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#include <stdio.h>
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#include <string.h>
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#include "sqlite_dataframe.h"
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/****************************************************************************
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* UTILITY FUNCTIONS
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****************************************************************************/
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/* if user supplied a name, return that name. otherwise, use the
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* default "data" */
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static int _check_sdf_name(SEXP name, char **rname, char **iname, int *file_idx) {
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int namelen = 0;
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13 |
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/* check if arg name is supplied */
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if (name == R_NilValue) {
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*rname = "data";
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namelen = 5;
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*iname = (char*)R_alloc(13, sizeof(char)); /* data10000.db\0 */
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*file_idx = 1;
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sprintf(*iname, "%s%d.db", *rname, *file_idx);
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} else if (IS_CHARACTER(name)) {
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*rname = CHAR_ELT(name,0);
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if (!_is_r_sym(*rname)) {
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Rprintf("Error: supplied name \"%s\"is not a valid R symbol.\n",
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*rname);
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return FALSE;
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}
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namelen = strlen(*rname);
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*iname = (char*)R_alloc(namelen + 9, sizeof(char)); /* <name>10000.db\0 */
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sprintf(*iname, "%s.db", *rname);
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} else {
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Rprintf("Error: the supplied value for arg name is not a string.\n");
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}
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return namelen;
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}
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static int _find_free_filename(char *rname, char **iname, int *namelen, int *file_idx) {
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do {
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if (!_file_exists(*iname)) break;
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*namelen = sprintf(*iname, "%s%d.db", rname, ++(*file_idx)) - 3;
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} while (*file_idx < 10000);
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return *file_idx;
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}
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/* creates an sdf attribute table */
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static int _create_sdf_attribute2(const char *iname) {
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sprintf(g_sql_buf[2], "create table [%s].sdf_attributes(attr text, "
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"value text, primary key (attr))", iname);
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int res;
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res = _sqlite_exec(g_sql_buf[2]);
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if (res == SQLITE_OK) {
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sprintf(g_sql_buf[2], "insert into [%s].sdf_attributes values ('name',"
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"'%s');", iname, iname);
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res = _sqlite_exec(g_sql_buf[2]);
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}
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return res;
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}
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char *_create_sdf_skeleton1(SEXP name, int *onamelen, int protect) {
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char *iname, *rname;
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int namelen, file_idx = 0, res;
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namelen = _check_sdf_name(name, &rname, &iname, &file_idx);
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if (!namelen) return NULL;
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_find_free_filename(rname, &iname, &namelen, &file_idx);
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if (file_idx >= 10000) {
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Rprintf("Error: cannot find free SDF name.\n");
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return NULL;
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}
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/* add to workspace */
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strcpy(g_sql_buf[3], iname);
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iname[namelen] = 0; /* remove ".db" */
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res = _add_sdf1(g_sql_buf[3], iname);
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if (_sqlite_error(res)) return NULL;
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/* detach SDF's if necessary to attach this one. if file does not
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* exist, then a sqlite db will be created after we make our 1st table */
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if (!USE_SDF1(iname, FALSE, protect)) { /* _delete_sdf2(iname); */ return NULL; }
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/* create attributes table */
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res = _create_sdf_attribute2(iname);
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if (_sqlite_error(res)) {
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sprintf(g_sql_buf[2], "detach '%s'", iname);
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_delete_sdf2(iname);
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return NULL;
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}
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if (onamelen) *onamelen = namelen;
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return iname;
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}
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/* checks if a column has a corresponding factor|ordered table */
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int _is_factor2(const char *iname, const char *factor_type, const char *colname) {
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sqlite3_stmt *stmt;
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sprintf(g_sql_buf[2], "select * from [%s].[%s %s]", iname, factor_type,
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colname);
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int res;
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res = sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt, 0);
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sqlite3_finalize(stmt);
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return res == SQLITE_OK;
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}
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/* create a factor|ordered table */
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int _create_factor_table2(const char *iname, const char *factor_type,
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const char *colname) {
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sqlite3_stmt *stmt;
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sprintf(g_sql_buf[2], "create table [%s].[%s %s] (level int, label text, "
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"primary key(level), unique(label));", iname, factor_type, colname);
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int res;
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res = sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt, 0);
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if (res == SQLITE_OK) sqlite3_step(stmt);
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sqlite3_finalize(stmt);
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return res; /* error on dup name? */
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}
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/* copy a factor|ordered table from a sdf(db) to another sdf(db) */
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int _copy_factor_levels2(const char *factor_type, const char *iname_src,
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const char *colname_src, const char *iname_dst, const char *colname_dst) {
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sqlite3_stmt *stmt;
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int res;
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res = _create_factor_table2(iname_dst, factor_type, colname_dst);
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if (res == SQLITE_OK) {
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sprintf(g_sql_buf[2], "insert into [%s].[%s %s] select * from [%s].[%s %s]",
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iname_src, factor_type, colname_src, iname_dst, factor_type,
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colname_dst);
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res = sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt, 0);
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if (res == SQLITE_OK) sqlite3_step(stmt);
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sqlite3_finalize(stmt);
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}
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return res; /* error on dup name? */
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}
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/* assumes stmt has col_cnt + 1 columns, col 0 is [row name]. returned SEXP is
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* not UNPROTECT-ed, user will have to do that. will create the names &
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* attach factor infos */
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static SEXP _setup_df_sexp1(sqlite3_stmt *stmt, const char *iname,
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int col_cnt, int row_cnt, int *dup_indices) {
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SEXP ret, names, value, class = R_NilValue;
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int i, type;
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const char *colname, *coltype;
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PROTECT(ret = NEW_LIST(col_cnt));
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/* set up names. */
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PROTECT(names = NEW_CHARACTER(col_cnt));
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for (i = 0; i < col_cnt; i++) {
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colname = sqlite3_column_name(stmt, i+1); /* +1 bec [row name is 0] */
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coltype = sqlite3_column_decltype(stmt, i+1);
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if (dup_indices[i] == 0) {
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strcpy(g_sql_buf[1], colname);
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} else {
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sprintf(g_sql_buf[1], "%s.%d", colname, dup_indices[i]);
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}
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SET_STRING_ELT(names, i, mkChar(g_sql_buf[1]));
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if (strcmp(coltype, "text") == 0) {
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PROTECT(value = NEW_CHARACTER(row_cnt));
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} else if (strcmp(coltype, "double") == 0) {
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PROTECT(value = NEW_NUMERIC(row_cnt));
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} else if (strcmp(coltype, "bit") == 0) {
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PROTECT(value = NEW_LOGICAL(row_cnt));
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} else if (strcmp(coltype, "integer") == 0 ||
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strcmp(coltype, "int") == 0) {
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PROTECT(value = NEW_INTEGER(row_cnt));
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type = _get_factor_levels1(iname, colname, value);
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if (type == VAR_FACTOR) {
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PROTECT(class = mkString("factor"));
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SET_CLASS(value, class);
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177 |
UNPROTECT(1);
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} else if (type == VAR_ORDERED) {
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PROTECT(class = NEW_CHARACTER(2));
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180 |
SET_STRING_ELT(class, 0, mkChar("ordered"));
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SET_STRING_ELT(class, 1, mkChar("factor"));
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182 |
SET_CLASS(value, class);
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183 |
UNPROTECT(1);
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184 |
}
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185 |
} else {
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186 |
Rprintf("Error: not supported type %s for %s\n", coltype, colname);
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187 |
UNPROTECT(2); /* unprotect ret, names */
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188 |
return R_NilValue;
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}
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190 |
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191 |
SET_VECTOR_ELT(ret, i, value);
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UNPROTECT(1); /* unprotect value */
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}
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SET_NAMES(ret, names);
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UNPROTECT(1); /* unprotect names only */
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return ret;
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198 |
}
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199 |
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/* expected that 1st col of stmt is [row name], so we start with index 1 */
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201 |
static int _add_row_to_df(SEXP df, sqlite3_stmt *stmt, int row, int ncols) {
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SEXP vec;
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int type = -1, is_null, i;
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for (i = 1; i <= ncols; i++) {
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205 |
vec = VECTOR_ELT(df, i-1);
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206 |
type = TYPEOF(vec);
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207 |
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208 |
is_null = (sqlite3_column_type(stmt, row) == SQLITE_NULL);
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209 |
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210 |
if (type == CHARSXP) {
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211 |
SET_STRING_ELT(vec, row, mkChar((char *)sqlite3_column_text(stmt, i)));
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} else if (type == INTSXP) {
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213 |
INTEGER(vec)[row] = sqlite3_column_int(stmt, i);
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214 |
} else if (type == REALSXP) {
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215 |
REAL(vec)[row] = sqlite3_column_double(stmt, i);
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216 |
} else if (type == LGLSXP) {
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217 |
LOGICAL(vec)[row] = sqlite3_column_int(stmt, i);
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218 |
}
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}
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return type;
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}
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222 |
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223 |
static void _set_rownames2(SEXP df) {
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224 |
SEXP value = VECTOR_ELT(df, 0);
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225 |
int len = LENGTH(value), i;
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226 |
PROTECT(value = NEW_CHARACTER(len));
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227 |
for (i = 0; i < len; i++) {
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228 |
sprintf(g_sql_buf[2], "%d", i+1);
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229 |
SET_STRING_ELT(value, i, mkChar(g_sql_buf[2]));
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230 |
}
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231 |
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232 |
SET_ROWNAMES(df, value);
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233 |
UNPROTECT(1);
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234 |
}
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235 |
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236 |
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237 |
/****************************************************************************
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238 |
* SDF FUNCTIONS
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239 |
****************************************************************************/
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240 |
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241 |
SEXP sdf_create_sdf(SEXP df, SEXP name) {
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242 |
SEXP ret;
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char *iname;
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244 |
int namelen, res, i, j;
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246 |
/* find free name, attach sdf, create sdf_attributes */
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iname = _create_sdf_skeleton1(name, &namelen, FALSE);
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249 |
if (iname != NULL) {
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250 |
int sql_len, sql_len2;
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251 |
sqlite3_stmt *stmt;
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252 |
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253 |
/* create sdf_data table */
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SEXP names = GET_NAMES(df), variable, levels, var_class;
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int ncols = GET_LENGTH(names), type, *types;
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256 |
char *col_name, *class, *factor;
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257 |
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/* variables for adding rownames */
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259 |
SEXP rownames;
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260 |
int nrows;
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261 |
char *row_name;
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262 |
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263 |
/* TODO: put constraints on table after inserting everything? */
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264 |
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265 |
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266 |
/*
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267 |
* create the create table and insert sql scripts by looping through
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268 |
* the columns of df
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269 |
*/
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270 |
types = (int *)R_alloc(ncols, sizeof(int));
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271 |
sql_len = sprintf(g_sql_buf[0], "create table [%s].sdf_data ([row name] text", iname);
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272 |
sql_len2 = sprintf(g_sql_buf[1], "insert into [%s].sdf_data values(?", iname);
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273 |
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274 |
for (i = 0; i < ncols; i++) {
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275 |
col_name = CHAR(STRING_ELT(names, i));
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276 |
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277 |
/* add column definition to the create table sql */
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278 |
_expand_buf(0, sql_len+strlen(col_name)+10);
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279 |
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280 |
variable = _getListElement(df, col_name);
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281 |
var_class = GET_CLASS(variable);
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282 |
class = (var_class == R_NilValue) ? NULL : CHAR(STRING_ELT(var_class, 0));
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283 |
type = TYPEOF(variable);
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284 |
types[i] = type;
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285 |
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286 |
sql_len += sprintf(g_sql_buf[0]+sql_len, ", [%s] %s", col_name,
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287 |
_get_column_type(class, type));
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288 |
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289 |
/* add handler to insert table sql */
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290 |
_expand_buf(1, sql_len+5);
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291 |
strcpy(g_sql_buf[1]+sql_len2, ",?");
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292 |
sql_len2 += 2;
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293 |
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294 |
/* create separate table for factors decode */
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| 3426 |
mrmanese |
295 |
if (class != NULL && (strcmp(class, "factor") == 0 || strcmp(class, "ordered") == 0)){
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| 3255 |
mrmanese |
296 |
if (_create_factor_table2(iname, class, col_name))
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297 |
return R_NilValue; /* dup tbl name? */
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| 3252 |
mrmanese |
298 |
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| 3397 |
mrmanese |
299 |
_sqlite_exec("begin");
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| 3252 |
mrmanese |
300 |
levels = GET_LEVELS(variable);
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| 3255 |
mrmanese |
301 |
sprintf(g_sql_buf[2], "insert into [%s].[%s %s] values(?, ?);",
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302 |
iname, class, col_name);
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303 |
res = sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt, NULL);
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| 3252 |
mrmanese |
304 |
if (_sqlite_error(res)) return R_NilValue; /* dup tbl name? */
|
|
|
305 |
|
|
|
306 |
for (j = 0; j < GET_LENGTH(levels); j++) {
|
|
|
307 |
sqlite3_reset(stmt);
|
|
|
308 |
factor = CHAR(STRING_ELT(levels, j));
|
|
|
309 |
sqlite3_bind_int(stmt, 1, j+1);
|
| 3307 |
mrmanese |
310 |
sqlite3_bind_text(stmt, 2, factor, -1, SQLITE_STATIC);
|
| 3252 |
mrmanese |
311 |
sqlite3_step(stmt);
|
|
|
312 |
}
|
|
|
313 |
sqlite3_finalize(stmt);
|
| 3397 |
mrmanese |
314 |
_sqlite_exec("commit");
|
| 3252 |
mrmanese |
315 |
}
|
|
|
316 |
}
|
|
|
317 |
|
|
|
318 |
_expand_buf(0,sql_len+35);
|
| 3419 |
mrmanese |
319 |
sql_len += sprintf(g_sql_buf[0]+sql_len, ", primary key([row name]));");
|
|
|
320 |
/* sql_len += sprintf(g_sql_buf[0]+sql_len, ");"); */
|
| 3252 |
mrmanese |
321 |
res = _sqlite_exec(g_sql_buf[0]);
|
|
|
322 |
if (_sqlite_error(res)) return R_NilValue; /* why? */
|
|
|
323 |
|
|
|
324 |
/*
|
|
|
325 |
* add the data in df to the sdf
|
|
|
326 |
*/
|
| 3324 |
mrmanese |
327 |
rownames = getAttrib(df, R_RowNamesSymbol);
|
|
|
328 |
nrows = GET_LENGTH(rownames);
|
| 3252 |
mrmanese |
329 |
|
| 3397 |
mrmanese |
330 |
_sqlite_error(_sqlite_exec("begin"));
|
| 3255 |
mrmanese |
331 |
sprintf(g_sql_buf[1]+sql_len2, ")");
|
|
|
332 |
res = sqlite3_prepare(g_workspace, g_sql_buf[1], -1, &stmt, NULL);
|
| 3252 |
mrmanese |
333 |
|
|
|
334 |
for (i = 0; i < nrows; i++) {
|
|
|
335 |
sqlite3_reset(stmt);
|
|
|
336 |
|
| 3324 |
mrmanese |
337 |
/* since this is coming from a real dataframe, we're assured that
|
|
|
338 |
* the rownames are unique */
|
|
|
339 |
if (IS_CHARACTER(rownames)) {
|
|
|
340 |
row_name = CHAR(STRING_ELT(rownames, i));
|
|
|
341 |
if (*row_name) /* if not empty string */
|
|
|
342 |
sqlite3_bind_text(stmt, 1, row_name, strlen(row_name), SQLITE_STATIC);
|
|
|
343 |
else sqlite3_bind_int(stmt, 1, i);
|
|
|
344 |
} else if (IS_INTEGER(rownames)) {
|
|
|
345 |
sqlite3_bind_int(stmt, 1, INTEGER(rownames)[i]);
|
|
|
346 |
} else sqlite3_bind_int(stmt, 1, i);
|
| 3252 |
mrmanese |
347 |
|
|
|
348 |
for (j = 0; j < ncols; j++) {
|
|
|
349 |
variable = VECTOR_ELT(df, j);
|
|
|
350 |
switch(types[j]) {
|
|
|
351 |
case INTSXP :
|
|
|
352 |
sqlite3_bind_int(stmt, j+2, INTEGER(variable)[i]);
|
|
|
353 |
break;
|
|
|
354 |
case REALSXP:
|
|
|
355 |
sqlite3_bind_double(stmt, j+2, REAL(variable)[i]);
|
|
|
356 |
break;
|
|
|
357 |
case CHARSXP:
|
|
|
358 |
col_name = CHAR(STRING_ELT(variable,i));
|
|
|
359 |
sqlite3_bind_text(stmt, j+2, col_name, strlen(col_name), SQLITE_STATIC);
|
|
|
360 |
}
|
|
|
361 |
/* TODO: handle NA's & NULL's */
|
|
|
362 |
}
|
|
|
363 |
|
|
|
364 |
res = sqlite3_step(stmt);
|
|
|
365 |
if (res != SQLITE_DONE) {
|
| 3397 |
mrmanese |
366 |
_sqlite_exec("ROLLBACK");
|
| 3252 |
mrmanese |
367 |
sqlite3_finalize(stmt);
|
| 3397 |
mrmanese |
368 |
Rprintf("SQLITE ERROR: %s\n", sqlite3_errmsg(g_workspace));
|
| 3252 |
mrmanese |
369 |
return R_NilValue; /* why? */
|
|
|
370 |
}
|
|
|
371 |
}
|
|
|
372 |
|
|
|
373 |
sqlite3_finalize(stmt);
|
| 3397 |
mrmanese |
374 |
_sqlite_error(_sqlite_exec("COMMIT"));
|
| 3252 |
mrmanese |
375 |
|
| 3308 |
mrmanese |
376 |
/* create a new object representing the sdf */
|
| 3252 |
mrmanese |
377 |
ret = _create_sdf_sexp(iname);
|
|
|
378 |
|
|
|
379 |
} else {
|
| 3308 |
mrmanese |
380 |
Rprintf("ERROR: unable to create a sqlite data frame.\n");
|
| 3252 |
mrmanese |
381 |
ret = R_NilValue;
|
| 3251 |
mrmanese |
382 |
}
|
|
|
383 |
|
| 3252 |
mrmanese |
384 |
return ret;
|
|
|
385 |
}
|
|
|
386 |
|
|
|
387 |
SEXP sdf_get_names(SEXP sdf) {
|
| 3308 |
mrmanese |
388 |
char *iname;
|
|
|
389 |
iname = SDF_INAME(sdf);
|
| 3419 |
mrmanese |
390 |
if (!USE_SDF1(iname, TRUE, FALSE)) return R_NilValue;
|
| 3252 |
mrmanese |
391 |
|
| 3308 |
mrmanese |
392 |
int len;
|
|
|
393 |
len = sprintf(g_sql_buf[0], "select * from [%s].sdf_data;", iname);
|
|
|
394 |
|
| 3252 |
mrmanese |
395 |
sqlite3_stmt *stmt;
|
| 3284 |
mrmanese |
396 |
int res, i;
|
| 3252 |
mrmanese |
397 |
|
|
|
398 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], len, &stmt, NULL);
|
|
|
399 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
400 |
|
|
|
401 |
SEXP ret;
|
|
|
402 |
|
|
|
403 |
len = sqlite3_column_count(stmt)-1;
|
|
|
404 |
PROTECT(ret = NEW_CHARACTER(len));
|
|
|
405 |
|
| 3284 |
mrmanese |
406 |
for (i = 0; i < len; i++) {
|
| 3252 |
mrmanese |
407 |
SET_STRING_ELT(ret, i, mkChar(sqlite3_column_name(stmt, i+1)));
|
|
|
408 |
}
|
|
|
409 |
|
|
|
410 |
sqlite3_finalize(stmt);
|
| 3251 |
mrmanese |
411 |
UNPROTECT(1);
|
|
|
412 |
return ret;
|
|
|
413 |
}
|
|
|
414 |
|
| 3252 |
mrmanese |
415 |
SEXP sdf_get_length(SEXP sdf) {
|
| 3308 |
mrmanese |
416 |
char *iname;
|
|
|
417 |
iname = CHAR(STRING_ELT(_getListElement(sdf, "iname"),0));
|
| 3419 |
mrmanese |
418 |
if (!USE_SDF1(iname, TRUE, FALSE)) return R_NilValue;
|
| 3308 |
mrmanese |
419 |
|
| 3252 |
mrmanese |
420 |
int len = sprintf(g_sql_buf[0], "select * from [%s].sdf_data;", iname);
|
| 3251 |
mrmanese |
421 |
|
| 3252 |
mrmanese |
422 |
sqlite3_stmt *stmt;
|
|
|
423 |
int res;
|
|
|
424 |
|
|
|
425 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], len, &stmt, NULL);
|
|
|
426 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
427 |
|
|
|
428 |
SEXP ret;
|
|
|
429 |
|
|
|
430 |
len = sqlite3_column_count(stmt)-1;
|
|
|
431 |
PROTECT(ret = NEW_INTEGER(1));
|
|
|
432 |
INTEGER(ret)[0] = len;
|
|
|
433 |
|
|
|
434 |
sqlite3_finalize(stmt);
|
|
|
435 |
UNPROTECT(1);
|
|
|
436 |
return ret;
|
|
|
437 |
}
|
|
|
438 |
|
| 3255 |
mrmanese |
439 |
/* get row count */
|
|
|
440 |
SEXP sdf_get_row_count(SEXP sdf) {
|
| 3252 |
mrmanese |
441 |
char *iname = CHAR(STRING_ELT(_getListElement(sdf, "iname"),0));
|
| 3419 |
mrmanese |
442 |
if (!USE_SDF1(iname, TRUE, FALSE)) return R_NilValue;
|
| 3308 |
mrmanese |
443 |
|
| 3358 |
mrmanese |
444 |
int nrow;
|
| 3252 |
mrmanese |
445 |
SEXP ret;
|
|
|
446 |
|
| 3358 |
mrmanese |
447 |
nrow = _get_row_count2(iname, TRUE);
|
| 3252 |
mrmanese |
448 |
|
| 3358 |
mrmanese |
449 |
if (nrow < 1) ret = R_NilValue;
|
| 3252 |
mrmanese |
450 |
else {
|
|
|
451 |
PROTECT(ret = NEW_INTEGER(1));
|
| 3358 |
mrmanese |
452 |
INTEGER(ret)[0] = nrow;
|
| 3252 |
mrmanese |
453 |
UNPROTECT(1);
|
|
|
454 |
}
|
|
|
455 |
|
|
|
456 |
return ret;
|
|
|
457 |
}
|
|
|
458 |
|
|
|
459 |
|
| 3255 |
mrmanese |
460 |
SEXP sdf_import_table(SEXP _filename, SEXP _name, SEXP _sep, SEXP _quote,
|
|
|
461 |
SEXP _rownames, SEXP _colnames) {
|
|
|
462 |
char *filename = CHAR_ELT(_filename, 0);
|
|
|
463 |
FILE *f = fopen(filename, "r");
|
| 3252 |
mrmanese |
464 |
|
| 3255 |
mrmanese |
465 |
if (f == NULL) {
|
|
|
466 |
Rprintf("Error: File %s does not exist.", filename);
|
|
|
467 |
return R_NilValue;
|
|
|
468 |
}
|
| 3252 |
mrmanese |
469 |
|
| 3282 |
mrmanese |
470 |
/*char *sep = CHAR_ELT(_sep, 0), *quote = CHAR_ELT(_quote,0);
|
|
|
471 |
char *name = CHAR_ELT(_name, 0);*/
|
| 3252 |
mrmanese |
472 |
|
| 3255 |
mrmanese |
473 |
/* create the table */
|
|
|
474 |
/* insert the stuffs */
|
|
|
475 |
/* register to workspace */
|
|
|
476 |
|
|
|
477 |
return R_NilValue;
|
|
|
478 |
}
|
|
|
479 |
|
|
|
480 |
SEXP sdf_get_index(SEXP sdf, SEXP row, SEXP col) {
|
| 3282 |
mrmanese |
481 |
SEXP ret = R_NilValue;
|
| 3255 |
mrmanese |
482 |
char *iname = SDF_INAME(sdf);
|
| 3419 |
mrmanese |
483 |
if (!USE_SDF1(iname, TRUE, TRUE)) return R_NilValue;
|
| 3308 |
mrmanese |
484 |
|
| 3282 |
mrmanese |
485 |
sqlite3_stmt *stmt;
|
| 3281 |
mrmanese |
486 |
int buflen = 0, idxlen, col_cnt, row_cnt, index;
|
| 3255 |
mrmanese |
487 |
int i, j,res;
|
|
|
488 |
int *col_indices, col_index_len, *dup_indices;
|
| 3282 |
mrmanese |
489 |
int row_index_len = 0;
|
| 3255 |
mrmanese |
490 |
|
| 3281 |
mrmanese |
491 |
sprintf(g_sql_buf[0], "select * from [%s].sdf_data ", iname);
|
| 3255 |
mrmanese |
492 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
|
|
|
493 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
494 |
|
|
|
495 |
buflen = sprintf(g_sql_buf[0], "select [row name]");
|
|
|
496 |
idxlen = LENGTH(col);
|
|
|
497 |
col_cnt = sqlite3_column_count(stmt) - 1;
|
|
|
498 |
|
|
|
499 |
/*
|
|
|
500 |
* PROCESS COLUMN INDEX
|
|
|
501 |
*/
|
| 3281 |
mrmanese |
502 |
if (col == R_NilValue) {
|
| 3255 |
mrmanese |
503 |
for (i = 1; i < col_cnt+1; i++) {
|
| 3281 |
mrmanese |
504 |
buflen += sprintf(g_sql_buf[0]+buflen, ",[%s]",
|
| 3255 |
mrmanese |
505 |
sqlite3_column_name(stmt, i));
|
|
|
506 |
}
|
| 3281 |
mrmanese |
507 |
_expand_buf(0, buflen+20+strlen(iname));
|
|
|
508 |
buflen += sprintf(g_sql_buf[0]+buflen, " from [%s].sdf_data", iname);
|
|
|
509 |
col_index_len = col_cnt;
|
|
|
510 |
col_indices = (int *)R_alloc(idxlen, sizeof(int));
|
|
|
511 |
dup_indices = (int *)R_alloc(idxlen, sizeof(int));
|
|
|
512 |
for (i = 0; i < col_cnt; i++) { col_indices[i] = i; dup_indices[i] = 0; }
|
| 3255 |
mrmanese |
513 |
} else if (col == R_NilValue || idxlen < 1) {
|
|
|
514 |
sqlite3_finalize(stmt);
|
|
|
515 |
return R_NilValue;
|
|
|
516 |
} else if (IS_NUMERIC(col)) {
|
|
|
517 |
col_indices = (int *)R_alloc(idxlen, sizeof(int));
|
|
|
518 |
dup_indices = (int *)R_alloc(idxlen, sizeof(int));
|
|
|
519 |
col_index_len = 0;
|
|
|
520 |
|
|
|
521 |
for (i = 0; i < idxlen; i++) {
|
|
|
522 |
/* no need to correct for 0 base because col 0 is [row name] */
|
|
|
523 |
index = ((int) REAL(col)[i]);
|
|
|
524 |
if (index > col_cnt) {
|
|
|
525 |
sqlite3_finalize(stmt);
|
|
|
526 |
Rprintf("Error: undefined columns selected\n");
|
|
|
527 |
return R_NilValue;
|
|
|
528 |
} else if (index > 0) {
|
| 3281 |
mrmanese |
529 |
buflen += sprintf(g_sql_buf[0]+buflen, ",[%s]",
|
| 3255 |
mrmanese |
530 |
sqlite3_column_name(stmt,index));
|
|
|
531 |
dup_indices[col_index_len] = 0;
|
|
|
532 |
for (j = 0; j < col_index_len; j++) {
|
|
|
533 |
if (col_indices[j] == index) dup_indices[col_index_len]++;
|
|
|
534 |
}
|
|
|
535 |
col_indices[col_index_len++] = index;
|
|
|
536 |
} else if (index < 0) {
|
|
|
537 |
sqlite3_finalize(stmt);
|
|
|
538 |
Rprintf("Error: negative indices not supported.\n");
|
|
|
539 |
return R_NilValue;
|
|
|
540 |
}
|
|
|
541 |
}
|
|
|
542 |
|
|
|
543 |
if (col_index_len == 0) {
|
|
|
544 |
sqlite3_finalize(stmt);
|
|
|
545 |
Rprintf("Error: no indices detected??\n");
|
|
|
546 |
return R_NilValue;
|
| 3281 |
mrmanese |
547 |
} else {
|
|
|
548 |
_expand_buf(0, buflen+20+strlen(iname));
|
|
|
549 |
buflen += sprintf(g_sql_buf[0]+buflen, " from [%s].sdf_data", iname);
|
| 3255 |
mrmanese |
550 |
}
|
|
|
551 |
} else if (IS_INTEGER(col)) {
|
|
|
552 |
/* identical logic with IS_NUMERIC, except that we don't have to cast
|
|
|
553 |
* stuffs from SEXP col. the alternative is doing if idxlen times. */
|
|
|
554 |
col_indices = (int *)R_alloc(idxlen, sizeof(int));
|
|
|
555 |
dup_indices = (int *)R_alloc(idxlen, sizeof(int));
|
|
|
556 |
col_index_len = 0;
|
|
|
557 |
|
|
|
558 |
for (i = 0; i < idxlen; i++) {
|
|
|
559 |
/* no need to correct for 0 base because col 0 is [row name] */
|
|
|
560 |
index = INTEGER(col)[i];
|
|
|
561 |
if (index > col_cnt) {
|
|
|
562 |
sqlite3_finalize(stmt);
|
|
|
563 |
Rprintf("Error: undefined columns selected\n");
|
|
|
564 |
return R_NilValue;
|
|
|
565 |
} else if (index > 0) {
|
| 3281 |
mrmanese |
566 |
buflen += sprintf(g_sql_buf[0]+buflen, ",[%s]",
|
| 3255 |
mrmanese |
567 |
sqlite3_column_name(stmt,index));
|
|
|
568 |
dup_indices[col_index_len] = 0;
|
|
|
569 |
for (j = 0; j < col_index_len; j++) {
|
|
|
570 |
if (col_indices[j] == index) dup_indices[col_index_len]++;
|
|
|
571 |
}
|
|
|
572 |
col_indices[col_index_len++] = index;
|
|
|
573 |
} else if (index < 0) {
|
|
|
574 |
sqlite3_finalize(stmt);
|
|
|
575 |
Rprintf("Error: negative indices not supported.\n");
|
|
|
576 |
return R_NilValue;
|
|
|
577 |
}
|
|
|
578 |
}
|
|
|
579 |
|
|
|
580 |
if (col_index_len == 0) {
|
|
|
581 |
sqlite3_finalize(stmt);
|
|
|
582 |
Rprintf("Error: no indices detected??\n");
|
|
|
583 |
return R_NilValue;
|
| 3281 |
mrmanese |
584 |
} else {
|
|
|
585 |
_expand_buf(0, buflen+20+strlen(iname));
|
|
|
586 |
buflen += sprintf(g_sql_buf[0]+buflen, " from [%s].sdf_data", iname);
|
| 3255 |
mrmanese |
587 |
}
|
|
|
588 |
} else if (IS_LOGICAL(col)) {
|
|
|
589 |
/* recycling stuff, so max column output is the # of cols in the df */
|
|
|
590 |
col_indices = (int *)R_alloc(col_cnt, sizeof(int));
|
|
|
591 |
dup_indices = (int *)R_alloc(col_cnt, sizeof(int));
|
|
|
592 |
col_index_len = 0;
|
|
|
593 |
for (i = 0; i < col_cnt; i++) {
|
|
|
594 |
if (LOGICAL(col)[i%idxlen]) {
|
| 3281 |
mrmanese |
595 |
buflen += sprintf(g_sql_buf[0]+buflen, ",[%s]",
|
| 3255 |
mrmanese |
596 |
sqlite3_column_name(stmt,i+1));
|
|
|
597 |
dup_indices[col_index_len] = 0;
|
|
|
598 |
col_indices[col_index_len++] = i;
|
|
|
599 |
}
|
|
|
600 |
}
|
|
|
601 |
|
|
|
602 |
if (col_index_len == 0) {
|
|
|
603 |
sqlite3_finalize(stmt);
|
|
|
604 |
Rprintf("Warning: no column selected.\n");
|
|
|
605 |
return R_NilValue;
|
| 3281 |
mrmanese |
606 |
} else {
|
|
|
607 |
_expand_buf(0, buflen+20+strlen(iname));
|
|
|
608 |
buflen += sprintf(g_sql_buf[0]+buflen, " from [%s].sdf_data", iname);
|
| 3255 |
mrmanese |
609 |
}
|
|
|
610 |
} else {
|
|
|
611 |
sqlite3_finalize(stmt);
|
|
|
612 |
Rprintf("Error: don't know how to handle column index.\n");
|
|
|
613 |
return R_NilValue;
|
|
|
614 |
}
|
|
|
615 |
|
|
|
616 |
/*
|
|
|
617 |
* PROCESS ROW INDEX
|
|
|
618 |
*/
|
|
|
619 |
idxlen = LENGTH(row);
|
| 3281 |
mrmanese |
620 |
if (row == R_NilValue) {
|
|
|
621 |
if (col_index_len == 1) {
|
|
|
622 |
ret = sdf_get_variable(sdf, mkString(sqlite3_column_name(stmt,col_indices[0])));
|
|
|
623 |
sqlite3_finalize(stmt);
|
|
|
624 |
return ret;
|
|
|
625 |
} if (col_index_len > 1) {
|
| 3255 |
mrmanese |
626 |
/* create a new SDF, logic similar to sdf_create_sdf */
|
|
|
627 |
|
|
|
628 |
/* find a new name. data<n> ? */
|
| 3307 |
mrmanese |
629 |
char *iname2;
|
| 3281 |
mrmanese |
630 |
const char *colname;
|
| 3307 |
mrmanese |
631 |
int namelen, sql_len, sql_len2;
|
| 3255 |
mrmanese |
632 |
|
| 3419 |
mrmanese |
633 |
iname2 = _create_sdf_skeleton1(R_NilValue, &namelen, TRUE);
|
| 3255 |
mrmanese |
634 |
|
|
|
635 |
/* create sdf_data table */
|
| 3281 |
mrmanese |
636 |
sql_len = sprintf(g_sql_buf[1], "create table [%s].sdf_data ([row name] text", iname2);
|
|
|
637 |
sql_len2 = 0;
|
| 3255 |
mrmanese |
638 |
|
|
|
639 |
for (i = 0; i < col_index_len; i++) {
|
|
|
640 |
colname = sqlite3_column_name(stmt, col_indices[i]);
|
|
|
641 |
if (dup_indices[i] == 0) {
|
| 3281 |
mrmanese |
642 |
sql_len += sprintf(g_sql_buf[1]+sql_len, ", [%s] %s", colname,
|
| 3255 |
mrmanese |
643 |
sqlite3_column_decltype(stmt, col_indices[i]));
|
|
|
644 |
} else {
|
|
|
645 |
/* un-duplicate col names by appending num, just like R */
|
| 3281 |
mrmanese |
646 |
sql_len += sprintf(g_sql_buf[1]+sql_len, ", [%s.%d] %s", colname,
|
| 3255 |
mrmanese |
647 |
dup_indices[i],
|
|
|
648 |
sqlite3_column_decltype(stmt, col_indices[i]));
|
|
|
649 |
}
|
|
|
650 |
|
|
|
651 |
/* deal with possibly factor columns */
|
|
|
652 |
if (_is_factor2(iname, "factor", colname)) {
|
|
|
653 |
/* found a factor column */
|
| 3281 |
mrmanese |
654 |
|
| 3255 |
mrmanese |
655 |
if (dup_indices[i] == 0) {
|
|
|
656 |
_copy_factor_levels2("factor", iname, colname, iname2, colname);
|
|
|
657 |
} else {
|
|
|
658 |
sprintf(g_sql_buf[3], "%s.%d", colname, dup_indices[i]);
|
|
|
659 |
_copy_factor_levels2("factor", iname, colname, iname2,
|
|
|
660 |
g_sql_buf[3]);
|
|
|
661 |
}
|
|
|
662 |
}
|
|
|
663 |
|
|
|
664 |
/* and deal with ordered factors too... life is hard, then you die */
|
|
|
665 |
if (_is_factor2(iname, "ordered", colname)) {
|
| 3281 |
mrmanese |
666 |
|
| 3255 |
mrmanese |
667 |
if (dup_indices[i] == 0) {
|
|
|
668 |
_copy_factor_levels2("ordered", iname, colname, iname2,
|
|
|
669 |
colname);
|
|
|
670 |
} else {
|
|
|
671 |
sprintf(g_sql_buf[3], "%s.%d", colname, dup_indices[i]);
|
|
|
672 |
_copy_factor_levels2("ordered", iname, colname, iname2,
|
|
|
673 |
g_sql_buf[3]);
|
|
|
674 |
}
|
|
|
675 |
}
|
|
|
676 |
|
|
|
677 |
}
|
|
|
678 |
|
|
|
679 |
/* don't need it anymore */
|
|
|
680 |
sqlite3_finalize(stmt);
|
|
|
681 |
|
|
|
682 |
/* no table index created, that's for v2 I hope*/
|
|
|
683 |
sql_len += sprintf(g_sql_buf[1]+sql_len, ");");
|
|
|
684 |
res = _sqlite_exec(g_sql_buf[1]);
|
| 3281 |
mrmanese |
685 |
if (_sqlite_error(res)) { Rprintf("here? %s\n", g_sql_buf[1]); return R_NilValue; }
|
| 3255 |
mrmanese |
686 |
|
|
|
687 |
/* insert data (with row names). buf[0] contains a select */
|
|
|
688 |
sprintf(g_sql_buf[1], "insert into [%s].sdf_data %s", iname2,
|
|
|
689 |
g_sql_buf[0]);
|
|
|
690 |
res = _sqlite_exec(g_sql_buf[1]);
|
|
|
691 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
692 |
|
|
|
693 |
/* add new sdf to workspace */
|
|
|
694 |
sprintf(g_sql_buf[0], "%s.db", iname2);
|
| 3281 |
mrmanese |
695 |
res = _add_sdf1(g_sql_buf[0], iname2);
|
| 3255 |
mrmanese |
696 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
697 |
|
| 3419 |
mrmanese |
698 |
/* remove protection */
|
|
|
699 |
UNUSE_SDF2(iname2);
|
|
|
700 |
|
| 3255 |
mrmanese |
701 |
/* create SEXP for the SDF */
|
|
|
702 |
ret = _create_sdf_sexp(iname2);
|
| 3281 |
mrmanese |
703 |
return ret;
|
| 3255 |
mrmanese |
704 |
} else { sqlite3_finalize(stmt); return R_NilValue; }
|
|
|
705 |
} else if (row == R_NilValue || idxlen < 1) {
|
|
|
706 |
sqlite3_finalize(stmt);
|
|
|
707 |
return R_NilValue;
|
|
|
708 |
} else if (IS_NUMERIC(row)) {
|
|
|
709 |
sqlite3_finalize(stmt);
|
|
|
710 |
|
| 3281 |
mrmanese |
711 |
sprintf(g_sql_buf[1], "[%s].sdf_data", iname);
|
| 3358 |
mrmanese |
712 |
row_cnt = _get_row_count2(g_sql_buf[1], 0);
|
| 3281 |
mrmanese |
713 |
|
| 3255 |
mrmanese |
714 |
/* append " limit ?,1" to the formed select statement */
|
|
|
715 |
_expand_buf(0, buflen+10);
|
| 3281 |
mrmanese |
716 |
buflen += sprintf(g_sql_buf[0]+buflen, " limit ?,1");
|
|
|
717 |
/*Rprintf("sql [%d]: %s\n", buflen, g_sql_buf[0]); */
|
| 3255 |
mrmanese |
718 |
|
| 3281 |
mrmanese |
719 |
index = ((int) REAL(row)[0]) - 1;
|
| 3255 |
mrmanese |
720 |
if (idxlen < 0 && idxlen == 1) return R_NilValue;
|
|
|
721 |
|
|
|
722 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
|
|
|
723 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
724 |
|
|
|
725 |
sqlite3_bind_int(stmt, 1, index);
|
|
|
726 |
res = sqlite3_step(stmt);
|
|
|
727 |
|
|
|
728 |
/* create data frame */
|
| 3281 |
mrmanese |
729 |
ret = _setup_df_sexp1(stmt, iname, col_index_len, idxlen, dup_indices);
|
|
|
730 |
if (ret == R_NilValue) { sqlite3_finalize(stmt); return R_NilValue; }
|
| 3255 |
mrmanese |
731 |
|
| 3281 |
mrmanese |
732 |
/* put data in it */
|
|
|
733 |
if (index >= 0 && index < row_cnt) {
|
|
|
734 |
_add_row_to_df(ret, stmt, row_index_len++, col_index_len);
|
|
|
735 |
}
|
| 3255 |
mrmanese |
736 |
|
| 3281 |
mrmanese |
737 |
for (i = 1; i < idxlen; i++) {
|
|
|
738 |
sqlite3_reset(stmt);
|
|
|
739 |
index = ((int) REAL(row)[i]) - 1;
|
|
|
740 |
if (index >= 0 && index < row_cnt) {
|
|
|
741 |
sqlite3_bind_int(stmt, 1, index);
|
|
|
742 |
res = sqlite3_step(stmt);
|
|
|
743 |
_add_row_to_df(ret, stmt, row_index_len++, col_index_len);
|
|
|
744 |
}
|
|
|
745 |
}
|
|
|
746 |
sqlite3_finalize(stmt);
|
|
|
747 |
|
|
|
748 |
/* shrink vectors */
|
|
|
749 |
if (row_index_len < idxlen) {
|
|
|
750 |
for (i = 0; i < col_index_len; i++) {
|
|
|
751 |
SET_VECTOR_ELT(ret, i,
|
|
|
752 |
_shrink_vector(VECTOR_ELT(ret, i), row_index_len));
|
|
|
753 |
}
|
|
|
754 |
}
|
|
|
755 |
|
|
|
756 |
UNPROTECT(1); /* for the ret from _setup_df_sexp1 */
|
|
|
757 |
} else if (IS_INTEGER(row)) {
|
|
|
758 |
/* same stuff as with IS_INTEGER, except for setting of var index*/
|
|
|
759 |
sqlite3_finalize(stmt);
|
|
|
760 |
|
|
|
761 |
sprintf(g_sql_buf[1], "[%s].sdf_data", iname);
|
| 3358 |
mrmanese |
762 |
row_cnt = _get_row_count2(g_sql_buf[1], 0);
|
| 3281 |
mrmanese |
763 |
|
|
|
764 |
/* append " limit ?,1" to the formed select statement */
|
|
|
765 |
_expand_buf(0, buflen+10);
|
|
|
766 |
buflen += sprintf(g_sql_buf[0]+buflen, " limit ?,1");
|
|
|
767 |
|
|
|
768 |
index = INTEGER(row)[0] - 1;
|
|
|
769 |
if (idxlen < 0 && idxlen == 1) return R_NilValue;
|
|
|
770 |
|
|
|
771 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
|
|
|
772 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
773 |
|
|
|
774 |
sqlite3_bind_int(stmt, 1, index);
|
|
|
775 |
res = sqlite3_step(stmt);
|
|
|
776 |
|
|
|
777 |
/* create data frame */
|
|
|
778 |
ret = _setup_df_sexp1(stmt, iname, col_index_len, idxlen, dup_indices);
|
|
|
779 |
if (ret == R_NilValue) { sqlite3_finalize(stmt); return R_NilValue; }
|
|
|
780 |
|
| 3255 |
mrmanese |
781 |
/* put data in it */
|
| 3281 |
mrmanese |
782 |
if (index >= 0 && index < row_cnt) {
|
|
|
783 |
_add_row_to_df(ret, stmt, row_index_len++, col_index_len);
|
|
|
784 |
}
|
|
|
785 |
|
|
|
786 |
for (i = 1; i < idxlen; i++) {
|
|
|
787 |
sqlite3_reset(stmt);
|
|
|
788 |
index = INTEGER(row)[i] - 1;
|
|
|
789 |
if (index >= 0 && index < row_cnt) {
|
|
|
790 |
sqlite3_bind_int(stmt, 1, index);
|
|
|
791 |
res = sqlite3_step(stmt);
|
|
|
792 |
_add_row_to_df(ret, stmt, row_index_len++, col_index_len);
|
|
|
793 |
}
|
|
|
794 |
}
|
|
|
795 |
sqlite3_finalize(stmt);
|
|
|
796 |
|
|
|
797 |
/* shrink vectors */
|
|
|
798 |
if (row_index_len < idxlen) {
|
|
|
799 |
for (i = 0; i < col_index_len; i++) {
|
|
|
800 |
SET_VECTOR_ELT(ret, i,
|
|
|
801 |
_shrink_vector(VECTOR_ELT(ret, i), row_index_len));
|
|
|
802 |
}
|
|
|
803 |
}
|
|
|
804 |
UNPROTECT(1); /* for the ret from _setup_df_sexp1 */
|
| 3255 |
mrmanese |
805 |
} else if (IS_LOGICAL(row)) {
|
|
|
806 |
/* */
|
| 3281 |
mrmanese |
807 |
sqlite3_finalize(stmt);
|
|
|
808 |
int est_row_cnt = 0;
|
|
|
809 |
|
|
|
810 |
sprintf(g_sql_buf[1], "[%s].sdf_data", iname);
|
| 3358 |
mrmanese |
811 |
row_cnt = _get_row_count2(g_sql_buf[1], 0);
|
| 3281 |
mrmanese |
812 |
|
|
|
813 |
/* append " limit ?,1" to the formed select statement */
|
|
|
814 |
_expand_buf(0, buflen+10);
|
|
|
815 |
buflen += sprintf(g_sql_buf[0]+buflen, " limit ?,1");
|
|
|
816 |
|
|
|
817 |
/* find if there is any TRUE element in the vector */
|
| 3282 |
mrmanese |
818 |
for (i = 0; i < idxlen && i < row_cnt; i++) {
|
| 3281 |
mrmanese |
819 |
if (LOGICAL(row)[i]) break;
|
|
|
820 |
}
|
|
|
821 |
|
| 3282 |
mrmanese |
822 |
if (i < idxlen && i < row_cnt) {
|
| 3281 |
mrmanese |
823 |
est_row_cnt = (idxlen-i) * (row_cnt/idxlen);
|
|
|
824 |
if (row_cnt%idxlen > i) est_row_cnt += (row_cnt%idxlen - i);
|
|
|
825 |
|
|
|
826 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, 0);
|
|
|
827 |
if (_sqlite_error(res)) return R_NilValue;
|
|
|
828 |
|
|
|
829 |
sqlite3_bind_int(stmt, 1, i);
|
|
|
830 |
sqlite3_step(stmt);
|
|
|
831 |
ret = _setup_df_sexp1(stmt, iname, col_index_len, est_row_cnt, dup_indices);
|
|
|
832 |
_add_row_to_df(ret, stmt, row_index_len++, col_index_len);
|
|
|
833 |
|
|
|
834 |
for (i++ ; i < row_cnt; i++) {
|
|
|
835 |
if (LOGICAL(row)[i%idxlen]) {
|
|
|
836 |
sqlite3_reset(stmt);
|
|
|
837 |
sqlite3_bind_int(stmt, 1, i);
|
|
|
838 |
sqlite3_step(stmt);
|
|
|
839 |
_add_row_to_df(ret, stmt, row_index_len++, col_index_len);
|
|
|
840 |
}
|
|
|
841 |
}
|
|
|
842 |
}
|
|
|
843 |
|
|
|
844 |
sqlite3_finalize(stmt);
|
|
|
845 |
|
|
|
846 |
/* shrink vectors */
|
|
|
847 |
if (est_row_cnt > 0 && row_index_len < est_row_cnt) {
|
|
|
848 |
for (i = 0; i < col_index_len; i++) {
|
|
|
849 |
SET_VECTOR_ELT(ret, i,
|
|
|
850 |
_shrink_vector(VECTOR_ELT(ret, i), row_index_len));
|
|
|
851 |
}
|
|
|
852 |
}
|
|
|
853 |
|
|
|
854 |
UNPROTECT(1); /* for the ret from _setup_df_sexp1 */
|
| 3255 |
mrmanese |
855 |
}
|
|
|
856 |
|
| 3419 |
mrmanese |
857 |
UNUSE_SDF2(iname);
|
|
|
858 |
|
| 3281 |
mrmanese |
859 |
if (ret != R_NilValue && col_index_len > 1) {
|
|
|
860 |
SEXP class = mkString("data.frame");
|
|
|
861 |
SET_CLASS(ret, class);
|
|
|
862 |
_set_rownames2(ret);
|
|
|
863 |
} else if (ret != R_NilValue && col_index_len == 1) {
|
|
|
864 |
ret = VECTOR_ELT(ret, 0);
|
|
|
865 |
}
|
| 3255 |
mrmanese |
866 |
|
|
|
867 |
return ret;
|
|
|
868 |
}
|
|
|
869 |
|
| 3324 |
mrmanese |
870 |
SEXP sdf_rbind(SEXP sdf, SEXP data) {
|
| 3358 |
mrmanese |
871 |
char *class = CHAR_ELT(GET_CLASS(data), 0);
|
|
|
872 |
char *iname = SDF_INAME(sdf), *colname, *rowname;
|
|
|
873 |
SEXP ret = R_NilValue, col, names, levels, rownames;
|
|
|
874 |
int ncols, buflen, buflen2, i, j, res, nrows, *types;
|
| 3324 |
mrmanese |
875 |
sqlite3_stmt *stmt;
|
| 3358 |
mrmanese |
876 |
const char *type;
|
| 3281 |
mrmanese |
877 |
|
| 3324 |
mrmanese |
878 |
if (strcmp(class,"data.frame") == 0) {
|
|
|
879 |
/* check table names, types. variables may not be in same order, as
|
|
|
880 |
* long as names and types are identical. */
|
|
|
881 |
names = GET_NAMES(data);
|
| 3358 |
mrmanese |
882 |
ncols = GET_LENGTH(names);
|
| 3324 |
mrmanese |
883 |
|
|
|
884 |
buflen = sprintf(g_sql_buf[0], "select 1");
|
| 3358 |
mrmanese |
885 |
for (i = 0; i < ncols; i++) {
|
| 3324 |
mrmanese |
886 |
_expand_buf(0, buflen + 100);
|
|
|
887 |
buflen += sprintf(g_sql_buf[0]+buflen, ",[%s]", CHAR_ELT(names, i));
|
|
|
888 |
}
|
|
|
889 |
_expand_buf(0, buflen + 100);
|
| 3358 |
mrmanese |
890 |
sprintf(g_sql_buf[0]+buflen, " from [%s].sdf_data", iname);
|
| 3324 |
mrmanese |
891 |
|
|
|
892 |
res = sqlite3_prepare(g_workspace, g_sql_buf[0], -1, &stmt, NULL);
|
|
|
893 |
if (res != SQLITE_OK) { /* column name mismatch */
|
|
|
894 |
Rprintf("Error: column names should exactly match the names of the SDF.\n");
|
|
|
895 |
return ret;
|
|
|
896 |
}
|
|
|
897 |
|
|
|
898 |
/* now check the type */
|
| 3358 |
mrmanese |
899 |
types = (int *)R_alloc(ncols, sizeof(int));
|
|
|
900 |
for (i = 0; i< ncols; i++) {
|
|
|
901 |
type = sqlite3_column_decltype(stmt, i+1); /* +1 bec 1st col is "1" */
|
| 3324 |
mrmanese |
902 |
|
|
|
903 |
col = VECTOR_ELT(data, i);
|
|
|
904 |
class = CHAR_ELT(GET_CLASS(col),0);
|
|
|
905 |
|
| 3358 |
mrmanese |
906 |
if (strcmp(type, "double") == 0 && IS_NUMERIC(col)) types[i] = SQLITE_FLOAT;
|
|
|
907 |
else if (strcmp(type, "text") == 0 && IS_CHARACTER(col)) types[i] = SQLITE_TEXT;
|
|
|
908 |
else if (strcmp(type, "int") == 0) {
|
|
|
909 |
types[i] = SQLITE_INTEGER;
|
|
|
910 |
if (isUnordered(col)) { /* test if factor */
|
|
|
911 |
colname = CHAR_ELT(names, i);
|
| 3324 |
mrmanese |
912 |
sqlite3_stmt *stmt2;
|
|
|
913 |
if (!_is_factor2(iname, "factor", colname)) break;
|
|
|
914 |
sprintf(g_sql_buf[1], "[%s].[factor %s]", iname, colname);
|
| 3358 |
mrmanese |
915 |
nrows = _get_row_count2(g_sql_buf[1], 0);
|
| 3324 |
mrmanese |
916 |
|
| 3358 |
mrmanese |
917 |
/* levels in sdf must be >= levels in df */
|
| 3324 |
mrmanese |
918 |
levels = GET_LEVELS(col);
|
|
|
919 |
if (nrows < GET_LENGTH(levels)) {
|
|
|
920 |
Rprintf("Error: The data frame variable %s has more levels than"
|
|
|
921 |
" its SDF counterpart.\n", colname);
|
|
|
922 |
break;
|
|
|
923 |
}
|
|
|
924 |
|
| 3358 |
mrmanese |
925 |
sprintf(g_sql_buf[2], "select label from %s order by level", g_sql_buf[1]);
|
|
|
926 |
res = sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt2, NULL);
|
|
|
927 |
_sqlite_error(res);
|
| 3324 |
mrmanese |
928 |
|
| 3358 |
mrmanese |
929 |
for (j = 0; j < GET_LENGTH(levels); j++) {
|
| 3324 |
mrmanese |
930 |
sqlite3_step(stmt2);
|
| 3358 |
mrmanese |
931 |
if (strcmp((char *)sqlite3_column_text(stmt2, 0), CHAR_ELT(levels, j)) != 0) {
|
| 3324 |
mrmanese |
932 |
Rprintf("Error: Level label mismatch in variable %s, [%s] in data frame"
|
|
|
933 |
" vs [%s] in SDF.\n", colname, (char *)sqlite3_column_text(stmt2, 0),
|
|
|
934 |
CHAR_ELT(levels, j));
|
| 3358 |
mrmanese |
935 |
sqlite3_finalize(stmt2);
|
| 3324 |
mrmanese |
936 |
break;
|
|
|
937 |
}
|
|
|
938 |
}
|
| 3358 |
mrmanese |
939 |
sqlite3_finalize(stmt2);
|
|
|
940 |
} else if (isOrdered(col)) { /* same with ordered */
|
|
|
941 |
colname = CHAR_ELT(names, i);
|
| 3324 |
mrmanese |
942 |
sqlite3_stmt *stmt2;
|
|
|
943 |
if (!_is_factor2(iname, "ordered", colname)) break;
|
|
|
944 |
sprintf(g_sql_buf[1], "[%s].[ordered %s]", iname, colname);
|
| 3358 |
mrmanese |
945 |
nrows = _get_row_count2(g_sql_buf[1], 0);
|
| 3324 |
mrmanese |
946 |
|
| 3358 |
mrmanese |
947 |
/* levels in sdf must be >= levels in df */
|
| 3324 |
mrmanese |
948 |
levels = GET_LEVELS(col);
|
|
|
949 |
if (nrows < GET_LENGTH(levels)) {
|
|
|
950 |
Rprintf("Error: The data frame variable %s has more levels than"
|
|
|
951 |
" its SDF counterpart.\n", colname);
|
|
|
952 |
break;
|
|
|
953 |
}
|
|
|
954 |
|
| 3358 |
mrmanese |
955 |
sprintf(g_sql_buf[2], "select label from %s order by level", g_sql_buf[1]);
|
| 3324 |
mrmanese |
956 |
sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt2, NULL);
|
|
|
957 |
|
| 3358 |
mrmanese |
958 |
for (j = 0; j < GET_LENGTH(levels); j++) {
|
| 3324 |
mrmanese |
959 |
sqlite3_step(stmt2);
|
| 3358 |
mrmanese |
960 |
if (strcmp((char *)sqlite3_column_text(stmt2, 0), CHAR_ELT(levels, j)) != 0) {
|
| 3324 |
mrmanese |
961 |
Rprintf("Error: Level label mismatch in variable %s, [%s] in data frame"
|
|
|
962 |
" vs [%s] in SDF.\n", colname, (char *)sqlite3_column_text(stmt2, 0),
|
|
|
963 |
CHAR_ELT(levels, j));
|
| 3358 |
mrmanese |
964 |
sqlite3_finalize(stmt2);
|
| 3324 |
mrmanese |
965 |
break;
|
|
|
966 |
}
|
|
|
967 |
}
|
| 3358 |
mrmanese |
968 |
sqlite3_finalize(stmt2);
|
| 3324 |
mrmanese |
969 |
} /* else if class == "ordered" */
|
|
|
970 |
} /* if integer */
|
|
|
971 |
} /* for loop for column type checking */
|
|
|
972 |
|
| 3358 |
mrmanese |
973 |
sqlite3_finalize(stmt);
|
|
|
974 |
if (i < ncols) {
|
| 3324 |
mrmanese |
975 |
Rprintf("Error: type mismatch at variable %s\n", CHAR_ELT(names, i));
|
|
|
976 |
return ret;
|
|
|
977 |
}
|
|
|
978 |
|
|
|
979 |
/* create the insert statement */
|
|
|
980 |
buflen = sprintf(g_sql_buf[0], "insert into [%s].sdf_data([row name]", iname);
|
|
|
981 |
buflen2 = sprintf(g_sql_buf[1], "values(?");
|
| 3358 |
mrmanese |
982 |
for (i = 0; i < ncols; i++) {
|
| 3324 |
mrmanese |
983 |
_expand_buf(0, buflen+100);
|
|
|
984 |
buflen += sprintf(g_sql_buf[0]+buflen, ",[%s]", CHAR_ELT(names, i));
|
|
|
985 |
_expand_buf(1, buflen2+5);
|
|
|
986 |
buflen2 += sprintf(g_sql_buf[1]+buflen2, ",?");
|
|
|
987 |
}
|
|
|
988 |
|
|
|
989 |
_expand_buf(2, buflen + buflen2 + 10);
|
| 3358 |
mrmanese |
990 |
sprintf(g_sql_buf[2], "%s) %s)", g_sql_buf[0], g_sql_buf[1]);
|
| 3324 |
mrmanese |
991 |
res = sqlite3_prepare(g_workspace, g_sql_buf[2], -1, &stmt, NULL);
|
|
|
992 |
if (_sqlite_error(res)) return ret;
|
|
|
993 |
|
|
|
994 |
/* finally, add rows */
|
|
|
995 |
nrows = LENGTH(GET_ROWNAMES(data));
|
| 3358 |
mrmanese |
996 |
rownames = GET_ROWNAMES(data);
|
| 3324 |
mrmanese |
997 |
|
| 3397 |
mrmanese |
998 |
_sqlite_exec("begin");
|
| 3324 |
mrmanese |
999 |
for (i = 0; i < nrows; i++) {
|
| 3358 |
mrmanese |
1000 |
sqlite3_bind_text(stmt, 1, CHAR_ELT(rownames, i), -1, SQLITE_STATIC);
|
|
|
1001 |
for (j = 0; j < ncols; j++) {
|
|
|
1002 |
col = VECTOR_ELT(data, j);
|
|
|
1003 |
switch(types[j]) {
|
|
|
1004 |
case SQLITE_FLOAT:
|
|
|
1005 |
sqlite3_bind_double(stmt, j+2, REAL(col)[i]); break;
|
|
|
1006 |
case SQLITE_TEXT:
|
|
|
1007 |
sqlite3_bind_text(stmt, j+2, CHAR_ELT(col, i), -1, SQLITE_STATIC); break;
|
|
|
1008 |
case SQLITE_INTEGER:
|
|
|
1009 |
default: /* runtime error if we're wrong */
|
|
|
1010 |
sqlite3_bind_int(stmt, j+2, INTEGER(col)[i]); break;
|
|
|
1011 |
}
|
|
|
1012 |
}
|
|
|
1013 |
|
|
|
1014 |
res = sqlite3_step(stmt);
|
|
|
1015 |
if (res != SQLITE_DONE) { /* row name pk conflict */
|
|
|
1016 |
rowname = CHAR_ELT(rownames, i);
|
|
|
1017 |
for (j = 1; res != SQLITE_DONE; j++) { /* _normally_, j shouldn't overflow */
|
|
|
1018 |
sqlite3_reset(stmt);
|
|
|
1019 |
sprintf(g_sql_buf[2], "%s-%d", rowname, j);
|
|
|
1020 |
sqlite3_bind_text(stmt, 1, g_sql_buf[2], -1, SQLITE_STATIC);
|
|
|
1021 |
res = sqlite3_step(stmt);
|
|
|
1022 |
}
|
|
|
1023 |
}
|
|
|
1024 |
sqlite3_reset(stmt);
|
| 3324 |
mrmanese |
1025 |
}
|
|
|
1026 |
|
| 3358 |
mrmanese |
1027 |
sqlite3_finalize(stmt);
|
| 3397 |
mrmanese |
1028 |
_sqlite_exec("begin");
|
| 3358 |
mrmanese |
1029 |
ret = sdf;
|
| 3324 |
mrmanese |
1030 |
} else if (strcmp(class,"sqlite.data.frame") == 0) {
|
|
|
1031 |
}
|
|
|
1032 |
|
|
|
1033 |
return ret;
|
|
|
1034 |
}
|
|
|
1035 |
|
|
|
1036 |
|
| 3358 |
mrmanese |
1037 |
SEXP sdf_get_iname(SEXP sdf) {
|
|
|
1038 |
return _getListElement(sdf, "iname");
|
|
|
1039 |
}
|