The R Project SVN R-packages

/trunk/nlme
/trunk/nlme/COPYING
/trunk/nlme/ChangeLog
/trunk/nlme/DESCRIPTION
/trunk/nlme/INDEX
/trunk/nlme/NAMESPACE
/trunk/nlme/R
/trunk/nlme/R/VarCorr.R
/trunk/nlme/R/VarCov.R
/trunk/nlme/R/corStruct.R
/trunk/nlme/R/gls.R
/trunk/nlme/R/gnls.R
/trunk/nlme/R/groupedData.R
/trunk/nlme/R/lmList.R
/trunk/nlme/R/lme.R
/trunk/nlme/R/modelStruct.R
/trunk/nlme/R/newFunc.R
/trunk/nlme/R/newGenerics.R
/trunk/nlme/R/newMethods.R
/trunk/nlme/R/nlme.R
/trunk/nlme/R/nlsList.R
/trunk/nlme/R/pdMat.R
/trunk/nlme/R/reStruct.R
/trunk/nlme/R/simulate.R
/trunk/nlme/R/varFunc.R
/trunk/nlme/R/zzMethods.R
/trunk/nlme/README
/trunk/nlme/data
/trunk/nlme/data/00Index
/trunk/nlme/data/Alfalfa.rda
/trunk/nlme/data/Assay.rda
/trunk/nlme/data/BodyWeight.rda
/trunk/nlme/data/Cefamandole.rda
/trunk/nlme/data/Dialyzer.rda
/trunk/nlme/data/Earthquake.rda
/trunk/nlme/data/Fatigue.rda
/trunk/nlme/data/Gasoline.rda
/trunk/nlme/data/Glucose.rda
/trunk/nlme/data/Glucose2.rda
/trunk/nlme/data/Gun.rda
/trunk/nlme/data/IGF.rda
/trunk/nlme/data/Machines.rda
/trunk/nlme/data/MathAchSchool.rda
/trunk/nlme/data/MathAchieve.rda
/trunk/nlme/data/Meat.rda
/trunk/nlme/data/Milk.rda
/trunk/nlme/data/Muscle.rda
/trunk/nlme/data/Nitrendipene.rda
/trunk/nlme/data/Oats.rda
/trunk/nlme/data/Orthodont.rda
/trunk/nlme/data/Ovary.rda
/trunk/nlme/data/Oxboys.rda
/trunk/nlme/data/Oxide.rda
/trunk/nlme/data/PBG.rda
/trunk/nlme/data/Phenobarb.rda
/trunk/nlme/data/Pixel.rda
/trunk/nlme/data/Quinidine.rda
/trunk/nlme/data/Rail.rda
/trunk/nlme/data/RatPupWeight.rda
/trunk/nlme/data/Relaxin.rda
/trunk/nlme/data/Remifentanil.rda
/trunk/nlme/data/Soybean.rda
/trunk/nlme/data/Spruce.rda
/trunk/nlme/data/Tetracycline1.rda
/trunk/nlme/data/Tetracycline2.rda
/trunk/nlme/data/Wafer.rda
/trunk/nlme/data/Wheat.rda
/trunk/nlme/data/Wheat2.rda
/trunk/nlme/data/bdf.rda
/trunk/nlme/data/ergoStool.rda
/trunk/nlme/inst
/trunk/nlme/inst/mlbook
/trunk/nlme/inst/mlbook/README
/trunk/nlme/inst/mlbook/ch04.R
/trunk/nlme/inst/mlbook/ch05.R
/trunk/nlme/inst/scripts
/trunk/nlme/inst/scripts/ch01.R
/trunk/nlme/inst/scripts/ch02.R
/trunk/nlme/inst/scripts/ch03.R
/trunk/nlme/inst/scripts/ch04.R
/trunk/nlme/inst/scripts/ch05.R
/trunk/nlme/inst/scripts/ch06.R
/trunk/nlme/inst/scripts/ch08.R
/trunk/nlme/inst/scripts/sims.rda
/trunk/nlme/install.R
/trunk/nlme/man
/trunk/nlme/man/ACF.Rd
/trunk/nlme/man/ACF.gls.Rd
/trunk/nlme/man/ACF.lme.Rd
/trunk/nlme/man/Alfalfa.Rd
/trunk/nlme/man/Assay.Rd
/trunk/nlme/man/BIC.Rd
/trunk/nlme/man/BIC.logLik.Rd
/trunk/nlme/man/BodyWeight.Rd
/trunk/nlme/man/Cefamandole.Rd
/trunk/nlme/man/Coef.Rd
/trunk/nlme/man/Covariate.Rd
/trunk/nlme/man/Covariate.varFunc.Rd
/trunk/nlme/man/Dialyzer.Rd
/trunk/nlme/man/Dim.Rd
/trunk/nlme/man/Dim.corSpatial.Rd
/trunk/nlme/man/Dim.corStruct.Rd
/trunk/nlme/man/Dim.pdMat.Rd
/trunk/nlme/man/Earthquake.Rd
/trunk/nlme/man/Extract.pdMat.Rd
/trunk/nlme/man/Fatigue.Rd
/trunk/nlme/man/Gasoline.Rd
/trunk/nlme/man/Glucose.Rd
/trunk/nlme/man/Glucose2.Rd
/trunk/nlme/man/Gun.Rd
/trunk/nlme/man/IGF.Rd
/trunk/nlme/man/Initialize.Rd
/trunk/nlme/man/Initialize.corStruct.Rd
/trunk/nlme/man/Initialize.glsStruct.Rd
/trunk/nlme/man/Initialize.lmeStruct.Rd
/trunk/nlme/man/Initialize.reStruct.Rd
/trunk/nlme/man/Initialize.varFunc.Rd
/trunk/nlme/man/LDEsysMat.Rd
/trunk/nlme/man/Machines.Rd
/trunk/nlme/man/MathAchSchool.Rd
/trunk/nlme/man/MathAchieve.Rd
/trunk/nlme/man/Matrix.Rd
/trunk/nlme/man/Matrix.pdMat.Rd
/trunk/nlme/man/Matrix.reStruct.Rd
/trunk/nlme/man/Meat.Rd
/trunk/nlme/man/Milk.Rd
/trunk/nlme/man/Muscle.Rd
/trunk/nlme/man/Names.Rd
/trunk/nlme/man/Names.formula.Rd
/trunk/nlme/man/Names.pdBlocked.Rd
/trunk/nlme/man/Names.pdMat.Rd
/trunk/nlme/man/Names.reStruct.Rd
/trunk/nlme/man/Nitrendipene.Rd
/trunk/nlme/man/Oats.Rd
/trunk/nlme/man/Orthodont.Rd
/trunk/nlme/man/Ovary.Rd
/trunk/nlme/man/Oxboys.Rd
/trunk/nlme/man/Oxide.Rd
/trunk/nlme/man/PBG.Rd
/trunk/nlme/man/Phenobarb.Rd
/trunk/nlme/man/Pixel.Rd
/trunk/nlme/man/Quinidine.Rd
/trunk/nlme/man/Rail.Rd
/trunk/nlme/man/RatPupWeight.Rd
/trunk/nlme/man/Relaxin.Rd
/trunk/nlme/man/Remifentanil.Rd
/trunk/nlme/man/Soybean.Rd
/trunk/nlme/man/Spruce.Rd
/trunk/nlme/man/Tetracycline1.Rd
/trunk/nlme/man/Tetracycline2.Rd
/trunk/nlme/man/VarCorr.Rd
/trunk/nlme/man/Variogram.Rd
/trunk/nlme/man/Variogram.corExp.Rd
/trunk/nlme/man/Variogram.corGaus.Rd
/trunk/nlme/man/Variogram.corLin.Rd
/trunk/nlme/man/Variogram.corRatio.Rd
/trunk/nlme/man/Variogram.corSpatial.Rd
/trunk/nlme/man/Variogram.corSpher.Rd
/trunk/nlme/man/Variogram.default.Rd
/trunk/nlme/man/Variogram.gls.Rd
/trunk/nlme/man/Variogram.lme.Rd
/trunk/nlme/man/Wafer.Rd
/trunk/nlme/man/Wheat.Rd
/trunk/nlme/man/Wheat2.Rd
/trunk/nlme/man/allCoef.Rd
/trunk/nlme/man/anova.gls.Rd
/trunk/nlme/man/anova.lme.Rd
/trunk/nlme/man/as.matrix.corStruct.Rd
/trunk/nlme/man/as.matrix.pdMat.Rd
/trunk/nlme/man/as.matrix.reStruct.Rd
/trunk/nlme/man/asOneFormula.Rd
/trunk/nlme/man/asTable.Rd
/trunk/nlme/man/augPred.Rd
/trunk/nlme/man/balancedGrouped.Rd
/trunk/nlme/man/bdf.Rd
/trunk/nlme/man/coef.corStruct.Rd
/trunk/nlme/man/coef.gnls.Rd
/trunk/nlme/man/coef.lmList.Rd
/trunk/nlme/man/coef.lme.Rd
/trunk/nlme/man/coef.modelStruct.Rd
/trunk/nlme/man/coef.pdMat.Rd
/trunk/nlme/man/coef.reStruct.Rd
/trunk/nlme/man/coef.varFunc.Rd
/trunk/nlme/man/collapse.Rd
/trunk/nlme/man/collapse.groupedData.Rd
/trunk/nlme/man/compareFits.Rd
/trunk/nlme/man/comparePred.Rd
/trunk/nlme/man/contr.SAS.Rd
/trunk/nlme/man/corAR1.Rd
/trunk/nlme/man/corARMA.Rd
/trunk/nlme/man/corCAR1.Rd
/trunk/nlme/man/corClasses.Rd
/trunk/nlme/man/corCompSymm.Rd
/trunk/nlme/man/corExp.Rd
/trunk/nlme/man/corFactor.Rd
/trunk/nlme/man/corFactor.corStruct.Rd
/trunk/nlme/man/corGaus.Rd
/trunk/nlme/man/corLin.Rd
/trunk/nlme/man/corMatrix.Rd
/trunk/nlme/man/corMatrix.corStruct.Rd
/trunk/nlme/man/corMatrix.pdMat.Rd
/trunk/nlme/man/corMatrix.reStruct.Rd
/trunk/nlme/man/corNatural.Rd
/trunk/nlme/man/corRatio.Rd
/trunk/nlme/man/corSpatial.Rd
/trunk/nlme/man/corSpher.Rd
/trunk/nlme/man/corSymm.Rd
/trunk/nlme/man/ergoStool.Rd
/trunk/nlme/man/fdHess.Rd
/trunk/nlme/man/fitted.glsStruct.Rd
/trunk/nlme/man/fitted.gnlsStruct.Rd
/trunk/nlme/man/fitted.lmList.Rd
/trunk/nlme/man/fitted.lme.Rd
/trunk/nlme/man/fitted.lmeStruct.Rd
/trunk/nlme/man/fitted.nlmeStruct.Rd
/trunk/nlme/man/fixed.effects.Rd
/trunk/nlme/man/fixef.lmList.Rd
/trunk/nlme/man/formula.pdBlocked.Rd
/trunk/nlme/man/formula.pdMat.Rd
/trunk/nlme/man/formula.reStruct.Rd
/trunk/nlme/man/gapply.Rd
/trunk/nlme/man/getCovariate.Rd
/trunk/nlme/man/getCovariate.corStruct.Rd
/trunk/nlme/man/getCovariate.data.frame.Rd
/trunk/nlme/man/getCovariate.varFunc.Rd
/trunk/nlme/man/getCovariateFormula.Rd
/trunk/nlme/man/getData.Rd
/trunk/nlme/man/getData.gls.Rd
/trunk/nlme/man/getData.lmList.Rd
/trunk/nlme/man/getData.lme.Rd
/trunk/nlme/man/getGroups.Rd
/trunk/nlme/man/getGroups.corStruct.Rd
/trunk/nlme/man/getGroups.data.frame.Rd
/trunk/nlme/man/getGroups.gls.Rd
/trunk/nlme/man/getGroups.lmList.Rd
/trunk/nlme/man/getGroups.lme.Rd
/trunk/nlme/man/getGroups.varFunc.Rd
/trunk/nlme/man/getGroupsFormula.Rd
/trunk/nlme/man/getResponse.Rd
/trunk/nlme/man/getResponseFormula.Rd
/trunk/nlme/man/getVarCov.Rd
/trunk/nlme/man/gls.Rd
/trunk/nlme/man/glsControl.Rd
/trunk/nlme/man/glsObject.Rd
/trunk/nlme/man/glsStruct.Rd
/trunk/nlme/man/gnls.Rd
/trunk/nlme/man/gnlsControl.Rd
/trunk/nlme/man/gnlsObject.Rd
/trunk/nlme/man/gnlsStruct.Rd
/trunk/nlme/man/groupedData.Rd
/trunk/nlme/man/gsummary.Rd
/trunk/nlme/man/intervals.Rd
/trunk/nlme/man/intervals.gls.Rd
/trunk/nlme/man/intervals.lmList.Rd
/trunk/nlme/man/intervals.lme.Rd
/trunk/nlme/man/isBalanced.Rd
/trunk/nlme/man/isInitialized.Rd
/trunk/nlme/man/lmList.Rd
/trunk/nlme/man/lmList.groupedData.Rd
/trunk/nlme/man/lme.Rd
/trunk/nlme/man/lme.groupedData.Rd
/trunk/nlme/man/lme.lmList.Rd
/trunk/nlme/man/lmeControl.Rd
/trunk/nlme/man/lmeObject.Rd
/trunk/nlme/man/lmeScale.Rd
/trunk/nlme/man/lmeStruct.Rd
/trunk/nlme/man/logDet.Rd
/trunk/nlme/man/logDet.corStruct.Rd
/trunk/nlme/man/logDet.pdMat.Rd
/trunk/nlme/man/logDet.reStruct.Rd
/trunk/nlme/man/logLik.corStruct.Rd
/trunk/nlme/man/logLik.glsStruct.Rd
/trunk/nlme/man/logLik.gnls.Rd
/trunk/nlme/man/logLik.gnlsStruct.Rd
/trunk/nlme/man/logLik.lmList.Rd
/trunk/nlme/man/logLik.lme.Rd
/trunk/nlme/man/logLik.lmeStruct.Rd
/trunk/nlme/man/logLik.reStruct.Rd
/trunk/nlme/man/logLik.varFunc.Rd
/trunk/nlme/man/model.matrix.reStruct.Rd
/trunk/nlme/man/needUpdate.Rd
/trunk/nlme/man/needUpdate.modelStruct.Rd
/trunk/nlme/man/nlme.Rd
/trunk/nlme/man/nlme.nlsList.Rd
/trunk/nlme/man/nlmeControl.Rd
/trunk/nlme/man/nlmeObject.Rd
/trunk/nlme/man/nlmeStruct.Rd
/trunk/nlme/man/nlsList.Rd
/trunk/nlme/man/nlsList.selfStart.Rd
/trunk/nlme/man/pairs.compareFits.Rd
/trunk/nlme/man/pairs.lmList.Rd
/trunk/nlme/man/pairs.lme.Rd
/trunk/nlme/man/pdBlocked.Rd
/trunk/nlme/man/pdClasses.Rd
/trunk/nlme/man/pdCompSymm.Rd
/trunk/nlme/man/pdConstruct.Rd
/trunk/nlme/man/pdConstruct.pdBlocked.Rd
/trunk/nlme/man/pdDiag.Rd
/trunk/nlme/man/pdFactor.Rd
/trunk/nlme/man/pdFactor.reStruct.Rd
/trunk/nlme/man/pdIdent.Rd
/trunk/nlme/man/pdLogChol.Rd
/trunk/nlme/man/pdMat.Rd
/trunk/nlme/man/pdMatrix.Rd
/trunk/nlme/man/pdMatrix.reStruct.Rd
/trunk/nlme/man/pdNatural.Rd
/trunk/nlme/man/pdSymm.Rd
/trunk/nlme/man/phenoModel.Rd
/trunk/nlme/man/plot.ACF.Rd
/trunk/nlme/man/plot.Variogram.Rd
/trunk/nlme/man/plot.augPred.Rd
/trunk/nlme/man/plot.compareFits.Rd
/trunk/nlme/man/plot.gls.Rd
/trunk/nlme/man/plot.intervals.lmList.Rd
/trunk/nlme/man/plot.lmList.Rd
/trunk/nlme/man/plot.lme.Rd
/trunk/nlme/man/plot.nffGroupedData.Rd
/trunk/nlme/man/plot.nfnGroupedData.Rd
/trunk/nlme/man/plot.nmGroupedData.Rd
/trunk/nlme/man/plot.ranef.lmList.Rd
/trunk/nlme/man/plot.ranef.lme.Rd
/trunk/nlme/man/pooledSD.Rd
/trunk/nlme/man/predict.gls.Rd
/trunk/nlme/man/predict.gnls.Rd
/trunk/nlme/man/predict.lmList.Rd
/trunk/nlme/man/predict.lme.Rd
/trunk/nlme/man/predict.nlme.Rd
/trunk/nlme/man/print.summary.pdMat.Rd
/trunk/nlme/man/print.varFunc.Rd
/trunk/nlme/man/qqnorm.gls.Rd
/trunk/nlme/man/qqnorm.lme.Rd
/trunk/nlme/man/quinModel.Rd
/trunk/nlme/man/random.effects.Rd
/trunk/nlme/man/ranef.lmList.Rd
/trunk/nlme/man/ranef.lme.Rd
/trunk/nlme/man/reStruct.Rd
/trunk/nlme/man/recalc.Rd
/trunk/nlme/man/recalc.corStruct.Rd
/trunk/nlme/man/recalc.modelStruct.Rd
/trunk/nlme/man/recalc.reStruct.Rd
/trunk/nlme/man/recalc.varFunc.Rd
/trunk/nlme/man/residuals.gls.Rd
/trunk/nlme/man/residuals.glsStruct.Rd
/trunk/nlme/man/residuals.gnlsStruct.Rd
/trunk/nlme/man/residuals.lmList.Rd
/trunk/nlme/man/residuals.lme.Rd
/trunk/nlme/man/residuals.lmeStruct.Rd
/trunk/nlme/man/residuals.nlmeStruct.Rd
/trunk/nlme/man/simulate.lme.Rd
/trunk/nlme/man/solve.pdMat.Rd
/trunk/nlme/man/solve.reStruct.Rd
/trunk/nlme/man/splitFormula.Rd
/trunk/nlme/man/summary.corStruct.Rd
/trunk/nlme/man/summary.gls.Rd
/trunk/nlme/man/summary.lmList.Rd
/trunk/nlme/man/summary.lme.Rd
/trunk/nlme/man/summary.modelStruct.Rd
/trunk/nlme/man/summary.nlsList.Rd
/trunk/nlme/man/summary.pdMat.Rd
/trunk/nlme/man/summary.varFunc.Rd
/trunk/nlme/man/update.modelStruct.Rd
/trunk/nlme/man/update.varFunc.Rd
/trunk/nlme/man/varClasses.Rd
/trunk/nlme/man/varComb.Rd
/trunk/nlme/man/varConstPower.Rd
/trunk/nlme/man/varExp.Rd
/trunk/nlme/man/varFixed.Rd
/trunk/nlme/man/varFunc.Rd
/trunk/nlme/man/varIdent.Rd
/trunk/nlme/man/varPower.Rd
/trunk/nlme/man/varWeights.Rd
/trunk/nlme/man/varWeights.glsStruct.Rd
/trunk/nlme/man/varWeights.lmeStruct.Rd
/trunk/nlme/src
/trunk/nlme/src/base.h
/trunk/nlme/src/corStruct.c
/trunk/nlme/src/gnls.c
/trunk/nlme/src/matrix.c
/trunk/nlme/src/matrix.h
/trunk/nlme/src/nlOptimizer.c
/trunk/nlme/src/nlOptimizer.h
/trunk/nlme/src/nlme.c
/trunk/nlme/src/nlmefit.c
/trunk/nlme/src/nlmefit.h
/trunk/nlme/src/nls.c
/trunk/nlme/src/pdMat.c
/trunk/nlme/src/pdMat.h
/trunk/nlme/tests
/trunk/nlme/tests/augPredmissing.R
/trunk/nlme/tests/data.frame.R
/trunk/nlme/tests/deparse.R
/trunk/nlme/tests/lme.R
/trunk/nlme/tests/lme.Rout.save
/trunk/nlme/tests/nlme.R
/trunk/nlme/tests/nlme.Rout.save
/trunk/nlme/tests/update.R
/trunk/nlme/tests/updateLme.R