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#include "sqlite_dataframe.h"
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#include <math.h>
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#include "Rmath.h"
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SEXP sdf_get_variable(SEXP sdf, SEXP name) {
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if (!IS_CHARACTER(name)) {
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Rprintf("ERROR: argument is not a string.\n");
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return R_NilValue;
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}
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char *iname = SDF_INAME(sdf);
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char *varname = CHAR_ELT(name, 0);
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/* check if sdf & varname w/in that sdf exists */
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sqlite3_stmt *stmt;
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sprintf(g_sql_buf[0], "select [%s] from [%s].sdf_data", varname, iname);
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int res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
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if (_sqlite_error(res)) return R_NilValue;
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const char *coltype = sqlite3_column_decltype(stmt, 0);
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sqlite3_finalize(stmt);
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SEXP ret, value, class = R_NilValue; int nprotected = 0;
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PROTECT(ret = NEW_LIST(2)); nprotected++;
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/* set list names */
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PROTECT(value = NEW_CHARACTER(2)); nprotected++;
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SET_STRING_ELT(value, 0, mkChar("iname"));
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SET_STRING_ELT(value, 1, mkChar("varname"));
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SET_NAMES(ret, value);
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/* set list values */
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SET_VECTOR_ELT(ret, 0, mkString(iname));
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SET_VECTOR_ELT(ret, 1, mkString(varname));
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/* set class */
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int type = -1;
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if (strcmp(coltype, "text") == 0) class = mkChar("character");
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else if (strcmp(coltype, "double") == 0) class = mkChar("numeric");
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else if (strcmp(coltype, "bit") == 0) class = mkChar("logical");
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else if (strcmp(coltype, "integer") == 0 || strcmp(coltype, "int") == 0) {
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/* determine if int, factor or ordered */
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type = _get_factor_levels1(iname, varname, ret);
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switch(type) {
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case VAR_INTEGER: class = mkChar("integer"); break;
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case VAR_FACTOR: class = mkChar("factor"); break;
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case VAR_ORDERED: class = mkChar("ordered");
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}
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}
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if (type != VAR_ORDERED) {
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PROTECT(value = NEW_CHARACTER(2)); nprotected++;
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SET_STRING_ELT(value, 0, mkChar("sqlite.vector"));
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SET_STRING_ELT(value, 1, class);
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} else {
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PROTECT(value = NEW_CHARACTER(3)); nprotected++;
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SET_STRING_ELT(value, 0, mkChar("sqlite.vector"));
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SET_STRING_ELT(value, 1, class);
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SET_STRING_ELT(value, 2, mkChar("factor"));
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}
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SET_CLASS(ret, value);
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UNPROTECT(nprotected);
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return ret;
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}
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int _get_vector_index_typed_result(sqlite3_stmt *stmt, SEXP *ret, int idx_or_len) {
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int added = 1;
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if (*ret == NULL || *ret == R_NilValue) {
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const char *coltype = sqlite3_column_decltype(stmt, 0);
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if (sqlite3_column_type(stmt, 0) == SQLITE_NULL) {
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added = 0;
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}
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if (strcmp(coltype, "text") == 0) {
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PROTECT(*ret = NEW_CHARACTER(idx_or_len));
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if (added)
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SET_STRING_ELT(*ret, 0, mkChar((char *)sqlite3_column_text(stmt, 0)));
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} else if (strcmp(coltype, "double") == 0) {
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PROTECT(*ret = NEW_NUMERIC(idx_or_len));
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if (added) REAL(*ret)[0] = sqlite3_column_double(stmt, 0);
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} else if (strcmp(coltype, "bit") == 0) {
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PROTECT(*ret = NEW_LOGICAL(idx_or_len));
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if (added) INTEGER(*ret)[0] = sqlite3_column_int(stmt, 0);
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} else if (strcmp(coltype, "integer") == 0 ||
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strcmp(coltype, "int") == 0) {
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/* caller should just copy off the vars level attr for factors */
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PROTECT(*ret = NEW_INTEGER(idx_or_len));
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if (added) INTEGER(*ret)[0] = sqlite3_column_int(stmt, 0);
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} else added = 0;
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UNPROTECT(1);
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} else {
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const char *coltype = sqlite3_column_decltype(stmt, 0);
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if (sqlite3_column_type(stmt, 0) == SQLITE_NULL) {
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added = 0;
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} else if (strcmp(coltype, "text") == 0) {
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SET_STRING_ELT(*ret, idx_or_len,
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mkChar((char *)sqlite3_column_text(stmt, 0)));
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} else if (strcmp(coltype, "double") == 0) {
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REAL(*ret)[idx_or_len] = sqlite3_column_double(stmt, 0);
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} else if (strcmp(coltype, "bit") == 0) {
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INTEGER(*ret)[idx_or_len] = sqlite3_column_int(stmt, 0);
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} else if (strcmp(coltype, "integer") == 0 ||
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strcmp(coltype, "int") == 0) {
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/* caller should just copy off the vars level attr for factors */
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INTEGER(*ret)[idx_or_len] = sqlite3_column_int(stmt, 0);
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} else added = 0;
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}
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return added;
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}
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SEXP sdf_get_variable_length(SEXP svec) {
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char *iname = SDF_INAME(svec);
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sprintf(g_sql_buf[0], "[%s].sdf_data", iname);
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SEXP ret;
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PROTECT(ret = NEW_INTEGER(1));
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INTEGER(ret)[0] = _get_row_count2(g_sql_buf[0]);
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UNPROTECT(1);
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return ret;
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}
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SEXP sdf_get_variable_index(SEXP svec, SEXP idx) {
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SEXP ret = R_NilValue, tmp;
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char *iname = SDF_INAME(svec), *varname = SVEC_VARNAME(svec);
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int index, idxlen, i, retlen=0, res;
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/* check if sdf exists */
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sqlite3_stmt *stmt;
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sprintf(g_sql_buf[0], "select [%s] from [%s].sdf_data", varname, iname);
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res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
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sqlite3_finalize(stmt);
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if (_sqlite_error(res)) { return ret; }
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idxlen = LENGTH(idx);
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if (idxlen < 1) return ret;
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sprintf(g_sql_buf[0], "select [%s] from [%s].sdf_data limit ?,1",
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varname, iname);
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res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
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/* get data based on index */
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if (IS_NUMERIC(idx)) {
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index = ((int) REAL(idx)[0]) - 1;
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if (index < 0 && idxlen == 1) return ret;
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if (index >= 0) {
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sqlite3_bind_int(stmt, 1, index);
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res = sqlite3_step(stmt);
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if (res == SQLITE_ROW) {
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retlen = _get_vector_index_typed_result(stmt, &ret, idxlen);
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}
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}
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if (index < 0 || res != SQLITE_ROW) {
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/* something wrong w/ 1st idx, and it is quietly ignored. we make
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* a "dummy" call to setup the SEXP */
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sqlite3_bind_int(stmt, 1, 0);
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_get_vector_index_typed_result(stmt, &ret, idxlen - 1);
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retlen = 0;
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}
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if (idxlen > 1) {
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for (i = 1; i < idxlen; i++) {
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index = ((int) REAL(idx)[i]) - 1;
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if (index < 0) continue;
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sqlite3_reset(stmt);
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sqlite3_bind_int(stmt, 1, index);
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res = sqlite3_step(stmt);
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if (res == SQLITE_ROW)
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retlen += _get_vector_index_typed_result(stmt, &ret, retlen);
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}
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}
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} else if (IS_INTEGER(idx)) {
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/* similar to REAL (IS_NUMERIC) above, except that we don't have
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* to cast idx to int. can't refactor this out, sucks. */
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index = INTEGER(idx)[0] - 1;
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if (index < 0 && idxlen == 1) return ret;
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if (index >= 0) {
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sqlite3_bind_int(stmt, 1, index);
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res = sqlite3_step(stmt);
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if (res == SQLITE_ROW) {
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retlen = _get_vector_index_typed_result(stmt, &ret, idxlen);
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}
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}
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if (index < 0 || res != SQLITE_ROW) {
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/* something wrong w/ 1st idx, and it is quietly ignored. we make
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* a "dummy" call to setup the SEXP */
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sqlite3_bind_int(stmt, 1, 0);
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_get_vector_index_typed_result(stmt, &ret, idxlen - 1);
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retlen = 0;
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}
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if (idxlen > 1) {
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for (i = 1; i < idxlen; i++) {
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index = INTEGER(idx)[i] - 1;
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if (index < 0) continue;
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sqlite3_reset(stmt);
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sqlite3_bind_int(stmt, 1, index);
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sqlite3_step(stmt);
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retlen += _get_vector_index_typed_result(stmt, &ret, retlen);
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}
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}
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} else if (IS_LOGICAL(idx)) {
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/* have to deal with recycling */
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sprintf(g_sql_buf[0], "[%s].sdf_data", iname);
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int veclen = _get_row_count2(g_sql_buf[0]);
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/* find if there is any TRUE element in the vector */
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for (i = 0; i < idxlen && i < veclen; i++) {
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if (LOGICAL(idx)[i]) {
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sqlite3_bind_int(stmt, 1, i);
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sqlite3_step(stmt);
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/* there are at least (idxlen-i) TRUE per cycle of the LOGICAL
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* index. there are at least (veclen/idxlen) cycles (int div).
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* at the last cycle, if (veclen%idxlen > 0), there will be
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* at least (veclen%idxlen - i) if veclen%idxlen > i */
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retlen = (idxlen-i) * (veclen/idxlen);
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if (veclen%idxlen > i) retlen += (veclen%idxlen - i);
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/* create the vector */
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retlen = _get_vector_index_typed_result(stmt, &ret, retlen);
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break;
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}
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}
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if (i < idxlen && i < veclen) {
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for (i++; i < veclen; i++) {
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240 |
if (LOGICAL(idx)[i%idxlen]) {
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sqlite3_reset(stmt);
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sqlite3_bind_int(stmt, 1, i);
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sqlite3_step(stmt);
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retlen += _get_vector_index_typed_result(stmt, &ret, retlen);
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}
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}
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}
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}
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249 |
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sqlite3_finalize(stmt);
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if (ret != R_NilValue) {
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ret = _shrink_vector(ret, retlen);
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tmp = GET_LEVELS(svec);
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if (tmp != R_NilValue) {
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SET_LEVELS(ret, duplicate(tmp));
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if (LENGTH(GET_CLASS(svec)) == 2) {
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SET_CLASS(ret, mkString("factor"));
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} else {
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PROTECT(tmp = NEW_CHARACTER(2));
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SET_STRING_ELT(tmp, 0, mkChar("ordered"));
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SET_STRING_ELT(tmp, 1, mkChar("factor"));
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UNPROTECT(1);
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}
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265 |
}
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266 |
}
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267 |
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return ret;
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269 |
}
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270 |
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271 |
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SEXP sdf_do_variable_math(SEXP func, SEXP vector, SEXP extra_args, SEXP _nargs) {
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273 |
char *iname, *iname_src, *varname_src, *funcname;
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274 |
int namelen, res, nargs;
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275 |
sqlite3_stmt *stmt;
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/* get data from arguments (function name and sqlite.vector stuffs) */
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278 |
funcname = CHAR_ELT(func, 0);
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279 |
iname_src = SDF_INAME(vector);
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280 |
varname_src = SVEC_VARNAME(vector);
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nargs = INTEGER(_nargs)[0];
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/* check nargs */
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284 |
if (nargs > 2) {
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285 |
Rprintf("Error: Don't know how to handle Math functions w/ more than 2 args\n");
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286 |
return R_NilValue;
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287 |
}
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288 |
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289 |
/* create a new sdf, with 1 column named V1 */
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290 |
iname = _create_sdf_skeleton2(R_NilValue, &namelen);
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291 |
if (iname == NULL) return R_NilValue;
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292 |
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293 |
sprintf(g_sql_buf[0], "create table [%s].sdf_data ([row name] text, "
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294 |
"V1 double)", iname);
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295 |
res = _sqlite_exec(g_sql_buf[0]);
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296 |
_sqlite_error(res);
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297 |
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298 |
/* insert into <newsdf>.col, row.names select func(col), rownames */
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299 |
sprintf(g_sql_buf[0], "insert into [%s].sdf_data([row name], V1) "
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300 |
"select [row name], %s([%s]) from [%s].sdf_data", iname, funcname,
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301 |
varname_src, iname_src);
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302 |
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303 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
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304 |
if (_sqlite_error(res)) {
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305 |
sprintf(g_sql_buf[0], "detach %s", iname);
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306 |
_sqlite_exec(g_sql_buf[0]);
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307 |
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308 |
/* we will return a string with the file name, and do file.remove
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309 |
* at R */
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310 |
iname[namelen] = '.';
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311 |
return mkString(iname);
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312 |
}
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313 |
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314 |
sqlite3_step(stmt);
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315 |
sqlite3_finalize(stmt);
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316 |
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317 |
/* add to workspace */
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|
318 |
strcpy(g_sql_buf[0], iname);
|
|
|
319 |
iname[namelen] = '.';
|
|
|
320 |
_add_sdf1(iname, g_sql_buf[0]);
|
|
|
321 |
iname[namelen] = 0;
|
|
|
322 |
|
|
|
323 |
/* create sqlite.vector sexp */
|
|
|
324 |
SEXP ret, value; int nprotected = 0;
|
|
|
325 |
PROTECT(ret = NEW_LIST(2)); nprotected++;
|
|
|
326 |
|
|
|
327 |
/* set list names */
|
|
|
328 |
PROTECT(value = NEW_CHARACTER(2)); nprotected++;
|
|
|
329 |
SET_STRING_ELT(value, 0, mkChar("iname"));
|
|
|
330 |
SET_STRING_ELT(value, 1, mkChar("varname"));
|
|
|
331 |
SET_NAMES(ret, value);
|
|
|
332 |
|
|
|
333 |
/* set list values */
|
|
|
334 |
SET_VECTOR_ELT(ret, 0, mkString(iname));
|
|
|
335 |
SET_VECTOR_ELT(ret, 1, mkString("V1"));
|
|
|
336 |
|
|
|
337 |
/* set sexp class */
|
|
|
338 |
PROTECT(value = NEW_CHARACTER(2)); nprotected++;
|
|
|
339 |
SET_VECTOR_ELT(value, 0, mkChar("sqlite.vector"));
|
|
|
340 |
SET_VECTOR_ELT(value, 1, mkChar("numeric"));
|
|
|
341 |
SET_CLASS(ret, value);
|
|
|
342 |
|
|
|
343 |
UNPROTECT(nprotected);
|
|
|
344 |
|
|
|
345 |
return ret;
|
|
|
346 |
|
|
|
347 |
}
|
|
|
348 |
|
|
|
349 |
|
|
|
350 |
|
|
|
351 |
/****************************************************************************
|
|
|
352 |
* VECTOR MATH/OPS/GROUP OPERATIONS
|
|
|
353 |
****************************************************************************/
|
|
|
354 |
int __vecmath_checkarg(sqlite3_context *ctx, sqlite3_value *arg, double *value) {
|
|
|
355 |
int ret = 1;
|
|
|
356 |
if (sqlite3_value_type(arg) == SQLITE_NULL) {
|
|
|
357 |
sqlite3_result_null(ctx);
|
|
|
358 |
ret = 0;
|
|
|
359 |
} else {
|
|
|
360 |
if (sqlite3_value_type(arg) == SQLITE_INTEGER)
|
|
|
361 |
*value = sqlite3_value_int(arg);
|
|
|
362 |
else *value = sqlite3_value_double(arg);
|
|
|
363 |
}
|
|
|
364 |
return ret;
|
|
|
365 |
}
|
|
|
366 |
|
|
|
367 |
#define SQLITE_MATH_FUNC1(name, func) static void __vecmath_ ## name(\
|
|
|
368 |
sqlite3_context *ctx, int argc, sqlite3_value **argv) { \
|
|
|
369 |
double value; \
|
|
|
370 |
if (__vecmath_checkarg(ctx, argv[0], &value)) { \
|
|
|
371 |
sqlite3_result_double(ctx, func(value)); \
|
|
|
372 |
} \
|
|
|
373 |
}
|
|
|
374 |
|
|
|
375 |
/* SQLITE_MATH_FUNC1(abs, abs) in SQLite */
|
|
|
376 |
SQLITE_MATH_FUNC1(sign, sign) /* in R */
|
|
|
377 |
SQLITE_MATH_FUNC1(sqrt, sqrt)
|
|
|
378 |
SQLITE_MATH_FUNC1(floor, floor)
|
|
|
379 |
SQLITE_MATH_FUNC1(ceiling, ceil)
|
|
|
380 |
SQLITE_MATH_FUNC1(trunc, ftrunc) /* in R */
|
|
|
381 |
/* SQLITE_MATH_FUNC1(round, ) in SQLite */
|
|
|
382 |
/* SQLITE_MATH_FUNC1(signif, ) 2 arg */
|
|
|
383 |
SQLITE_MATH_FUNC1(exp, exp)
|
|
|
384 |
/* SQLITE_MATH_FUNC1(log, ) 2 arg */
|
|
|
385 |
SQLITE_MATH_FUNC1(cos, cos)
|
|
|
386 |
SQLITE_MATH_FUNC1(sin, sin)
|
|
|
387 |
SQLITE_MATH_FUNC1(tan, tan)
|
|
|
388 |
SQLITE_MATH_FUNC1(acos, acos)
|
|
|
389 |
SQLITE_MATH_FUNC1(asin, asin)
|
|
|
390 |
SQLITE_MATH_FUNC1(atan, atan)
|
|
|
391 |
SQLITE_MATH_FUNC1(cosh, cosh)
|
|
|
392 |
SQLITE_MATH_FUNC1(sinh, sinh)
|
|
|
393 |
SQLITE_MATH_FUNC1(tanh, tanh)
|
|
|
394 |
SQLITE_MATH_FUNC1(acosh, acosh) /* nowhere in include?? */
|
|
|
395 |
SQLITE_MATH_FUNC1(asinh, asinh) /* nowhere in include?? */
|
|
|
396 |
SQLITE_MATH_FUNC1(atanh, atanh) /* nowhere in include?? */
|
|
|
397 |
SQLITE_MATH_FUNC1(lgamma, lgammafn) /* in R */
|
|
|
398 |
SQLITE_MATH_FUNC1(gamma, gammafn) /* in R */
|
|
|
399 |
/* SQLITE_MATH_FUNC1(gammaCody, gammaCody) * in R ?? */
|
|
|
400 |
SQLITE_MATH_FUNC1(digamma, digamma) /* in R */
|
|
|
401 |
SQLITE_MATH_FUNC1(trigamma, trigamma) /* in R */
|
|
|
402 |
|
|
|
403 |
#define VMENTRY1(func) {#func, __vecmath_ ## func}
|
|
|
404 |
void __register_vector_math() {
|
|
|
405 |
int i, res;
|
|
|
406 |
static const struct {
|
|
|
407 |
char *name;
|
|
|
408 |
void (*func)(sqlite3_context*, int, sqlite3_value**);
|
|
|
409 |
} arr_func1[] = {
|
|
|
410 |
VMENTRY1(sign),
|
|
|
411 |
VMENTRY1(sqrt),
|
|
|
412 |
VMENTRY1(floor),
|
|
|
413 |
VMENTRY1(ceiling),
|
|
|
414 |
VMENTRY1(trunc),
|
|
|
415 |
VMENTRY1(exp),
|
|
|
416 |
VMENTRY1(cos),
|
|
|
417 |
VMENTRY1(sin),
|
|
|
418 |
VMENTRY1(tan),
|
|
|
419 |
VMENTRY1(acos),
|
|
|
420 |
VMENTRY1(asin),
|
|
|
421 |
VMENTRY1(atan),
|
|
|
422 |
VMENTRY1(cosh),
|
|
|
423 |
VMENTRY1(sinh),
|
|
|
424 |
VMENTRY1(tanh),
|
|
|
425 |
VMENTRY1(acosh),
|
|
|
426 |
VMENTRY1(asinh),
|
|
|
427 |
VMENTRY1(atanh),
|
|
|
428 |
VMENTRY1(lgamma),
|
|
|
429 |
VMENTRY1(gamma),
|
|
|
430 |
VMENTRY1(digamma),
|
|
|
431 |
VMENTRY1(trigamma)
|
|
|
432 |
};
|
|
|
433 |
|
|
|
434 |
int func1_len = sizeof(arr_func1) / sizeof(arr_func1[0]);
|
|
|
435 |
|
|
|
436 |
for (i = 0; i < func1_len; i++) {
|
|
|
437 |
res = sqlite3_create_function(g_workspace, arr_func1[i].name, 1,
|
|
|
438 |
SQLITE_ANY, NULL, arr_func1[i].func, NULL, NULL);
|
|
|
439 |
_sqlite_error(res);
|
|
|
440 |
}
|
|
|
441 |
}
|