The R Project SVN R-packages

## export functions
export(
  acfplot,
  HPDinterval,
  as.array.mcmc.list,
  as.mcmc,
  as.mcmc.list,
  autocorr,
  ##RGA
  autocorr.diag,
  autocorr.plot,
  ##RGA
  batchSE,
  bugs2jags,
  chanames,
  coda.options,
  codamenu,
  crosscorr,
  crosscorr.plot,
  cumuplot,
  densplot,
  display.coda.options,
  effectiveSize,
  gelman.diag,
  gelman.plot,
  geweke.diag,
  geweke.plot,
  heidel.diag,
  is.mcmc,
  is.mcmc.list,
  mcmc,
  mcmc.list,
  mcmcUpgrade,
  mcpar,
  multi.menu,
  nchain,
  niter,
  nvar,
  pcramer,
  raftery.diag,
  read.and.check,
  read.coda.interactive,
  read.coda,
  read.jags,
  read.openbugs,
  ##RGA
  rejectionRate,
  spectrum0,
  spectrum0.ar,
  thin,
  traceplot,
  varnames,
  "varnames<-")

## export data
# export(line) 
# this doesn't need to be exported, not sure why, but it works fine
# as is.

# [1] [.mcmc         as.matrix.mcmc end.mcmc       frequency.mcmc plot.mcmc     
# [6] print.mcmc     start.mcmc     summary.mcmc   thin.mcmc      time.mcmc     
# [11] window.mcmc   

# [1] [.mcmc.list         as.matrix.mcmc.list as.mcmc.mcmc.list  
# [4] end.mcmc.list       plot.mcmc.list      start.mcmc.list    
# [7] summary.mcmc.list   thin.mcmc.list      time.mcmc.list     
# [10] window.mcmc.list   

## register S3 methods
S3method(as.mcmc, default)
S3method(as.mcmc.list, default)
S3method(as.ts, mcmc)
## as.matrix
S3method(as.matrix, mcmc)
S3method(as.matrix, mcmc.list)
## mcmc
S3method("[", mcmc)
S3method(end, mcmc) 
S3method(frequency, mcmc)
S3method(plot, mcmc)
S3method(print, mcmc)
S3method(start, mcmc) 
S3method(summary, mcmc)
S3method(thin, mcmc) 
S3method(time, mcmc)
S3method(window, mcmc)
S3method(head, mcmc)
S3method(tail, mcmc)
##RGA
S3method(autocorr.diag, mcmc)
S3method(rejectionRate, mcmc)
S3method(batchSE,mcmc)
S3method(as.data.frame,mcmc)
##DMB
S3method(HPDinterval, mcmc)

## mcmc.list
S3method("[", mcmc.list)
S3method(as.matrix, mcmc.list)
S3method(as.mcmc, mcmc.list)
S3method(as.array, mcmc.list)
S3method(end, mcmc.list)
S3method(plot, mcmc.list)
S3method(start, mcmc.list)
S3method(summary, mcmc.list)
S3method(thin, mcmc.list)
S3method(time, mcmc.list)
S3method(window, mcmc.list)
S3method(head, mcmc.list)
S3method(tail, mcmc.list)
##RGA
S3method(autocorr.diag, mcmc.list)
S3method(rejectionRate, mcmc.list)
S3method(batchSE,mcmc.list)
##DMB
S3method(HPDinterval, mcmc.list)

## misc
S3method(print, gelman.diag)
S3method(print, geweke.diag)
S3method(print, heidel.diag)
S3method(print, raftery.diag)
S3method(print, summary.mcmc)

## Imports
importFrom(grDevices, dev.cur, dev.interactive, dev.off, postscript,
           topo.colors, nclass.Sturges)
importFrom(graphics, abline, axis, hist, legend, lines, matplot, par,
           plot, polygon, text, title, barplot)
importFrom(lattice, xyplot, qqmath, densityplot, levelplot,
           panel.abline, panel.xyplot, trellis.par.get, do.breaks,
           panel.superpose, prepanel.qqmathline, splom)
importFrom(stats, Gamma, IQR, acf, aggregate, ar, as.formula, as.ts,
           cor, density, end, fft, frequency, glm, lm, lowess, predict, qf,
           qnorm, quantile, residuals, sd, start, time, ts, var, window)
importFrom(utils, head, menu, read.table, tail)

## lattice methods

S3method(xyplot, mcmc)
S3method(qqmath, mcmc)
S3method(densityplot, mcmc)
S3method(acfplot, mcmc)
S3method(levelplot, mcmc)

S3method(xyplot, mcmc.list)
S3method(qqmath, mcmc.list)
S3method(densityplot, mcmc.list)
S3method(acfplot, mcmc.list)