if(strlen(generic) + strlen(CHAR(STRING_ELT(class, i))) + 2 > 512)error("class name too long in %s", generic);sprintf(buf, "%s.%s", generic, CHAR(STRING_ELT(class, i)));method = install(buf);sxp = R_LookupMethod(method, rho, callrho, defrho);/* autoloading requires that promises be evaluated <TSL>*/if (TYPEOF(sxp) == PROMSXP){PROTECT(tmp = eval(sxp, rho));sxp = tmp;UNPROTECT(1);}if (isFunction(sxp)) {defineVar(install(".Generic"), mkString(generic), newrho);if (i > 0) {PROTECT(t = allocVector(STRSXP, nclass - i));for (j = 0; j < length(t); j++, i++)SET_STRING_ELT(t, j, STRING_ELT(class, i));setAttrib(t, install("previous"), class);defineVar(install(".Class"), t, newrho);UNPROTECT(1);}elsedefineVar(install(".Class"), class, newrho);PROTECT(t = mkString(buf));defineVar(install(".Method"), t, newrho);UNPROTECT(1);if (R_UseNamespaceDispatch) {defineVar(install(".GenericCallEnv"), callrho, newrho);defineVar(install(".GenericDefEnv"), defrho, newrho);}t = newcall;SETCAR(t, method);R_GlobalContext->callflag = CTXT_GENERIC;*ans = applyMethod(t, sxp, matchedarg, rho, newrho);R_GlobalContext->callflag = CTXT_RETURN;UNPROTECT(5);return 1;}}if(strlen(generic) + strlen("default") + 2 > 512)error("class name too long in %s", generic);sprintf(buf, "%s.default", generic);method = install(buf);sxp = R_LookupMethod(method, rho, callrho, defrho);if (TYPEOF(sxp) == PROMSXP)sxp = eval(sxp, rho);if (isFunction(sxp)) {defineVar(install(".Generic"), mkString(generic), newrho);defineVar(install(".Class"), R_NilValue, newrho);PROTECT(t = mkString(buf));defineVar(install(".Method"), t, newrho);UNPROTECT(1);if (R_UseNamespaceDispatch) {defineVar(install(".GenericCallEnv"), callrho, newrho);defineVar(install(".GenericDefEnv"), defrho, newrho);}t = newcall;SETCAR(t, method);R_GlobalContext->callflag = CTXT_GENERIC;*ans = applyMethod(t, sxp, matchedarg, rho, newrho);R_GlobalContext->callflag = CTXT_RETURN;UNPROTECT(5);return 1;}UNPROTECT(5);cptr->callflag = CTXT_RETURN;return 0;}/* Note: "do_usemethod" is not the only entry point to *//* "usemethod". Things like [ and [[ call usemethod directly, *//* hence do_usemethod should just be an interface to usemethod. */SEXP do_usemethod(SEXP call, SEXP op, SEXP args, SEXP env){SEXP ans, generic, obj;SEXP callenv, defenv;int nargs;RCNTXT *cptr;nargs = length(args);if (nargs < 0)errorcall(call, "corrupt internals!");/* get environments needed for dispatching.callenv = environment from which the generic was calleddefenv = environment where the generic was defined */cptr = R_GlobalContext;if ( !(cptr->callflag & CTXT_FUNCTION) || cptr->cloenv != env)error("UseMethod used in an inappropriate fashion");callenv = cptr->sysparent;defenv = TYPEOF(env) == ENVSXP ? ENCLOS(env) : R_NilValue;if (nargs)PROTECT(generic = eval(CAR(args), env));elsegeneric = R_MissingArg;if (nargs > 2) /* R-lang says there should be a warning */warningcall(call, "Arguments after the first two are ignored");if (nargs >= 2)PROTECT(obj = eval(CADR(args), env));else {cptr = R_GlobalContext;while (cptr != NULL) {if ( (cptr->callflag & CTXT_FUNCTION) && cptr->cloenv == env)break;cptr = cptr->nextcontext;}if (cptr == NULL)error("UseMethod called from outside a closure");if (generic == R_MissingArg)PROTECT(generic = mkString(CHAR(PRINTNAME(CAR(cptr->call)))));PROTECT(obj = GetObject(cptr));}if (TYPEOF(generic) != STRSXP ||LENGTH(generic) < 1 ||strlen(CHAR(STRING_ELT(generic, 0))) == 0)errorcall(call, "first argument must be a generic name");if (usemethod(CHAR(STRING_ELT(generic, 0)), obj, call, CDR(args),env, callenv, defenv, &ans) == 1) {UNPROTECT(1);PROTECT(ans);findcontext(CTXT_RETURN, env, ans);UNPROTECT(1);}elseerror("no applicable method for \"%s\"", CHAR(STRING_ELT(generic, 0)));return R_NilValue; /* NOT Used */}/*fixcall: fixes up the call when arguments to the function mayhave changed; for now we only worry about tagged args, appendingthem if they are not already there*/static SEXP fixcall(SEXP call, SEXP args){SEXP s, t;int found;for( t = args; t != R_NilValue; t=CDR(t) ) {if( TAG(t) != R_NilValue ) {found = 0;for(s=call; CDR(s) != R_NilValue; s=CDR(s))if( TAG(CDR(s)) == TAG(t) )found = 1;if( !found ) {SETCDR(s, allocList(1));SET_TAG(CDR(s), TAG(t));SETCAR(CDR(s), duplicate(CAR(t)));}}}return call;}/* If NextMethod has any arguments the first must be the generic *//* the second the object and any remaining are matched with the *//* formals of the chosen method. */#define ARGUSED(x) LEVELS(x)SEXP do_nextmethod(SEXP call, SEXP op, SEXP args, SEXP env){char buf[512], b[512], bb[512], tbuf[10];SEXP ans, s, t, class, method, matchedarg, generic, nextfun;SEXP sysp, m, formals, actuals, tmp, newcall;SEXP a, group, basename;SEXP callenv, defenv;RCNTXT *cptr;int i,j,cftmp;cptr = R_GlobalContext;cftmp = cptr->callflag;cptr->callflag = CTXT_GENERIC;/* get the env NextMethod was called from */sysp = R_GlobalContext->sysparent;while (cptr != NULL) {if (cptr->callflag & CTXT_FUNCTION && cptr->cloenv == sysp)break;cptr = cptr->nextcontext;}if (cptr == NULL)error("NextMethod called from outside a closure");PROTECT(newcall = duplicate(cptr->call));/* eg get("print.ts")(1) */if (TYPEOF(CAR(cptr->call)) == LANGSXP)error("NextMethod called from anonymous function");/* Find dispatching environments. Promises shouldn't occur, butcheck to be on the safe side. If the variables are not in theenvironment (the method was called outside a method dispatch)then chose reasonable defaults. */if (R_UseNamespaceDispatch) {callenv = findVarInFrame3(R_GlobalContext->sysparent,install(".GenericCallEnv"), TRUE);if (TYPEOF(callenv) == PROMSXP)callenv = eval(callenv, R_NilValue);else if (callenv == R_UnboundValue)callenv = env;defenv = findVarInFrame3(R_GlobalContext->sysparent,install(".GenericDefEnv"), TRUE);if (TYPEOF(defenv) == PROMSXP)defenv = eval(defenv, R_NilValue);else if (defenv == R_UnboundValue)defenv = R_GlobalEnv;}else {callenv = env;defenv = R_GlobalEnv;}/* set up the arglist */s = R_LookupMethod(CAR(cptr->call), env, callenv, defenv);if (TYPEOF(s) == PROMSXP) /* looks like R_LookupMethod just did this */s = eval(s, env);if (TYPEOF(s) == SYMSXP && s == R_UnboundValue)error("No calling generic was found: was a method called directly?");if (TYPEOF(s) != CLOSXP){errorcall(R_NilValue, "function is not a closure, but of type %d",TYPEOF(s));}/* get formals and actuals; attach the names of the formals tothe actuals, expanding any ... that occurs */formals = FORMALS(s);PROTECT(actuals = matchArgs(formals, cptr->promargs));i=0;for(s=formals, t=actuals; s!=R_NilValue; s=CDR(s), t=CDR(t)) {SET_TAG(t, TAG(s));if(TAG(t) == R_DotsSymbol) i=length(CAR(t));}if(i) { /* we need to expand out the dots */PROTECT(t = allocList(i+length(actuals)-1));for( s=actuals, m=t; s!=R_NilValue; s=CDR(s) ) {if(TYPEOF(CAR(s)) == DOTSXP) {i=1;for(a=CAR(s); a!=R_NilValue; a=CDR(a), i++, m=CDR(m) ) {sprintf(tbuf,"..%d",i);SET_TAG(m, mkSYMSXP(mkChar(tbuf), R_UnboundValue));SETCAR(m, CAR(a));}}else {SET_TAG(m, TAG(s));SETCAR(m, CAR(s));m=CDR(m);}}UNPROTECT(1);actuals=t;}PROTECT(actuals);/* we can't duplicate because it would force the promises *//* so we do our own duplication of the promargs */PROTECT(matchedarg = allocList(length(cptr->promargs)));for (t = matchedarg, s = cptr->promargs; t != R_NilValue;s = CDR(s), t=CDR(t)) {SETCAR(t, CAR(s));SET_TAG(t, TAG(s));}for (t = matchedarg; t != R_NilValue; t = CDR(t)) {for (m = actuals; m != R_NilValue; m = CDR(m))if (CAR(m) == CAR(t)) {if (CAR(m) == R_MissingArg) {tmp = findVarInFrame3(cptr->cloenv, TAG(m), TRUE);if (tmp == R_MissingArg)break;}SETCAR(t, mkPROMISE(TAG(m), cptr->cloenv));break;}}/*Now see if there were any other arguments passed inCurrently we seem to only allow named args to changeor to be added, this is at variance with p. 470 of theWhite Book*/s = CADDR(args); /* this is ... and we need to see if it's bound */if (s == R_DotsSymbol) {t = findVarInFrame3(env, s, TRUE);if (t != R_NilValue && t != R_MissingArg) {SET_TYPEOF(t, LISTSXP); /* a safe mutation */s = matchmethargs(matchedarg,t);UNPROTECT(1);PROTECT(matchedarg = s);newcall = fixcall(newcall, matchedarg);}}elseerrorcall(call,"wrong argument ...");/*.Class is used to determine the next method; if it doesn'texist the first argument to the current method is usedthe second argument to NextMethod is another option butisn't currently used).*/class = findVarInFrame3(R_GlobalContext->sysparent,install(".Class"), TRUE);if (class == R_UnboundValue) {s = GetObject(cptr);if (!isObject(s))errorcall(call, "object not specified");class = getAttrib(s, R_ClassSymbol);}/* the generic comes from either the sysparent or it's named */generic = findVarInFrame3(R_GlobalContext->sysparent,install(".Generic"), TRUE);if (generic == R_UnboundValue)generic = eval(CAR(args), env);if( generic == R_NilValue )errorcall(call,"generic function not specified");PROTECT(generic);if (!isString(generic) || length(generic) > 1)errorcall(call,"invalid generic argument to NextMethod");if (strlen(CHAR(STRING_ELT(generic, 0))) == 0)errorcall(call,"generic function not specified");/* determine whether we are in a Group dispatch */group = findVarInFrame3(R_GlobalContext->sysparent,install(".Group"), TRUE);if (group == R_UnboundValue){PROTECT(group = mkString(""));}elsePROTECT(group);if (!isString(group) || length(group) > 1)errorcall(call, "invalid group argument found in NextMethod");/* determine the root: either the group or the generic will be it */if( strlen(CHAR(STRING_ELT(group, 0))) == 0 )basename = generic;elsebasename = group;nextfun = R_NilValue;/* find the method currently being invoked and jump over the current call *//* if t is R_UnboundValue then we called the current method directly */method = findVarInFrame3(R_GlobalContext->sysparent,install(".Method"), TRUE);if( method != R_UnboundValue) {if( !isString(method) )error("Wrong value for .Method");for( i = 0; i < length(method); i++ ) {if(strlen(CHAR(STRING_ELT(method, i))) >= 512)error("method name too long in %s", CHAR(STRING_ELT(method, i)));sprintf(b, "%s", CHAR(STRING_ELT(method, i)));if( strlen(b) )break;}/* for binary operators check that the second argument's methodis the same or absent */for(j = i; j < length(method); j++){if(strlen(CHAR(STRING_ELT(method, j))) >= 512)error("method name too long in %s", CHAR(STRING_ELT(method, j)));sprintf(bb, "%s",CHAR(STRING_ELT(method, j)));if (strlen(bb) && strcmp(b,bb))warning("Incompatible methods ignored");}}else {if(strlen(CHAR(PRINTNAME(CAR(cptr->call)))) >= 512)error("call name too long in %s", CHAR(PRINTNAME(CAR(cptr->call))));sprintf(b, "%s", CHAR(PRINTNAME(CAR(cptr->call))));}for (j = 0; j < length(class); j++) {if(strlen(CHAR(STRING_ELT(basename, 0))) +strlen(CHAR(STRING_ELT(class, j))) + 2 > 512)error("class name too long in %s", CHAR(STRING_ELT(basename, 0)));sprintf(buf, "%s.%s", CHAR(STRING_ELT(basename, 0)),CHAR(STRING_ELT(class, j)));if ( !strcmp(buf, b) )break;}if ( !strcmp(buf,b) ) /* we found a match and start from there */j++;elsej = 0; /*no match so start with the first element of .Class *//* we need the value of i on exit from the for loop to figure outhow many classes to drop. */for (i = j ; i < length(class); i++) {if(strlen(CHAR(STRING_ELT(generic, 0))) +strlen(CHAR(STRING_ELT(class, i))) + 2 > 512)error("class name too long in %s", CHAR(STRING_ELT(generic, 0)));sprintf(buf, "%s.%s", CHAR(STRING_ELT(generic, 0)),CHAR(STRING_ELT(class, i)));nextfun = R_LookupMethod(install(buf), env, callenv, defenv);if (TYPEOF(nextfun) == PROMSXP)nextfun = eval(nextfun, env);if (isFunction(nextfun))break;if (group !=R_UnboundValue){/* if not Generic.foo, look for Group.foo */sprintf(buf, "%s.%s", CHAR(STRING_ELT(basename, 0)),CHAR(STRING_ELT(class, i)));nextfun = R_LookupMethod(install(buf), env, callenv, defenv);if (TYPEOF(nextfun) == PROMSXP)nextfun = eval(nextfun, env);if(isFunction(nextfun))break;}if (isFunction(nextfun))break;}if (!isFunction(nextfun)) {sprintf(buf, "%s.default", CHAR(STRING_ELT(generic, 0)));nextfun = R_LookupMethod(install(buf), env, callenv, defenv);if (TYPEOF(nextfun) == PROMSXP)nextfun = eval(nextfun, env);if (!isFunction(nextfun)) {t = install(CHAR(STRING_ELT(generic, 0)));nextfun = findVar(t,env);if (TYPEOF(nextfun)==PROMSXP)nextfun = eval(nextfun, env);if (!isFunction(nextfun))error("No method to invoke");if (TYPEOF(nextfun) == CLOSXP) {if (INTERNAL(t) != R_NilValue)nextfun = INTERNAL(t);elseerror("No method to invoke");}}}PROTECT(s = allocVector(STRSXP, length(class) - i));PROTECT(class = duplicate(class));PROTECT(m = allocSExp(ENVSXP));for (j = 0; j < length(s); j++)SET_STRING_ELT(s, j, duplicate(STRING_ELT(class, i++)));setAttrib(s, install("previous"), class);defineVar(install(".Class"), s, m);/* for Ops we need `method' to be a vector */PROTECT(method = duplicate(method));for(j = 0; j < length(method); j++){if (strlen(CHAR(STRING_ELT(method,j))))SET_STRING_ELT(method,j, mkChar(buf));}defineVar(install(".Method"), method, m);if (R_UseNamespaceDispatch) {defineVar(install(".GenericCallEnv"), callenv, m);defineVar(install(".GenericDefEnv"), defenv, m);}method = install(buf);defineVar(install(".Generic"), generic, m);defineVar(install(".Group"), group, m);SETCAR(newcall, method);ans = applyMethod(newcall, nextfun, matchedarg, env, m);UNPROTECT(10);return(ans);}SEXP do_unclass(SEXP call, SEXP op, SEXP args, SEXP env){checkArity(op, args);if (isObject(CAR(args))) {SETCAR(args, duplicate(CAR(args)));setAttrib(CAR(args), R_ClassSymbol, R_NilValue);}return CAR(args);}/* ___unused___ InheritsClass() and RemoveClass() */Rboolean InheritsClass(SEXP x, char *name){/* does an object inherit from a class ? */SEXP class;int i, nclass;if (isObject(x)) {class = getAttrib(x, R_ClassSymbol);nclass = length(class);for (i = 0; i < nclass; i++)if (!strcmp(CHAR(STRING_ELT(class, i)), name))return TRUE;}return FALSE;}void RemoveClass(SEXP x, char *name){SEXP class, newclass;int i, j, nclass, nmatch;if (isObject(x)) {PROTECT(x);class = getAttrib(x, R_ClassSymbol);nclass = length(class);nmatch = 0;for (i = 0; i < nclass; i++)if (!strcmp(CHAR(STRING_ELT(class, i)), name))nmatch++;if (nmatch == nclass) {setAttrib(x, R_ClassSymbol, R_NilValue);}else if (nmatch > 0) {PROTECT(newclass = allocVector(STRSXP, nclass-nmatch));for (i = 0, j = 0; i < nclass; i++)if (strcmp(CHAR(STRING_ELT(class, i)), name)) {SET_STRING_ELT(newclass, j++, STRING_ELT(class, i));}setAttrib(x, R_ClassSymbol, newclass);UNPROTECT(1);}UNPROTECT(1);}}SEXP do_inherits(SEXP call, SEXP op, SEXP args, SEXP env){SEXP x, class, what, which, rval = R_NilValue /* -Wall */;int i, j, nwhat, isvec, nclass;checkArity(op, args);x = CAR(args);/* if x isn't an object get out asap *//* if( !isObject(x) )return mkFalse();class = getAttrib(x, R_ClassSymbol);*/class = R_data_class(x, FALSE);nclass = length(class);what = CADR(args);if( !isString(what) )errorcall(call, "what must be a character vector");nwhat = length(what);which = CADDR(args);if( !isLogical(which) || (length(which) != 1) )errorcall(call, "which must be a length 1 logical vector");isvec = asLogical(which);if( isvec )rval = allocVector(INTSXP, nwhat);for(j=0; j<nwhat; j++) {for(i=0; i<nclass; i++) {if( isvec )INTEGER(rval)[j] = 0;if(!strcmp(CHAR(STRING_ELT(class,i)), CHAR(STRING_ELT(what,j)))) {if(isvec)INTEGER(rval)[j] = i+1;elsereturn mkTrue();break;}}}if( !isvec )return mkFalse();return rval;}/* standardGeneric: uses a pointer to R_standardGeneric, to beinitialized when the methods package is attached. When and if themethods code is automatically included, the pointer will not beneeded*/static R_stdGen_ptr_t R_standardGeneric_ptr = 0;static SEXP dispatchNonGeneric(SEXP name, SEXP env, SEXP fdef);#define NOT_METHODS_DISPATCH_PTR(ptr) (ptr == 0 || ptr == dispatchNonGeneric)R_stdGen_ptr_t R_get_standardGeneric_ptr(){return R_standardGeneric_ptr;}R_stdGen_ptr_t R_set_standardGeneric_ptr(R_stdGen_ptr_t val, SEXP envir){R_stdGen_ptr_t old = R_standardGeneric_ptr;R_standardGeneric_ptr = val;if(envir && !isNull(envir))R_MethodsNamespace = envir;/* just in case ... */if(!R_MethodsNamespace)R_MethodsNamespace = R_GlobalEnv;return old;}SEXP R_isMethodsDispatchOn(SEXP onOff) {SEXP value = allocVector(LGLSXP, 1);Rboolean onOffValue;R_stdGen_ptr_t old = R_get_standardGeneric_ptr();LOGICAL(value)[0] = !NOT_METHODS_DISPATCH_PTR(old);if(length(onOff) > 0) {onOffValue = asLogical(onOff);if(onOffValue == FALSE)R_set_standardGeneric_ptr(0, 0);else if(NOT_METHODS_DISPATCH_PTR(old)) {SEXP call;PROTECT(call = allocList(2));SETCAR(call, install("initMethodsDispatch"));eval(call, R_GlobalEnv); /* only works withmethods attached */UNPROTECT(1);}}return value;}/* simpler version for internal use */Rboolean isMethodsDispatchOn(void){return !NOT_METHODS_DISPATCH_PTR(R_standardGeneric_ptr);}static SEXP dispatchNonGeneric(SEXP name, SEXP env, SEXP fdef){/* dispatch the non-generic definition of `name'. Used to trapcalls to standardGeneric during the loading of the methods package */SEXP e, value, rho, fun, symbol, dot_Generic;RCNTXT *cptr;/* find a non-generic function */symbol = install(CHAR(asChar(name)));dot_Generic = install(".Generic");for(rho = ENCLOS(env); rho != R_NilValue && isEnvironment(rho);rho = ENCLOS(rho)) {fun = findVarInFrame3(rho, symbol, TRUE);if(fun == R_UnboundValue) continue;switch(TYPEOF(fun)) {case BUILTINSXP: case SPECIALSXP: break;case CLOSXP:value = findVarInFrame3(CLOENV(fun), dot_Generic, TRUE);if(value == R_UnboundValue) break;/*in all other cases, go on to the parent environment */}fun = R_UnboundValue;}fun = SYMVALUE(symbol);if(fun == R_UnboundValue)error("Unable to find a non-generic version of function \"%s\"",CHAR(asChar(name)));cptr = R_GlobalContext;/* check this is the right context */while (cptr != R_ToplevelContext) {if (cptr->callflag & CTXT_FUNCTION )if (cptr->cloenv == env)break;cptr = cptr->nextcontext;}PROTECT(e = duplicate(R_syscall(0, cptr)));SETCAR(e, fun);/* evaluate a call the non-generic with the same arguments and fromthe same environment as the call to the generic version */value = eval(e, cptr->sysparent);UNPROTECT(1);return value;}#ifdef UNUSEDstatic void load_methods_package(){SEXP e;R_set_standardGeneric_ptr(dispatchNonGeneric, NULL);PROTECT(e = allocVector(LANGSXP, 2));SETCAR(e, install("library"));SETCAR(CDR(e), install("methods"));eval(e, R_GlobalEnv);UNPROTECT(1);}#endifstatic SEXP get_this_generic(SEXP args);SEXP do_standardGeneric(SEXP call, SEXP op, SEXP args, SEXP env){SEXP arg, value, fdef; R_stdGen_ptr_t ptr = R_get_standardGeneric_ptr();if(!ptr) {warning("standardGeneric called without methods dispatch enabled (will be ignored)");R_set_standardGeneric_ptr(dispatchNonGeneric, NULL);ptr = R_get_standardGeneric_ptr();}PROTECT(args);PROTECT(arg = CAR(args));if(!isValidStringF(arg))error("Argument to standardGeneric must be a non-empty character string");PROTECT(fdef = get_this_generic(args));if(isNull(fdef))error("Call to standardGeneric(\"%s\") apparently not from the body of that generic function", CHAR(STRING_ELT(arg, 0)));value = (*ptr)(arg, env, fdef);UNPROTECT(3);return value;}static int maxMethodsOffset = 0, curMaxOffset;typedef enum {NO_METHODS, NEEDS_RESET, HAS_METHODS, SUPPRESSED} prim_methods_t;static prim_methods_t *prim_methods;static SEXP *prim_generics;static SEXP *prim_mlist;#define DEFAULT_N_PRIM_METHODS 100SEXP R_set_prim_method(SEXP fname, SEXP op, SEXP code_vec, SEXP fundef,SEXP mlist){char *code_string;if(!isValidString(code_vec))error("Argument \"code\" must be a character string");code_string = CHAR(asChar(code_vec));do_set_prim_method(op, code_string, fundef, mlist);return(fname);}SEXP R_primitive_methods(SEXP op){int offset = PRIMOFFSET(op);if(offset < 0 || offset > curMaxOffset)return R_NilValue;else {SEXP value = prim_mlist[offset];return value ? value : R_NilValue;}}SEXP do_set_prim_method(SEXP op, char *code_string, SEXP fundef, SEXP mlist){int offset = 0;prim_methods_t code = NO_METHODS; /* -Wall */SEXP value;Rboolean errorcase = FALSE;switch(code_string[0]) {case 'c': /* clear */code = NO_METHODS; break;case 'r': /* reset */code = NEEDS_RESET; break;case 's': /* set or suppress */switch(code_string[1]) {case 'e': code = HAS_METHODS; break;case 'u': code = SUPPRESSED; break;default: errorcase = TRUE;}break;default:errorcase = TRUE;}if(errorcase) {error("Invalid primitive methods code (\"%s\"): should be \"clear\", \"reset\", \"set\", or \"suppress\"", code_string);return R_NilValue;}switch(TYPEOF(op)) {case BUILTINSXP: case SPECIALSXP:offset = PRIMOFFSET(op);break;default:error("Invalid object: must be a primitive function");}if(offset >= maxMethodsOffset) {int n;n = offset + 1;if(n < DEFAULT_N_PRIM_METHODS)n = DEFAULT_N_PRIM_METHODS;if(n < 2*maxMethodsOffset)n = 2 * maxMethodsOffset;if(prim_methods) {int i;prim_methods = Realloc(prim_methods, n, prim_methods_t);prim_generics = Realloc(prim_generics, n, SEXP);prim_mlist = Realloc(prim_mlist, n, SEXP);/* Realloc does not clear the added memory, hence: */for (i = maxMethodsOffset ; i < n ; i++) {prim_methods[i] = NO_METHODS;prim_generics[i] = NULL;prim_mlist[i] = NULL;}}else {prim_methods = Calloc(n, prim_methods_t);prim_generics = Calloc(n, SEXP);prim_mlist = Calloc(n, SEXP);}maxMethodsOffset = n;}if(offset > curMaxOffset)curMaxOffset = offset;prim_methods[offset] = code;/* store a preserved pointer to the generic function if there is notone there currently. Unpreserve it if no more methods, but don'treplace it otherwise: the generic definition is not allowed tochange while it's still defined! (the stored methods list can,however) */value = prim_generics[offset];if(code == SUPPRESSED) {} /* leave the structure alone */else if(code == NO_METHODS && prim_generics[offset]) {R_ReleaseObject(prim_generics[offset]);prim_generics[offset] = 0;prim_mlist[offset] = 0;}else if(fundef && !isNull(fundef) && !prim_generics[offset]) {if(TYPEOF(fundef) != CLOSXP)error("The formal definition of a primitive generic must be a function object (got type %s)",type2str(TYPEOF(fundef)));R_PreserveObject(fundef);prim_generics[offset] = fundef;}if(code==HAS_METHODS) {if(!mlist || isNull(mlist)) {/* turning methods back on after a SUPPRESSED */}else {if(prim_mlist[offset])R_ReleaseObject(prim_mlist[offset]);R_PreserveObject(mlist);prim_mlist[offset] = mlist;}}return value;}static SEXP get_primitive_methods(SEXP op, SEXP rho){SEXP f, e;int nprotect = 0;f = PROTECT(allocVector(STRSXP, 1)); nprotect++;SET_STRING_ELT(f, 0, mkChar(PRIMNAME(op)));PROTECT(e = allocVector(LANGSXP, 2)); nprotect++;SETCAR(e, install("getMethods"));SETCAR(CDR(e), f);e = eval(e, rho);UNPROTECT(nprotect);return e;}/* get the generic function, defined to be the function definition forthe call to standardGeneric(), or for primitives, passed as the secondargument to standardGeneric.*/static SEXP get_this_generic(SEXP args){SEXP value = R_NilValue; static SEXP gen_name;int i, n;RCNTXT *cptr; char *fname;/* a second argument to the call, if any, is taken as the function */if(CDR(args) != R_NilValue)return CAR(CDR(args));/* else use sys.function (this is fairly expensive-- would be good* to force a second argument if possible) */PROTECT(args);if(!gen_name)gen_name = install("generic");cptr = R_GlobalContext;fname = CHAR(asChar(CAR(args)));n = framedepth(cptr);/* check for a matching "generic" slot */for(i=0; i<n; i++) {SEXP rval = R_sysfunction(i, cptr);if(isObject(rval)) {SEXP generic = getAttrib(rval, gen_name);if(TYPEOF(generic) == STRSXP &&!strcmp(CHAR(asChar(generic)), fname)) {value = rval;break;}}}UNPROTECT(1);return(value);}/* Could there be methods for this op? Checksonly whether methods are currently being dispatched and, if so,whether methods are currently defined for this op. */Rboolean R_has_methods(SEXP op){R_stdGen_ptr_t ptr = R_get_standardGeneric_ptr(); int offset;if(NOT_METHODS_DISPATCH_PTR(ptr))return(FALSE);if(!op || TYPEOF(op) == CLOSXP) /* except for primitives, just test for the package */return(TRUE);offset = PRIMOFFSET(op);if(offset > curMaxOffset || prim_methods[offset] == NO_METHODS|| prim_methods[offset] == SUPPRESSED)return(FALSE);return(TRUE);}static SEXP deferred_default_object;SEXP R_deferred_default_method(){if(!deferred_default_object)deferred_default_object = install("__Deferred_Default_Marker__");return(deferred_default_object);}static R_stdGen_ptr_t quick_method_check_ptr = NULL;void R_set_quick_method_check(R_stdGen_ptr_t value){quick_method_check_ptr = value;}/* try to dispatch the formal method for this primitive op, by callingthe stored generic function corresponding to the op. Requires thatthe methods be set up to return a special object rather than tryingto evaluate the default (which would get us into a loop). */SEXP R_possible_dispatch(SEXP call, SEXP op, SEXP args, SEXP rho){SEXP fundef, value, mlist=R_NilValue;int offset;prim_methods_t current;offset = PRIMOFFSET(op);if(offset < 0 || offset > curMaxOffset)error("Invalid primitive operation given for dispatch");current = prim_methods[offset];if(current == NO_METHODS || current == SUPPRESSED)return(NULL);/* check that the methods for this function have been set */if(current == NEEDS_RESET) {/* get the methods and store them in the in-core primitivemethod table. The entries will be preserved viaR_preserveobject, so later we can just grab mlist fromprim_mlist */do_set_prim_method(op, "suppressed", R_NilValue, mlist);PROTECT(mlist = get_primitive_methods(op, rho));do_set_prim_method(op, "set", R_NilValue, mlist);current = prim_methods[offset]; /* as revised by do_set_prim_method */UNPROTECT(1);}mlist = prim_mlist[offset];if(mlist && !isNull(mlist)&& quick_method_check_ptr) {value = (*quick_method_check_ptr)(args, mlist, op);if(isPrimitive(value))return(NULL);if(isFunction(value))/* found a method, call it */return applyClosure(call, value, args, rho, R_NilValue);/* else, need to perform full method search */}fundef = prim_generics[offset];if(!fundef || TYPEOF(fundef) != CLOSXP)error("primitive function \"%s\" has been set for methods but no generic function supplied",PRIMNAME(op));/* To do: arrange for the setting to be restored in case of anerror in method search */value = applyClosure(call, fundef, args, rho, R_NilValue);prim_methods[offset] = current;if(value == deferred_default_object)return NULL;elsereturn value;}SEXP R_do_MAKE_CLASS( char *what){static SEXP s_getClass = NULL;SEXP e, call;if(!what)error("C level MAKE_CLASS macro called with NULL string pointer");if(!s_getClass)s_getClass = Rf_install("getClass");PROTECT(call = allocVector(LANGSXP, 2));SETCAR(call, s_getClass);SETCAR(CDR(call), mkString(what));e = eval(call, R_GlobalEnv);UNPROTECT(1);return(e);}SEXP R_do_new_object(SEXP class_def){static SEXP s_virtual = NULL, s_prototype, s_className;SEXP e, value;if(!s_virtual) {s_virtual = Rf_install("virtual");s_prototype = Rf_install("prototype");s_className = Rf_install("className");}if(!class_def)error("C level NEW macro called with null class definition pointer");e = R_do_slot(class_def, s_virtual);if(asLogical(e) != 0) { /* includes NA, TRUE, or anything other than FALSE */e = R_do_slot(class_def, s_className);error("Trying to generate an object in C from a virtual class (\"%s\")",CHAR(asChar(e)));}e = R_do_slot(class_def, s_className);value = duplicate(R_do_slot(class_def, s_prototype));setAttrib(value, R_ClassSymbol, e);return value;}