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* R FAQ: (R-FAQ).               The R statistical system FAQ.
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* R FAQ: (R-FAQ).               The R statistical system FAQ.
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END-INFO-DIR-ENTRY
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END-INFO-DIR-ENTRY
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   R FAQ
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   R FAQ
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Frequently Asked Questions on R
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Frequently Asked Questions on R
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Version 1.8-58 2004-04-06
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Version 1.9-0 2004-04-10
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ISBN 3-900051-01-1
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ISBN 3-900051-01-1
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Kurt Hornik
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Kurt Hornik
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Table of Contents
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Table of Contents
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   If you know about other platforms, please drop us a note.
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   If you know about other platforms, please drop us a note.
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2.3 What is the current version of R?
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2.3 What is the current version of R?
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=====================================
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=====================================
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The current released version is 1.8.1.  Based on this
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The current released version is 1.9.0.  Based on this
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`major.minor.patchlevel' numbering scheme, there are two development
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`major.minor.patchlevel' numbering scheme, there are two development
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versions of R, working towards the next patch (`r-patched') and minor or
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versions of R, working towards the next patch (`r-patched') and minor or
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eventually major (`r-devel') releases of R, respectively.  Version
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eventually major (`r-devel') releases of R, respectively.  Version
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r-patched is for bug fixes mostly.  New features are typically introduced
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r-patched is for bug fixes mostly.  New features are typically introduced
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in r-devel.
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in r-devel.
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======================================
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======================================
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5.1.1 Add-on packages in R
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5.1.1 Add-on packages in R
1193
--------------------------
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--------------------------
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1194
 
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The R distribution comes with the following extra packages:
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The R distribution comes with the following packages:
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*ctest*
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*base*
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     A collection of Classical TESTs, including the Ansari-Bradley,
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     Bartlett, chi-squared, Fisher, Kruskal-Wallis, Kolmogorov-Smirnov, t,
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1200
     and Wilcoxon tests.
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     Base R functions and datasets.
1201
 
1199
 
1202
*eda*
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*graphics*
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     Exploratory Data Analysis.  Currently only contains functions for
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1204
     robust line fitting, and median polish and smoothing.
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     R functions for base graphics.
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1202
 
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*grid*
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*grid*
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     A rewrite of the graphics layout capabilities, plus some support for
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     A rewrite of the graphics layout capabilities, plus some support for
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     interaction.  (Added in R 1.8.0).
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     interaction.
1209
 
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*lqs*
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     Resistant regression and covariance estimation.
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1212
 
1206
 
1213
*methods*
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*methods*
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     Formally defined methods and classes for R objects, plus other
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     Formally defined methods and classes for R objects, plus other
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     programming tools, as described in the Green Book.
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     programming tools, as described in the Green Book.
1216
 
1210
 
1217
*mle*
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1218
     Generic (smooth) likelihood maximization and profiling.  (Added in R
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     1.8.0).
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1220
 
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1221
*modreg*
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     MODern REGression: smoothing and local methods.
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*mva*
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     MultiVariate Analysis.  Currently contains code for principal
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     components, canonical correlations, metric multidimensional scaling,
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     factor analysis, and hierarchical and k-means clustering.
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1228
 
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*nls*
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     Nonlinear regression routines.
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1231
 
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*splines*
1211
*splines*
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     Regression spline functions and classes.
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     Regression spline functions and classes.
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*stepfun*
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*stats*
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     Code for dealing with STEP FUNctions, including empirical cumulative
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     R statistical functions.
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*stats4*
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     distribution functions.
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     Statistical functions using S4 classes.
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*tcltk*
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*tcltk*
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     Interface and language bindings to Tcl/Tk GUI elements.
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     Interface and language bindings to Tcl/Tk GUI elements.
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*tools*
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*tools*
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     Tools for package development and administration.
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     Tools for package development and administration.
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*ts*
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*utils*
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     Time Series.
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     R utility functions.
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   These "base packages" were substantially reorganized in R 1.9.  The
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   In R 1.9, *base* will be split into the four packages *base*,
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former *base* was split into the four packages *base*, *graphics*, *stats*,
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*graphics*, *stats*, and *utils*.  Packages *ctest*, *eda*, *modreg*, *mva*,
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and *utils*.  Packages *ctest*, *eda*, *modreg*, *mva*, *nls*, *stepfun*
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*nls*, *stepfun* and *ts* will be merged into *stats*, package *lqs*
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and *ts* were merged into *stats*, package *lqs* returned to the
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returned to the recommended package *MASS*, and package *mle* moved to
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recommended package *MASS*, and package *mle* moved to *stats4*.
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*stats4*.
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5.1.2 Add-on packages from CRAN
1234
5.1.2 Add-on packages from CRAN
1254
-------------------------------
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-------------------------------
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The following packages are available from the CRAN `src/contrib' area.
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The following packages are available from the CRAN `src/contrib' area.
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*its*
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*its*
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     An S4 class for handling irregular time series.
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     An S4 class for handling irregular time series.
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*kernlab*
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*kernlab*
1976
     Kernel-based machine learning methods including support vector
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     Kernel-based machine learning methods including support vector
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     machines.  (Currently in `1.9.0/Other'.)
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     machines.
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*knnTree*
1960
*knnTree*
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     Construct or predict with k-nearest-neighbor classifiers, using
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     Construct or predict with k-nearest-neighbor classifiers, using
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     cross-validation to select k, choose variables (by forward or
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     cross-validation to select k, choose variables (by forward or
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     backwards selection), and choose scaling (from among no scaling,
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     backwards selection), and choose scaling (from among no scaling,
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     mystuff       My own R functions, nicely packaged but not documented
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     mystuff       My own R functions, nicely packaged but not documented
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3017
     
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     Packages in `/usr/local/lib/R/library':
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     Packages in `/usr/local/lib/R/library':
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3019
     
3039
     KernSmooth    Functions for kernel smoothing for Wand & Jones (1995)
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     KernSmooth    Functions for kernel smoothing for Wand & Jones (1995)
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     MASS          Main Library of Venables and Ripley's MASS
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     MASS          Main Package of Venables and Ripley's MASS
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     base          The R base package
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     base          The R base package
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     boot          Bootstrap R (S-Plus) Functions (Canty)
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     boot          Bootstrap R (S-Plus) Functions (Canty)
3043
     class         Functions for classification
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     class         Functions for Classification
3044
     cluster       Functions for clustering (by Rousseeuw et al.)
3025
     cluster       Functions for clustering (by Rousseeuw et al.)
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     ctest         Classical Tests
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3046
     eda           Exploratory Data Analysis
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3047
     foreign       Read data stored by Minitab, S, SAS, SPSS, Stata, ...
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     foreign       Read data stored by Minitab, S, SAS, SPSS, Stata, ...
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3027
     graphics      The R Graphics Package
3048
     grid          The Grid Graphics Package
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     grid          The Grid Graphics Package
3049
     lattice       Lattice Graphics
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     lattice       Lattice Graphics
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     lqs           Resistant Regression and Covariance Estimation
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3051
     methods       Formal Methods and Classes
3030
     methods       Formal Methods and Classes
3052
     mle           Maximum likelihood estimation
-
 
3053
     mgcv          Multiple smoothing parameter estimation and GAMs by GCV
3031
     mgcv          Multiple smoothing parameter estimation and GAMs by GCV
3054
     modreg        Modern Regression: Smoothing and Local Methods
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3055
     mva           Classical Multivariate Analysis
-
 
3056
     nlme          Linear and nonlinear mixed effects models
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     nlme          Linear and nonlinear mixed effects models
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     nls           Nonlinear regression
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     nnet          Feed-forward neural networks and multinomial log-linear
3033
     nnet          Feed-forward Neural Networks and Multinomial Log-Linear
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                   models
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                   Models
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     rpart         Recursive partitioning
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     rpart         Recursive partitioning
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     spatial       functions for kriging and point pattern analysis
3036
     spatial       Functions for Kriging and Point Pattern Analysis
3062
     splines       Regression Spline Functions and Classes
3037
     splines       Regression Spline Functions and Classes
-
 
3038
     stats         The R Stats Package
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     stepfun       Step Functions, including Empirical Distributions
3039
     stats4        Statistical functions using S4 classes
3064
     survival      Survival analysis, including penalised likelihood
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     survival      Survival analysis, including penalised likelihood
3065
     tcltk         Tcl/Tk Interface
3041
     tcltk         Tcl/Tk Interface
3066
     tools         Tools for Package Development and Administration
3042
     tools         Tools for Package Development
3067
     ts            Time series functions
3043
     utils         The R Utils Package
3068
 
3044
 
3069
   You can "load" the installed package PKG by
3045
   You can "load" the installed package PKG by
3070
 
3046
 
3071
     library(PKG)
3047
     library(PKG)
3072
 
3048