The R Project SVN – R-packages – Diff – /trunk/SQLiteDF/src/sqlite_workspace.c

 #include <stdio.h>
 #include <string.h>
 #define __SQLITE_WORKSPACE__
 #include "sqlite_dataframe.h"
+/* global variables */
 sqlite3 *g_workspace = NULL;
 char *g_sql_buf[NBUFS];
 int g_sql_buf_sz[NBUFS];
+/****************************************************************************
+ * UTILITY FUNCTIONS
+ ****************************************************************************/
+/* test if a file is a sqlite database file */
 sqlite3* _is_sqlitedb(char *filename) {
     sqlite3 *db;
     int res;
     res = sqlite3_open(filename, &db);
     if (res != SQLITE_OK) { goto is_sqlitedb_FAIL; }
     sqlite3_stmt *stmt; char *sql = "select * from sqlite_master";
     res = sqlite3_prepare(db, sql, -1, &stmt, 0);
     if (stmt != NULL) sqlite3_finalize(stmt);
     /*char **result_set;
     char nrow, ncol;
     res = sqlite3_get_table(db, "select * from sqlite_master limit 0",
             &result_set, &nrow, &ncol, NULL);
     sqlite3_free_table(result_set);*/
     if (res != SQLITE_OK) goto is_sqlitedb_FAIL;
     return db;
 is_sqlitedb_FAIL:
     sqlite3_close(db);
     return NULL;
+}
+/* test if a file is a SQLiteDF workspace */
 sqlite3* _is_workspace(char *filename) {
     sqlite3* db = _is_sqlitedb(filename);
     if (db != NULL) {
         sqlite3_stmt *stmt;
         char *sql = "select * from workspace";
         int res = sqlite3_prepare(db, sql, -1, &stmt, 0), ncols;
         if ((res != SQLITE_OK) || /* no workspace table */
               ((ncols = sqlite3_column_count(stmt)) != WORKSPACE_COLUMNS) ||
               /* below also checks the ordering of the columns */
               (strcmp(sqlite3_column_name(stmt, 0), "rel_filename") != 0) ||
               (strcmp(sqlite3_column_decltype(stmt, 0), "text") != 0) ||
               (strcmp(sqlite3_column_name(stmt, 1), "full_filename") != 0) ||
               (strcmp(sqlite3_column_decltype(stmt, 1), "text") != 0) ||
               (strcmp(sqlite3_column_name(stmt, 2), "internal_name") != 0) ||
               (strcmp(sqlite3_column_decltype(stmt, 2), "text") != 0)) {
             sqlite3_finalize(stmt); sqlite3_close(db); db = NULL;
         } else {
             sqlite3_finalize(stmt);
+        }
+    }
     return db;
+}
+/* test if a file is a sqlite.data.frame. returns the internal name of the
+ * sdf if file is an sdf or NULL otherwise */
-int _is_sdf(char *filename) {
+char * _is_sdf2(char *filename) {
     sqlite3* db = _is_sqlitedb(filename);
-    int ret = (db != NULL);
+    char *ret = (db == NULL) ? NULL : filename;
     if (ret) {
         sqlite3_stmt *stmt;
-        char *sql = "select * from sdf_attributes";
+        char *sql = "select * from sdf_attributes where attr='name'";
+        int res, ncols;
-        int res = sqlite3_prepare(db, sql, -1, &stmt, NULL), ncols;
+        res = sqlite3_prepare(db, sql, -1, &stmt, NULL);
-        ret = ((res == SQLITE_OK) && /* no attribute table */
+        ret = (((res == SQLITE_OK) && /* no attribute table */
                ((ncols = sqlite3_column_count(stmt)) == 2) &&
                (strcmp(sqlite3_column_name(stmt, 0), "attr") == 0) &&
                (strcmp(sqlite3_column_decltype(stmt, 0), "text") == 0) &&
                (strcmp(sqlite3_column_name(stmt, 1), "value") == 0) &&
-               (strcmp(sqlite3_column_decltype(stmt, 1), "text") == 0)) ;
+               (strcmp(sqlite3_column_decltype(stmt, 1), "text") == 0))) ? ret : NULL ;
-        if (!ret) goto _is_sdf_cleanup;
-        sqlite3_finalize(stmt);
+        if (ret == NULL) goto _is_sdf_cleanup;
+        /* get internal name */
+        res = sqlite3_step(stmt);
+        ret = (res == SQLITE_ROW) ? ret : NULL;
+        if (ret == NULL) goto _is_sdf_cleanup;
+        /* copy to buf2, because when we finalize stmt, we won't be sure
+         * if sqlite3_column_text()'s ret value will still be there */
+        strcpy(g_sql_buf[2], (char *)sqlite3_column_text(stmt, 1));
+        ret = g_sql_buf[2];
+        sqlite3_finalize(stmt);
         sql = "select * from sdf_data";
         res = sqlite3_prepare(db, sql, -1, &stmt, NULL);
-        ret = (res == SQLITE_OK);  /* if not, missing data table */
+        ret = (res == SQLITE_OK) ? ret : NULL;  /* if not, missing data table */
 _is_sdf_cleanup:
         sqlite3_finalize(stmt);
         sqlite3_close(db);
+    }
     return ret;
+}
+/* remove an sdf from the workspace */
 void _delete_sdf2(char *iname) {
     sprintf(g_sql_buf[2], "delete from workspace where internal_name='%s';", iname);
     _sqlite_exec(g_sql_buf[2]);
+}
+/* add a sdf to the workspace */
 int _add_sdf1(char *filename, char *internal_name) {
     sprintf(g_sql_buf[1], "insert into workspace(rel_filename, full_filename, internal_name) values('%s', '%s', '%s')",
             filename, _get_full_pathname2(filename), internal_name);
     return _sqlite_exec(g_sql_buf[1]);
+}
+static char* _get_sdf_detail2(char *iname, int what) {
+    sqlite3_stmt *stmt;
+    char * ret; int res;
+    sprintf(g_sql_buf[2], "select full_filename from workspace where "
+            "internal_name='%s'", iname);
+    sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt, NULL);
+    res = sqlite3_step(stmt);
+    sqlite3_finalize(stmt);
+    if (res == SQLITE_DONE) {
+        ret = NULL;
+    } else {
+        ret = g_sql_buf[2];
+        switch (what) {
+            case SDF_DETAIL_EXISTS:
+                break; /* doesn't matter */
+            case SDF_DETAIL_FULLFILENAME:
+                strcpy(g_sql_buf[2], (char *)sqlite3_column_text(stmt, 0));
+                break;
+        }
+    }
+    return ret;
+}
+/* returns TRUE if sdf exists in the workspace */
+int _sdf_exists2(char *iname) {
+    return _get_sdf_detail2(iname, SDF_DETAIL_EXISTS) != NULL;
+}
+/****************************************************************************
+ * WORKSPACE FUNCTIONS
+ ****************************************************************************/
 SEXP sdf_init_workspace() {
     int file_idx = 0, i;
     char *basename = "workspace", *filename;
     SEXP ret;
     /* initialize sql_buf */
     for (i = 0; i < NBUFS; i++) {
         if (g_sql_buf[i] == NULL) {
             g_sql_buf_sz[i] = 1024;
             g_sql_buf[i] = Calloc(g_sql_buf_sz[i], char);
+        }
+    }
     /*
      * check for workspace.db, workspace1.db, ..., workspace9999.db if they
      * are valid workspace file. if one is found, use that as the workspace.
      */
     filename = R_alloc(18, sizeof(char)); /* workspace10000.db\0 */
     sprintf(filename, "%s.db", basename);
     while(_file_exists(filename) && file_idx < 10000) {
         if ((g_workspace = _is_workspace(filename)) != NULL) break;
         /* warn("%s is not a workspace", filename) */
         sprintf(filename, "%s%d.db", basename, ++file_idx);
+    }
     PROTECT(ret = NEW_LOGICAL(1));
     if ((g_workspace == NULL) && (file_idx < 10000)) {
         /* no workspace found but there are still "available" file name */
         /* if (file_idx) warn("workspace will be stored at #{filename}") */
         sqlite3_open(filename, &g_workspace);
         _sqlite_exec("create table workspace(rel_filename text, full_filename text, internal_name text)");
         LOGICAL(ret)[0] = TRUE;
     } else if (g_workspace != NULL) {
         /* a valid workspace has been found, load each of the tables */
         int res, nrows, ncols;
         char **result_set, *fname, *iname;
         res = sqlite3_get_table(g_workspace, "select * from workspace",
                 &result_set, &nrows, &ncols, NULL);
         if (res == SQLITE_OK && nrows >= 1 && ncols == WORKSPACE_COLUMNS) {
             for (i = 1; i <= nrows; i++) {
                 /* we will use rel_filename in opening the file, so that
                  * if the user is "sensible", files will be dir agnostic */
                 fname = result_set[i*ncols]; iname = result_set[i*ncols+2];
                 if (!_file_exists(fname)) {
                     Rprintf("Warning: SDF %s does not exist.\n", iname);
                     _delete_sdf2(iname);
                     continue;
+                }
-                if (!_is_sdf(fname)) {
+                if (_is_sdf2(fname) == NULL) {
                     Rprintf("Warning: %s is not a valid SDF.\n", fname);
                     _delete_sdf2(iname);
                     continue;
+                }
                 /* attach db */
                 sprintf(g_sql_buf[0], "attach '%s' as %s", fname, iname);
                 _sqlite_exec(g_sql_buf[0]);
                 /* update full_filename */
                 sprintf(g_sql_buf[0], "update workspace set full_filename='%s' where iname='%s'", _get_full_pathname2(fname), iname);
                 _sqlite_exec(g_sql_buf[0]);
+            }
+        }
         sqlite3_free_table(result_set);
         LOGICAL(ret)[0] = TRUE;
     } else { /* can't find nor create workspace */
         LOGICAL(ret)[0] = FALSE;
+    }
     UNPROTECT(1);
+    /* register sqlite math functions */
+    __register_vector_math();
     return ret;
+}
 SEXP sdf_finalize_workspace() {
     SEXP ret;
     PROTECT(ret = NEW_LOGICAL(1));
     LOGICAL(ret)[0] = (sqlite3_close(g_workspace) == SQLITE_OK);
     for (int i = 0; i < NBUFS; i++) Free(g_sql_buf[i]);
     UNPROTECT(1);
     return ret;
+}
 SEXP sdf_list_sdfs(SEXP pattern) {
     SEXP ret;
     char **result;
     int nrow, ncol, res, i;
     if (TYPEOF(pattern) != STRSXP) {
         res = sqlite3_get_table(g_workspace, "select internal_name from workspace",
                 &result, &nrow, &ncol, NULL);
     } else {
         /* since internal_names must be a valid r symbol,
            did not check for "'" */
         sprintf(g_sql_buf[0], "select internal_name from workspace where "
                 "internal_name like '%s%%'", CHAR(STRING_ELT(pattern, 0)));
         res = sqlite3_get_table(g_workspace, g_sql_buf[0], &result, &nrow,
                 &ncol, NULL);
+    }
     if (_sqlite_error(res)) return R_NilValue;
     PROTECT(ret = NEW_CHARACTER(nrow));
     for (i = 0; i < nrow; i++) SET_STRING_ELT(ret, i, mkChar(result[i+1]));
     sqlite3_free_table(result);
     UNPROTECT(1);
     return ret;
+}
 SEXP sdf_get_sdf(SEXP name) {
     if (TYPEOF(name) != STRSXP) {
         Rprintf("Error: Argument must be a string containing the SDF name.\n");
         return R_NilValue;
+    }
     char *iname = CHAR(STRING_ELT(name, 0));
     SEXP ret;
     sqlite3_stmt *stmt;
     int res;
     res = sqlite3_prepare(g_workspace, "select * from workspace where internal_name=?",
             -1, &stmt, NULL);
     if (_sqlite_error(res)) return R_NilValue;
     sqlite3_bind_text(stmt, 1, iname, strlen(iname), SQLITE_STATIC);
     res = sqlite3_step(stmt);
     if (res == SQLITE_ROW) ret = _create_sdf_sexp(iname);
-    else ret = R_NilValue;
+    else { Rprintf("Error: SDF %s not found.\n", iname); ret = R_NilValue; }
     sqlite3_finalize(stmt);
     return ret;
+}
 SEXP sdf_attach_sdf(SEXP filename, SEXP internal_name) {
+    /* when studying this, please be mindful of the global buffers used.
+     * you have been warned */
-    char *fname, *iname;
+    char *fname, *iname, *iname_orig;;
     int fnamelen, res;
     sqlite3_stmt *stmt;
     if (IS_CHARACTER(filename)) {
         fname = CHAR_ELT(filename, 0);
         fnamelen = strlen(fname);
     } else {
         Rprintf("Error: filename argument must be a string.\n");
         return R_NilValue;
+    }
     if (strcmp(fname+(fnamelen-3),".db") != 0) {
         Rprintf("Error: Cannot attach because extension is not .db, which may cause problems [%s].\n");
         return R_NilValue;
+    }
+    /* check if it is a valid sdf file */
+    if (_is_sdf2(fname) == NULL) {
+        Rprintf("Error: %s is not a valid SDF.\n", fname);
+        return R_NilValue;
+    } else {
+        /* _is_sdf2 puts the orig iname in buf2. transfer data to buf0 since
+         * functions called below will use buf2 */
+        strcpy(g_sql_buf[0], g_sql_buf[2]);
+        iname_orig = g_sql_buf[0];
+    }
-    /* check if it exists in the workspace already */
+    /* check if file to be attached exists in the workspace already */
     _get_full_pathname2(fname);
     res = sqlite3_prepare(g_workspace, "select internal_name from workspace where full_filename=?",
             -1, &stmt, NULL);
-    sqlite3_bind_text(stmt, 1, g_sql_buf[2], strlen(g_sql_buf[2]), SQLITE_STATIC);
+    sqlite3_bind_text(stmt, 1, g_sql_buf[2], -1, SQLITE_STATIC);
     res = sqlite3_step(stmt);
     if (res == SQLITE_ROW) {
         Rprintf("Warning: That sdf is already attached as '%s'\n",
                 sqlite3_column_text(stmt, 0));
         sqlite3_finalize(stmt);
         return R_NilValue;
     } else sqlite3_finalize(stmt);
     /* internal_name checking and processing. */
-    int file_idx, inamelen;
     if (IS_CHARACTER(internal_name)) {
+        /* if name is specified, rename the sdf. original internal name is the
+         * one stored at sdf_attribute */
         iname = CHAR_ELT(internal_name, 0);
         if (!_is_r_sym(iname)) {
-            Rprintf("Error: %s is not a valid R symbol.", iname);
+            Rprintf("Error: %s is not a valid R symbol.\n", iname);
             return R_NilValue;
+        }
-        res = sqlite3_prepare(g_workspace, "select full_filename from workspace "
-               " where internal_name=?", -1, &stmt, NULL);
-        sqlite3_bind_text(stmt, 1, iname, strlen(iname), SQLITE_STATIC);
-        res = sqlite3_step(stmt);
-        if (res == SQLITE_ROW) {
-            Rprintf("Warning: The sdf internal name '%s' is already taken by file %s.\n",
-                    iname, sqlite3_column_text(stmt, 1));
-            sqlite3_finalize(stmt);
-            return R_NilValue;
-        } else sqlite3_finalize(stmt);
     } else {
-        file_idx = 1;
-        res = sqlite3_prepare(g_workspace, "select 1 from workspace "
-               " where internal_name=?", -1, &stmt, NULL);
-        do {
-            inamelen = sprintf(g_sql_buf[0], "data%d", file_idx++);
+        /* if no name is specified, use original internal name */
-            sqlite3_bind_text(stmt, 1, g_sql_buf[0], inamelen, SQLITE_STATIC);
-            res = sqlite3_step(stmt);
-            sqlite3_reset(stmt);
-        } while (res == SQLITE_ROW && file_idx < 10000);
-        sqlite3_finalize(stmt);
-        if (file_idx < 10000) {
-            iname = g_sql_buf[0];
+        iname = (char *)iname_orig;  /* g_sql_buf[0]! */
-        } else {
-            Rprintf("Error: Cannot find a free default file name.\n");
-            return R_NilValue;
-        }
+    }
-    /* check if it is a valid sdf file */
+    /* check if internal name is already used in the workspace */
+    res = sqlite3_prepare(g_workspace, "select full_filename from workspace "
+           " where internal_name=?", -1, &stmt, NULL);
+    sqlite3_bind_text(stmt, 1, iname, -1, SQLITE_STATIC);
+    res = sqlite3_step(stmt);
-    if (!_is_sdf(fname)) {
+    if (res == SQLITE_ROW) {
-        Rprintf("Error: %s is not a valid SDF.\n", fname);
+        Rprintf("Error: The sdf internal name '%s' is already used by file %s.\n",
+                iname, sqlite3_column_text(stmt, 1));
+        sqlite3_finalize(stmt);
         return R_NilValue;
     }
+    sqlite3_finalize(stmt);
     /* finally, attach it. */
     sprintf(g_sql_buf[1], "attach '%s' as [%s]", fname, iname);
     res = _sqlite_exec(g_sql_buf[1]);
     if (_sqlite_error(res)) return R_NilValue;
+    /* if internal name found in newly-attached-SDF is the same as the
+     * name wanted by the user, do nothing. otherwise, update sdf_attribute
+     * on attached-SDF. this is like attachSdf then renameSdf */
+    if (iname != iname_orig && strcmp(iname, iname_orig) != 0) {
+        sprintf(g_sql_buf[1], "update [%s].sdf_attributes set value=? where attr='name'",
+                iname);
+        res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, NULL);
+        if (_sqlite_error(res)) {
+            sqlite3_finalize(stmt);
+            sprintf(g_sql_buf[1], "detach [%s]", iname);
+            _sqlite_exec(g_sql_buf[1]);
+            return R_NilValue;
+        }
+        res = sqlite3_bind_text(stmt, 1, iname, -1, SQLITE_STATIC);
+        res = sqlite3_step(stmt);
+        sqlite3_finalize(stmt);
+    }
     /* .. and update workspace */
     res = _add_sdf1(fname, iname);
     if (_sqlite_error(res)) return R_NilValue;
     return _create_sdf_sexp(iname);
+}
 SEXP sdf_detach_sdf(SEXP internal_name) {
     if (!IS_CHARACTER(internal_name)) {
         Rprintf("Error: iname argument is not a string.\n");
         return R_NilValue;
+    }
     char *iname = CHAR_ELT(internal_name, 0);
     sprintf(g_sql_buf[0], "detach [%s]", iname);
     SEXP ret; int res;
     res = _sqlite_exec(g_sql_buf[0]);
     res = !_sqlite_error(res);
     if (res) _delete_sdf2(iname);
     PROTECT(ret = NEW_LOGICAL(1));
     LOGICAL(ret)[0] = res;
     UNPROTECT(1);
     return ret;
+}
+SEXP sdf_rename_sdf(SEXP sdf, SEXP name) {
+    char *iname, *path, *newname;
+    SEXP ret;
+    int res, ret_tmp;
+    iname = SDF_INAME(sdf);
+    newname = CHAR_ELT(name, 0);
+    /* check if valid r name */
+    if (!_is_r_sym(newname)) {
+        Rprintf("Error: %s is not a valid R symbol.", iname);
+        return R_NilValue;
+    }
+    /* check if sdf already exists */
+    if (_sdf_exists2(newname)) { /* name is already taken */
+        Rprintf("Error: the name \"%s\" is already taken.\n", newname);
+        return R_NilValue;
+    }
+    /* get path of the sdf file, because we're goint to detach it */
+    path = _get_sdf_detail2(iname, SDF_DETAIL_FULLFILENAME);
+    if (path == NULL) {
+        Rprintf("Error: no sdf named \"%s\" exists.\n", iname);
+        return R_NilValue;
+    }
+    /* change name in sdf_attribute */
+    sprintf(g_sql_buf[0], "update [%s].sdf_attributes set value='%s' "
+            "where attr='name'", iname, newname);
+    res = _sqlite_exec(g_sql_buf[0]);
+    Rprintf("result: %d\n", res);
+    /* if (_sqlite_error(res)) return R_NilValue; */
+    /* detach and remove sdf from workspace */
+    sprintf(g_sql_buf[0], "detach '%s'", iname);
+    res = _sqlite_exec(g_sql_buf[0]);
+    ret_tmp = !_sqlite_error(res);
+    /* remove from ws, attach and add again to ws using new name */
+    if (ret_tmp) {
+        _delete_sdf2(iname);
+        sprintf(g_sql_buf[0], "attach '%s' as '%s'", path, newname);
+        res = _sqlite_exec(g_sql_buf[0]);
+        ret_tmp = !_sqlite_error(res);
+        /* TODO: make path relative! */
+        _add_sdf1(iname, path);
+    }
+    PROTECT(ret = NEW_LOGICAL(1));
+    LOGICAL(ret)[0] = ret_tmp;
+    UNPROTECT(1);
+    return ret;
+}

The R Project SVN R-packages

(root)/trunk/SQLiteDF/src/sqlite_workspace.c – Rev 3282 → 3307