R-packages – /trunk/nlme/ChangeLog

Rev 8613 – New release.

hornik — Wed, 15 Jul 2026 12:14:32 +0000

hornik – 2 file(s) modified
New release.

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION

Rev 8597 – remove 'SASmixed' (archived), embedding data(PBIB) in the reproduction script

smeyer — Fri, 24 Apr 2026 11:33:05 +0000

smeyer – 4 file(s) modified
remove 'SASmixed' (archived), embedding data(PBIB) in the reproduction script

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/nlme/inst/scripts/ch02.R
~ /trunk/nlme/tests/extras/scripts.Rout.save

Rev 8593 – bump version

smeyer — Fri, 27 Mar 2026 15:00:02 +0000

smeyer – 2 file(s) modified
bump version

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION

Rev 8592 – fix error message for missing start values

smeyer — Fri, 27 Mar 2026 14:40:48 +0000

smeyer – 3 file(s) modified
fix error message for missing start values

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/gnls.Rd
~ /trunk/nlme/R/gnls.R

Rev 8591 – change start values for compatibility with OpenBLAS on aarch64

smeyer — Fri, 27 Mar 2026 14:23:13 +0000

smeyer – 2 file(s) modified
change start values for compatibility with OpenBLAS on aarch64

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/tests/gls.R

Rev 8582 – increase (empirical) tolerance

smeyer — Fri, 06 Feb 2026 08:10:49 +0000

smeyer – 2 file(s) modified
increase (empirical) tolerance

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/tests/anova.gls.R

Rev 8521 – prepare for release

ripley — Mon, 31 Mar 2025 11:17:34 +0000

ripley – 19 file(s) modified
prepare for release

~ /trunk/foreign/ChangeLog
~ /trunk/foreign/DESCRIPTION
~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/XML/ChangeLog
~ /trunk/XML/man/catalogResolve.Rd
~ /trunk/XML/man/catalogs.Rd
~ /trunk/XML/man/getNodeSet.Rd
~ /trunk/XML/man/names.XMLNode.Rd
~ /trunk/XML/man/toString.Rd
~ /trunk/XML/man/xmlApply.Rd
~ /trunk/XML/man/xmlContainsEntity.Rd
~ /trunk/XML/man/xmlDOMApply.Rd
~ /trunk/XML/man/xmlEventHandler.Rd
~ /trunk/XML/man/xmlGetAttr.Rd
~ /trunk/XML/man/xmlName.Rd
~ /trunk/XML/man/xmlNamespace.Rd
~ /trunk/XML/man/xmlOutput.Rd
~ /trunk/XML/man/xmlTreeParse.Rd

Rev 8495 – log the release

smeyer — Tue, 28 Jan 2025 11:30:13 +0000

smeyer – 1 file(s) modified
log the release

~ /trunk/nlme/ChangeLog

Rev 8447 – fix print.summary.corNatural()

smeyer — Thu, 22 Aug 2024 21:15:18 +0000

smeyer – 3 file(s) modified
fix print.summary.corNatural()

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/corNatural.Rd
~ /trunk/nlme/R/corStruct.R

Rev 8444 – guard 'optif9' against non-finite 'internal_loglik' (PR#17955, PR#18433)

smeyer — Wed, 21 Aug 2024 22:43:07 +0000

smeyer – 3 file(s) modified
guard 'optif9' against non-finite 'internal_loglik' (PR#17955, PR#18433)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/src/nlmefit.c
~ /trunk/nlme/tests/predict.lme.R

Rev 8441 – c8439 indeed also fixes gnls() crashes (PR#17227)

smeyer — Sun, 18 Aug 2024 17:29:32 +0000

smeyer – 1 file(s) modified
c8439 indeed also fixes gnls() crashes (PR#17227)

~ /trunk/nlme/ChangeLog

Rev 8439 – fix crashes from nlme() with spatial correlation (PR#18192)

smeyer — Fri, 16 Aug 2024 16:46:18 +0000

smeyer – 3 file(s) modified
fix crashes from nlme() with spatial correlation (PR#18192)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/src/corStruct.c
~ /trunk/nlme/tests/nlme.R

Rev 8437 – test corMatrix() with spatial correlation and groups (previously not covered ...

smeyer — Fri, 16 Aug 2024 14:32:14 +0000

smeyer – 3 file(s) modified
test corMatrix() with spatial correlation *and* groups (previously not covered by examples or tests)

~ /trunk/nlme/ChangeLog
x /trunk/nlme/tests/corFactor.R
+ /trunk/nlme/tests/corMatrix.R (copied from /trunk/nlme/tests/corFactor.R@8436)

Rev 8434 – New release.

hornik — Wed, 14 Aug 2024 06:35:58 +0000

hornik – 2 file(s) modified
New release.

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION

Rev 8432 – catch invalid p and q values when initializing "corARMA" (PR#18777)

smeyer — Mon, 12 Aug 2024 16:05:29 +0000

smeyer – 3 file(s) modified
catch invalid p and q values when initializing "corARMA" (PR#18777)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/corStruct.R
+ /trunk/nlme/tests/corStruct.R

Rev 8418 – use 'MASS' conditionally in tests

smeyer — Tue, 18 Jun 2024 08:44:46 +0000

smeyer – 4 file(s) modified
use 'MASS' conditionally in tests

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/tests/deviance.R
~ /trunk/nlme/tests/nlme.R
~ /trunk/nlme/tests/updateLme.R

Rev 8417 – Add package anchors for Rd xrefs to targets in package ...

hornik — Sun, 16 Jun 2024 15:16:20 +0000

hornik – 11 file(s) modified
Add package anchors for Rd xrefs to targets in package 'lattice'.

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/pairs.compareFits.Rd
~ /trunk/nlme/man/pairs.lme.Rd
~ /trunk/nlme/man/pairs.lmList.Rd
~ /trunk/nlme/man/plot.ACF.Rd
~ /trunk/nlme/man/plot.augPred.Rd
~ /trunk/nlme/man/plot.gls.Rd
~ /trunk/nlme/man/plot.lme.Rd
~ /trunk/nlme/man/plot.lmList.Rd
~ /trunk/nlme/man/plot.nfnGroupedData.Rd
~ /trunk/nlme/man/plot.Variogram.Rd

Rev 8415 – no need for \donttest

smeyer — Thu, 06 Jun 2024 14:00:02 +0000

smeyer – 3 file(s) modified
no need for \donttest

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/simulate.lme.Rd
~ /trunk/nlme/man/summary.lme.Rd

Rev 8405 – sQuote(q=FALSE) in str.pdMat() needs R >= 3.6.0

smeyer — Wed, 05 Jun 2024 08:08:12 +0000

smeyer – 2 file(s) modified
sQuote(q=FALSE) in str.pdMat() needs R >= 3.6.0

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION

Rev 8404 – spelling/markup

smeyer — Tue, 04 Jun 2024 13:39:02 +0000

smeyer – 7 file(s) modified
spelling/markup

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/asTable.Rd
~ /trunk/nlme/man/formula.pdMat.Rd
~ /trunk/nlme/man/formula.reStruct.Rd
~ /trunk/nlme/man/groupedData.Rd
~ /trunk/nlme/man/lmeControl.Rd
~ /trunk/nlme/man/nlsList.selfStart.Rd

Rev 8382 – fix another scoping issue in nlme.nlsList()

smeyer — Mon, 29 Apr 2024 12:21:17 +0000

smeyer – 5 file(s) modified
fix another scoping issue in nlme.nlsList()

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/lmList.R
~ /trunk/nlme/R/nlme.R
~ /trunk/nlme/R/nlsList.R
~ /trunk/nlme/tests/scoping.R

Rev 8379 – catch corARMA() with p=0=q (PR#17988)

smeyer — Sun, 28 Apr 2024 19:22:08 +0000

smeyer – 4 file(s) modified
catch corARMA() with p=0=q (PR#17988)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/corARMA.Rd
~ /trunk/nlme/R/corStruct.R
~ /trunk/nlme/tests/gls.R

Rev 8374 – fix gls-part of PR#16806

smeyer — Tue, 23 Apr 2024 14:53:00 +0000

smeyer – 3 file(s) modified
fix gls-part of PR#16806

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/VarCov.R
~ /trunk/nlme/tests/getVarCov.R

Rev 8373 – fix lme-part of PR#16806

smeyer — Tue, 23 Apr 2024 14:08:51 +0000

smeyer – 3 file(s) modified
fix lme-part of PR#16806

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/VarCov.R
~ /trunk/nlme/tests/getVarCov.R

Rev 8363 – warn about misguided varIdent(~1|g)

smeyer — Fri, 19 Apr 2024 11:16:34 +0000

smeyer – 2 file(s) modified
warn about misguided varIdent(~1|g)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/varFunc.R

Rev 8361 – fix nlme() for fixed variance weights (PR#17712)

smeyer — Thu, 18 Apr 2024 22:02:50 +0000

smeyer – 3 file(s) modified
fix nlme() for fixed variance weights (PR#17712)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/nlme.R
+ /trunk/nlme/tests/varFixed.R

Rev 8359 – fix another scoping issue

smeyer — Wed, 17 Apr 2024 14:27:20 +0000

smeyer – 3 file(s) modified
fix another scoping issue

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/lme.R
~ /trunk/nlme/tests/scoping.R

Rev 8313 – rm dependency; simplif

maechler — Fri, 08 Dec 2023 10:46:20 +0000

maechler – 4 file(s) modified
rm dependency; simplif

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/nlme/src/nlmefit.c
~ /trunk/nlme/tests/augPred_lab.R

Rev 8259 – typo

smeyer — Tue, 01 Aug 2023 10:03:36 +0000

smeyer – 1 file(s) modified
typo

~ /trunk/nlme/ChangeLog

Rev 8256 – save formula in nlme() & gnls(); fixing PR#18559

maechler — Mon, 31 Jul 2023 15:20:21 +0000

maechler – 5 file(s) modified
save formula in nlme() & gnls(); fixing PR#18559

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/nlme/R/gnls.R
~ /trunk/nlme/R/nlme.R
~ /trunk/nlme/tests/scoping.R

Rev 8218 – loosen all.equal(tol=.)

maechler — Sat, 08 Apr 2023 07:41:55 +0000

maechler – 3 file(s) modified
loosen all.equal(tol=.)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/nlme/tests/sigma-fixed-etc.R

Rev 8186 – tweaks

smeyer — Mon, 30 Jan 2023 14:42:03 +0000

smeyer – 3 file(s) modified
tweaks

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/man/nlme-deprecated.Rd
~ /trunk/nlme/tests/data.frame.R

Rev 8184 – deprecate corIdent(); new Version: 3.1-162

maechler — Sat, 28 Jan 2023 21:18:37 +0000

maechler – 12 file(s) modified
deprecate corIdent(); new Version: 3.1-162

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/nlme/man/coef.corStruct.Rd
~ /trunk/nlme/man/corClasses.Rd
~ /trunk/nlme/man/corMatrix.corStruct.Rd
~ /trunk/nlme/man/Initialize.corStruct.Rd
~ /trunk/nlme/man/logDet.corStruct.Rd
~ /trunk/nlme/man/nlme-deprecated.Rd
~ /trunk/nlme/man/recalc.corStruct.Rd
~ /trunk/nlme/man/summary.corStruct.Rd
~ /trunk/nlme/NAMESPACE
~ /trunk/nlme/R/corStruct.R

Rev 8183 – fix PR#18438

smeyer — Thu, 26 Jan 2023 21:01:20 +0000

smeyer – 2 file(s) modified
fix PR#18438

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/src/matrix.h

Rev 8180 – suppress spurious warning from example(balancedGrouped)

smeyer — Mon, 23 Jan 2023 15:42:45 +0000

smeyer – 2 file(s) modified
suppress spurious warning from example(balancedGrouped)

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/groupedData.R

Rev 8179 – fix deprecation logic of n[fm]GroupedData

smeyer — Mon, 23 Jan 2023 15:02:21 +0000

smeyer – 3 file(s) modified
fix deprecation logic of n[fm]GroupedData

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/R/groupedData.R
~ /trunk/nlme/tests/data.frame.R

Rev 8161 – provide str.pdMat() [V++ => 3.1.161]

maechler — Thu, 17 Nov 2022 15:24:50 +0000

maechler – 6 file(s) modified
provide str.pdMat() [V++ => 3.1.161]

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION
~ /trunk/nlme/man/pdMat.Rd
~ /trunk/nlme/man/reStruct.Rd
~ /trunk/nlme/NAMESPACE
~ /trunk/nlme/R/pdMat.R

Rev 8154 – update

ripley — Thu, 27 Oct 2022 12:25:39 +0000

ripley – 2 file(s) modified
update

~ /trunk/nlme/ChangeLog
~ /trunk/nlme/DESCRIPTION

Rev 8143 – add ChangeLog entry for r8120

ripley — Mon, 03 Oct 2022 16:45:17 +0000

ripley – 1 file(s) modified
add ChangeLog entry for r8120

~ /trunk/nlme/ChangeLog

Rev 8114 – typo

maechler — Fri, 29 Jul 2022 07:07:46 +0000

maechler – 1 file(s) modified
typo

~ /trunk/nlme/ChangeLog

R-packages – /trunk/nlme/ChangeLog

Rev 8613 – New release.

Rev 8597 – remove 'SASmixed' (archived), embedding data(PBIB) in the reproduction script

Rev 8593 – bump version

Rev 8592 – fix error message for missing start values

Rev 8591 – change start values for compatibility with OpenBLAS on aarch64

Rev 8582 – increase (empirical) tolerance

Rev 8521 – prepare for release

Rev 8495 – log the release

Rev 8447 – fix print.summary.corNatural()

Rev 8444 – guard 'optif9' against non-finite 'internal_loglik' (PR#17955, PR#18433)

Rev 8441 – c8439 indeed also fixes gnls() crashes (PR#17227)

Rev 8439 – fix crashes from nlme() with spatial correlation (PR#18192)

Rev 8437 – test corMatrix() with spatial correlation *and* groups (previously not covered ...

Rev 8434 – New release.

Rev 8432 – catch invalid p and q values when initializing "corARMA" (PR#18777)

Rev 8418 – use 'MASS' conditionally in tests

Rev 8417 – Add package anchors for Rd xrefs to targets in package ...

Rev 8415 – no need for \donttest

Rev 8405 – sQuote(q=FALSE) in str.pdMat() needs R >= 3.6.0

Rev 8404 – spelling/markup

Rev 8382 – fix another scoping issue in nlme.nlsList()

Rev 8379 – catch corARMA() with p=0=q (PR#17988)

Rev 8374 – fix gls-part of PR#16806

Rev 8373 – fix lme-part of PR#16806

Rev 8363 – warn about misguided varIdent(~1|g)

Rev 8361 – fix nlme() for fixed variance weights (PR#17712)

Rev 8359 – fix another scoping issue

Rev 8313 – rm dependency; simplif

Rev 8259 – typo

Rev 8256 – save formula in nlme() & gnls(); fixing PR#18559

Rev 8218 – loosen all.equal(tol=.)

Rev 8186 – tweaks

Rev 8184 – deprecate corIdent(); new Version: 3.1-162

Rev 8183 – fix PR#18438

Rev 8180 – suppress spurious warning from example(balancedGrouped)

Rev 8179 – fix deprecation logic of n[fm]GroupedData

Rev 8161 – provide str.pdMat() [V++ => 3.1.161]

Rev 8154 – update

Rev 8143 – add ChangeLog entry for r8120

Rev 8114 – typo

Rev 8437 – test corMatrix() with spatial correlation and groups (previously not covered ...