The R Project SVN R-packages

Rev

Rev 3397 | Rev 3435 | Go to most recent revision | Only display areas with differences | Ignore whitespace | Details | Blame | Last modification | View Log | RSS feed

Rev 3397 Rev 3419
1
#include "R.h"
1
#include "R.h"
2
#include "Rdefines.h"
2
#include "Rdefines.h"
3
#include "Rinternals.h"
3
#include "Rinternals.h"
4
#include "sqlite3.h"
4
#include "sqlite3.h"
5
 
5
 
6
#ifndef __SQLITE_DATAFRAME__
6
#ifndef __SQLITE_DATAFRAME__
7
#define __SQLITE_DATAFRAME__
7
#define __SQLITE_DATAFRAME__
8
 
8
 
9
#define WORKSPACE_COLUMNS 5
9
#define WORKSPACE_COLUMNS 6
10
#ifndef WIN32
10
#ifndef WIN32
11
#define MAX_ATTACHED 30     /* 31 including workspace.db */
11
#define MAX_ATTACHED 30     /* 31 including workspace.db */
12
#else
12
#else
13
#define MAX_ATTACHED 10     /* set to 10 until I have recompiled it to 30 */
13
#define MAX_ATTACHED 10     /* set to 10 until I have recompiled it to 30 */
14
#endif
14
#endif
15
 
15
 
16
/* utilities for checking characteristics of arg */
16
/* utilities for checking characteristics of arg */
17
int _is_r_sym(char *sym);
17
int _is_r_sym(char *sym);
18
int _file_exists(char *filename);
18
int _file_exists(char *filename);
19
int _sdf_exists2(char *iname);
19
int _sdf_exists2(char *iname);
20
 
20
 
21
/* sdf utilities */
21
/* sdf utilities */
22
int USE_SDF1(const char *iname, int exists);  /* call this before doing anything on an SDF */
22
int USE_SDF1(const char *iname, int exists, int protect);  /* call this before doing anything on an SDF */
-
 
23
int UNUSE_SDF2(const char *iname); /* somewhat like UNPROTECT */
23
SEXP _create_sdf_sexp(const char *iname);  /* create a SEXP for an SDF */
24
SEXP _create_sdf_sexp(const char *iname);  /* create a SEXP for an SDF */
24
int _add_sdf1(char *filename, char *internal_name); /* add SDF to workspace */
25
int _add_sdf1(char *filename, char *internal_name); /* add SDF to workspace */
25
void _delete_sdf2(const char *iname); /* remove SDF from workspace */
26
void _delete_sdf2(const char *iname); /* remove SDF from workspace */
26
int _get_factor_levels1(const char *iname, const char *varname, SEXP var);
27
int _get_factor_levels1(const char *iname, const char *varname, SEXP var);
27
int _get_row_count2(const char *table, int quote);
28
int _get_row_count2(const char *table, int quote);
28
SEXP _get_rownames(const char *sdf_iname);
29
SEXP _get_rownames(const char *sdf_iname);
29
char *_get_full_pathname2(char *relpath); /* get full path given relpath, used in workspace mgmt */
30
char *_get_full_pathname2(char *relpath); /* get full path given relpath, used in workspace mgmt */
-
 
31
int _is_factor2(const char *iname, const char *factor_type, const char *colname);
-
 
32
SEXP _get_rownames2(const char *sdf_iname);
30
 
33
 
31
/* utilities for creating SDF's */
34
/* utilities for creating SDF's */
32
char *_create_sdf_skeleton1(SEXP name, int *o_namelen);
35
char *_create_sdf_skeleton1(SEXP name, int *o_namelen, int protect);
33
int _copy_factor_levels2(const char *factor_type, const char *iname_src,
36
int _copy_factor_levels2(const char *factor_type, const char *iname_src,
34
        const char *colname_src, const char *iname_dst, const char *colname_dst);
37
        const char *colname_src, const char *iname_dst, const char *colname_dst);
35
int _create_factor_table2(const char *iname, const char *factor_type, 
38
int _create_factor_table2(const char *iname, const char *factor_type, 
36
        const char *colname);
39
        const char *colname);
-
 
40
char *_create_svector1(SEXP name, const char *type, int * _namelen, int protect);
37
 
41
 
38
/* R utilities */
42
/* R utilities */
39
SEXP _getListElement(SEXP list, char *varname);
43
SEXP _getListElement(SEXP list, char *varname);
40
SEXP _shrink_vector(SEXP vec, int len); /* shrink vector size */
44
SEXP _shrink_vector(SEXP vec, int len); /* shrink vector size */
41
 
45
 
42
/* sqlite utilities */
46
/* sqlite utilities */
43
int _empty_callback(void *data, int ncols, char **row, char **cols);
47
int _empty_callback(void *data, int ncols, char **row, char **cols);
44
int _sqlite_error_check(int res, const char *file, int line);
48
int _sqlite_error_check(int res, const char *file, int line);
45
const char *_get_column_type(const char *class, int type); /* get sqlite type corresponding to R class & type */
49
const char *_get_column_type(const char *class, int type); /* get sqlite type corresponding to R class & type */
46
sqlite3* _is_sqlitedb(char *filename);
50
sqlite3* _is_sqlitedb(char *filename);
47
 
51
 
48
/* global buffer (g_sql_buf) utilities */
52
/* global buffer (g_sql_buf) utilities */
49
int _expand_buf(int i, int size);  /* expand ith buf if size > buf[i].size */
53
int _expand_buf(int i, int size);  /* expand ith buf if size > buf[i].size */
50
 
54
 
51
 
55
 
52
/* sqlite.vector utilities */
56
/* sqlite.vector utilities */
53
SEXP sdf_get_variable(SEXP sdf, SEXP name);
57
SEXP sdf_get_variable(SEXP sdf, SEXP name);
54
SEXP sdf_detach_sdf(SEXP internal_name);
58
SEXP sdf_detach_sdf(SEXP internal_name);
55
 
59
 
56
/* workspace utilities */
60
/* workspace utilities */
57
int _prepare_attach2();  /* prepare workspace before attaching a sqlite db */
61
int _prepare_attach2();  /* prepare workspace before attaching a sqlite db */
58
 
62
 
59
/* misc utilities */
63
/* misc utilities */
60
char *_r2iname(char *internal_name, char *filename);
64
char *_r2iname(char *internal_name, char *filename);
61
char *_fixname(char *rname);
65
char *_fixname(char *rname);
62
char *_str_tolower(char *out, const char *ref);
66
char *_str_tolower(char *out, const char *ref);
63
 
67
 
64
/* register functions to sqlite */
68
/* register functions to sqlite */
65
void __register_vector_math();
69
void __register_vector_math();
66
 
70
 
67
#define _sqlite_exec(sql) sqlite3_exec(g_workspace, sql, _empty_callback, NULL, NULL)
71
#define _sqlite_exec(sql) sqlite3_exec(g_workspace, sql, _empty_callback, NULL, NULL)
68
#define _sqlite_error(sql) _sqlite_error_check((sql), __FILE__, __LINE__)
72
#define _sqlite_error(res) _sqlite_error_check((res), __FILE__, __LINE__)
-
 
73
 
-
 
74
#ifdef __SQLITE_DEBUG__
-
 
75
#define _sqlite_begin  { _sqlite_error(_sqlite_exec("begin")); Rprintf("begin at "  __FILE__  " line %d\n",  __LINE__); }
-
 
76
#define _sqlite_commit  { _sqlite_error(_sqlite_exec("commit")); Rprintf("commit at "  __FILE__  " line %d\n",  __LINE__); }
-
 
77
#else
-
 
78
#define _sqlite_begin  _sqlite_error(_sqlite_exec("begin")) 
-
 
79
#define _sqlite_commit _sqlite_error(_sqlite_exec("commit"))
-
 
80
#endif
-
 
81
 
69
#ifndef SET_ROWNAMES
82
#ifndef SET_ROWNAMES
70
#define SET_ROWNAMES(x,n) setAttrib(x, R_RowNamesSymbol, n)
83
#define SET_ROWNAMES(x,n) setAttrib(x, R_RowNamesSymbol, n)
71
#endif
84
#endif
72
 
85
 
73
/* override R's, which does a GetRowNames which is different I believe */
86
/* override R's, which does a GetRowNames which is different I believe */
74
#undef GET_ROWNAMES
87
#undef GET_ROWNAMES
75
#define GET_ROWNAMES(x) getAttrib(x, R_RowNamesSymbol)
88
#define GET_ROWNAMES(x) getAttrib(x, R_RowNamesSymbol)
76
 
89
 
77
/* R object accessors shortcuts */
90
/* R object accessors shortcuts */
78
#define CHAR_ELT(str, i) CHAR(STRING_ELT(str,i))
91
#define CHAR_ELT(str, i) CHAR(STRING_ELT(str,i))
79
 
92
 
80
/* SDF object accessors shortcuts */
93
/* SDF object accessors shortcuts */
81
#define SDF_INAME(sdf) CHAR(STRING_ELT(_getListElement(sdf, "iname"),0))
94
#define SDF_INAME(sdf) CHAR(STRING_ELT(_getListElement(sdf, "iname"),0))
82
#define SVEC_VARNAME(sdf) CHAR(STRING_ELT(_getListElement(sdf, "varname"),0))
95
#define SVEC_VARNAME(sdf) CHAR(STRING_ELT(_getListElement(sdf, "varname"),0))
83
 
96
 
84
/* # of sql buffers */
97
/* # of sql buffers */
85
#define NBUFS 4
98
#define NBUFS 4
86
 
99
 
87
/* possible var types when stored in sqlite as integer */
100
/* possible var types when stored in sqlite as integer */
88
#define VAR_INTEGER 0
101
#define VAR_INTEGER 0
89
#define VAR_FACTOR  1
102
#define VAR_FACTOR  1
90
#define VAR_ORDERED 2
103
#define VAR_ORDERED 2
91
 
104
 
92
/* detail constants (see _get_sdf_detail2 in sqlite_workspace.c) */
105
/* detail constants (see _get_sdf_detail2 in sqlite_workspace.c) */
93
#define SDF_DETAIL_EXISTS 0
106
#define SDF_DETAIL_EXISTS 0
94
#define SDF_DETAIL_FULLFILENAME 1
107
#define SDF_DETAIL_FULLFILENAME 1
95
 
108
 
96
/* R SXP type constants */
109
/* R SXP type constants */
97
#define FACTORSXP 11
110
#define FACTORSXP 11
98
#define ORDEREDSXP 12
111
#define ORDEREDSXP 12
99
 
112
 
100
#ifndef __SQLITE_WORKSPACE__
113
#ifndef __SQLITE_WORKSPACE__
101
extern sqlite3 *g_workspace;
114
extern sqlite3 *g_workspace;
102
extern char *g_sql_buf[NBUFS];
115
extern char *g_sql_buf[NBUFS];
103
extern int g_sql_buf_sz[NBUFS];
116
extern int g_sql_buf_sz[NBUFS];
104
#endif
117
#endif
105
 
118
 
106
#endif
119
#endif