The R Project SVN R-packages

Rev

Rev 7756 | Blame | Compare with Previous | Last modification | View Log | Download | RSS feed

<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
<html> <head>
<title>FAQ for RCurl</title>
<link rel="stylesheet" href="../OmegaTech.css"/>
</head>

<body>
<h1>Installation</h1>

<dl>

  <dt>
  <li> I tried to install the package, but it fails. What's wrong?
  <dd> Very hard to tell without more information!

  <dt>
  <li> Okay, I'll tell you more about how the package failed to
  install.
       It said something about not finding curl-config and then gave
         a line something like
<pre>
   ERROR: configuration failed for package 'RCurl'
</pre>      
      
  <dd> (Mostly for UNIX/Linux/Mac OS X users)
      So this seems pretty clear. R is telling you that the
  <underline>configuration</underline> for RCurl failed. 
        So you need to think about how it is configured.
         The fact that it couldn't find curl-config should
      suggest the problem.  And what it means is
      that one or more of the following is true
      <ul>
    <li> curl-config is not found in your path
    <li> curl-config and related devlopment libraries (libcurl)
          are not installed.
      </ul>
   So you need to make certain that libcurl is available.
       Do something like <code>locate libcurl</code> and see
      if it returns something like libcurl.so in the lines it
      emits. Alternatively, do
      <code>locate curl-config</code> and see if it is present.
      <p/>
      If libcurl is not installed, use your binary package manager
      to install the curl-dev package. This is different from
      the curl package which is the command-line tool
      for using curl to download files. We need the "linkable" library.
      On Ubuntu, for example, you can use
<pre>
sudo apt-get install libcurl4-openssl-dev
</pre>      
  
  <dt>
  <li> What version of libcurl do I need?
  <dd>
      I have only tested this back to versions of libcurl at 7.11.2.
      I would use the most recent version of libcurl.
      You can download the versions from
      <a href="https://curl.se/download.html">https://curl.se/download.html</a>.
      
  <dt>
  <li> I get errors about <code>CURLOPT_HTTPAUTH</code>
      not being defined when the C code is being compiled.
      What's the problem?
  <dd>
      The version of libcurl is important. I have developed this
      package using curl-7.12. You should download and install that.
      If this becomes a problem, we can perform tests as to what
      features are available at installation time and customize
      to that.

  <dt> I get errors about such as
<pre>
 url.c: In function `RCurlVersionInfoToR':
 curl.c:613: structure has no member named `libidn'
 curl.c:613: structure has no member named `libidn'
</pre>

      <dd> Again, this is a version of libcurl problem.  We have seen
      this with curl-7.11.2.  Again, we want curl-7.12!  However,
      I have added a test for this in the code so that this
      problem doesn't arise.
      The libidn field will be NA if there is no such field in the
      version structure.  If it is present but empty, we return "". </dl>


      <dt>
      <li> I get errors about things not being defined, even basic
      curl  structures, etc. What's the problem?
      <dd>
      Possibly, you are not using GNU make.
      The Makevars file in the src/ directory
      uses some GNU make constructs.
      Please set the environment variable
      MAKE to gmake.
       </dd>
</dl>


<h1>Runtime</h1>
<dl>

 <dt>
 <li> I have to specify followlocation = TRUE for all my requests. Why can't RCurl just do this for me.
 <dd>
   The reason RCurl doesn't set default values for Curl options is because it might be confusing.
  Instead, we leave it to the R user/programmer to explicitly set any of the options she wants.
  This can be repetitive. To avoid this repetition, we allow the R user to specify
  the R option named "RCurlOptions".  This is consulted in each request (or specifically when we create a new curl handle)
   and merged with the values specified explicitly in the call. 
<pre>
  options(RCurlOptions = list(verbose = TRUE, followlocation = TRUE, timeout = 100, useragent = "myApp in R"))
  v = getURLContent("http://www.omegahat.net")
</pre>
With this, we can see that our useragent  appears in the HTTP header of the request.
We see this since the verbose = TRUE shows the header of the request and the response.

 <dt>
 <li> Why doesn't RCurl provide a default value for the useragent that some sites require?
 <dd>
  This is a matter of philosophy. Firstly, libcurl doesn't specify a default value
 and it is a framework for others to build applications. Similarly, RCurl is a general
 framework for R programmers to create applications to make "Web" requests.
 Accordingly, we don't set the user agent either.  We expect the R programmer to do this.
 R programmers using RCurl in an R package to make requests to a site should use
 the package name (and also the version of R) as the user agent and specify this in all requests.
 <p>
 Basically, we expect others to specify a meaningful value for useragent so that they identify themselves
 correctly.
 <p>
 Note that users (not recommended for programmers) can set 
 the R option named RCurlOptions via R's option() function.
 The value should be a list of named curl options. This is used in each RCurl request
 merging these values with those specified in the call.  This allows one to provide
 default values.

 <dt>
 <li> I try to retrieve a page, but getURLContent() and getURL() both just hang.
 I have to kill the R session. What is the problem? What can I do?
 <dd>
 First thing to do is to check whether this a problem on the server.
You can do this by  loading the URL in a Web browser or via a command-line
tool such as curl or wget.
  If this does not succeed, then the problem is most likely with the server.
  <p>

    There are a couple of things that come to mind. Firstly, specify
  a value for the curl option "useragent" and give it something meaningful to identify your application.
  Hopefully adding that resolves the problem.  It does in the case
<pre>
getURLContent("https://mtgox.com/code/data/ticker.php", ssl.verifypeer = FALSE, useragent = "R")
</pre>
  <p>
   If that doesn't solve the problem, set a value for the "timeout" option.
<pre>
getURLContent("https://mtgox.com/code/data/ticker.php", timeout = 4, ssl.verifypeer = FALSE)
</pre>
  This will at least cure the "hanging" indefinitely and return within that period of time.


  <dt>
  <li>When I go to a page that is just a directory,
      I get results about "302 Moved Permanently".
      My browser shows the list of files. What's the difference?
  <dd>
      Not entirely certain yet!  But try putting a / at the end of the
      URI, e.g.
      change
<pre>
      http://www.omegahat.net/RCurl
</pre>            
      to
<pre>
      http://www.omegahat.net/RCurl/
</pre>
      That works for me.


  <dt> <li> Why does https not work for me?

  <dd> Probably because when you compiled/installed libcurl, you didn't have support for
  SSL.  You can check this with the command shell
<pre> curl-config  --feature </pre>
      or the R command
<pre>
curlVersion()$features
</pre>
      
  If ssl doesn't appear in either of these, you don't have support
  for it.  You should reinstall curl, having first installed SSL
  (e.g. <a href="https://www.openssl.org/">openssl</a>).


  <dt>
  <li> I'm trying to use RCurl to do something in R that works
      in a Web browser and I can even reproduce using the
      command line program <b>curl</b>.
      (That's a big help as we know we are both using libcurl!)
      But when I do things in R, it fails. What's the problem
      and how can I fix it?
  <dd>
      Well, there are too many potential reasons
      and we would need to have more information about what
      you are attempting to do and what the error messages are.
      But for one, you might look at authentication
      and activating Basic authentication, e.g
      add 
       <code>httpauth = 1L, # "basic"</code>
      to the curl options.
      <p>
       But there is a general approach to trying to figure out how
      to get R to do the same thing as a browser or <b>curl</b>
      or <b>wget</b>.
      One approach is to make certain that both R
      and <b>curl</b> are giving us as much information as possible.
      So make sure both have verbose switched on.
      In R, this is a curl option <code>verbose = TRUE</code>
      and for <b>curl</b>, is is the command line switch -v.
      Then look at the header information both produce and see if
      anything is obviously missing or different in the R version.
      <p>
      A different idea is somewhat advanced, but not very.
      When the browser or <b>curl</b> makes a request,
      it is sent across the network via your operating
      system.
What we want to do is look at the contents of the HTTP request
and specifically the header information.
There are two ways to do this.
If we are doing this in a browser, we can examine the headers in that browser
using browser-specific tools.
Alternatively, if we are doing this via a command line utility
or if we want to do this generally, we can capture all
the network communication using a tool such as tcpdump or wireshark.

<p>
If we want to do this via the browser, we can use the LiveHTTPHeaders extension for
Firefox or the "special" URL  chrome://net-internals  for Google Chrome.
<p>
For command-line/stand-alone tools,
     with the appropriate permissions on the computer,
      we can use a program such as tcpdump or wireshark or ethereal
      to "sniff" or capture the packets as they go across the network
      device and then we can look at them.
       We can do this for the <b>curl</b> or browser
      and then for R and compare what is being sent.
      This allows us to see the headers as we can with the
      verbose options, but it also allows us to see the
      content of the body of the request. This is only important
      for POST requests.
      <p>
      We should also note that if you are using HTTPS, the body will
      be encrypted and you won't be able to make any sense of it.
      However, if the data in the post are not sensitive, you can
      send it via HTTP - not HTTPS - and curl and the Web browser
      will do the same thing and we will be able to see the contents.
      The server will likely be confused and upset and give an error,
      but we are trying  to determine the problem on the initial
      client request so that is not a problem.
      (It is a problem if we are trying to understand why R is not
       handling the response correctly, but that's a different problem.)
      <p>

       How do we use tcpdump and ethereal?
First, start tcpdump just before you run the R or <b>curl</b> command
<pre>
sudo /usr/sbin/tcpdump -s 1518 -i eth1 -w r_packets.tcp
</pre>
If you do this and wait too long, you will capture all the background
packets that are flying through your network interface that have
nothing to do with your problem. This is not a problem, but it makes
it harder to find the packets which we want to examine.
<p>
So next, go back to R or <b>curl</b> and run the command.
When this has completed, kill the tcpdump process, e.g
Ctrl-C in the terminal in which it is running or kill with the
relevant process id (see the <b>ps</b> command or the Mac activity
monoitor.)
Now run ethereal with the name of the file to which tcpdump serialized the
packets
<pre>
ethereal r_packets.tcp
</pre>
And then you will get a window that looks something like
<img src="ethereal.png"/>
You  navigate the list in the top panel to find the HTTP
entry (#64 in our example).
Click on that and the details of this TCP interaction are displayed
in the lower panel. Then you can expand the elements by clicking
on the lines that have an arrow on the left.
And then you'll see the details of the header and the body.

<p>
If the connection is via SSL, e.g. HTTPS, things are a little more
complicated as the content is encrypted.
There are a variety of ways and tools to deal with this.
Some are (in no particular order)
<ul>
  <li> ssldump
<!--   <li> <a href="http://portswigger.net/suite/">Burp</a>  -->
  <li> <a href="https://www.parosproxy.org/">Paros Proxy</a>
  <li> fiddler (Windows)
  <li> WebScarab (Java)
  <li> Charles (commercial)
  <li> HttpWatch (Windows only, Free and commercial)
</ul>


<dt>
<li> I am trying to use the <code>verbose = TRUE</code>
     option in curlPerform() or some of the other higher-level
    functions,
    but there is no output appearing on the console.
    What's the problem?
<dd>  You're on Windows using the R GUI, aren't you?
    If so, chose the option in one of the menus that
    controls whether output is buffered and unselect it,
    i.e. so the output is <i>not</i> buffered.
    That should do it.

<dt>
<li> I can't use scp or sftp within RCurl but the documentation
    for curl  seems to suggest that it can. So why does RCurl not
    support it?
<dd> RCurl does support it, but the likely problem is that the
    version of libcurl you have installed does not support it.
    You can check what protocols your libcurl and hence RCurl
    supports  via the command <code>curlVersion</code>.
    If scp and sftp are not there, reinstall libcurl but with support
    using libssh2.
    You will need to have the libssh2 development libraries and headers installed before installing libcurl.
    On some OSes, you will need to rebuild RCurl from source.


<dt>
<li> I am trying to download a file via FTP, but it takes a very long time.
  Any suggestions?
<dd>
  We saw this in a posting to
  <!-- <a href="https://stat.ethz.ch/pipermail/r-help/2009-January/184633.html"> -->
    R-help by Zack Holden.
 There the issue was passive mode.  When using R's own download.file() function, an error was raised.
 When using  RCurl's getURL(), the file was correctly downloaded, but it took a long time. There
 was about 3 minutes of delay. This can be seen with
<pre class="rcode">
getURL('ftp://ftp.wcc.nrcs.usda.gov/data/snow/snow_course/table/history/idaho/13e19.txt', 
        verbose = TRUE)
</pre>
One can see the request just waits for a long period of time and then eventually the contents
of the file are displayed in the R session.
<p>
The fix for this is to avoid extended passive mode and  use the regular passive mode.
This is controlled via the ftp.use.epsv option in calls to curlPerform()
and we set this  to FALSE so that PASV is used rather than EPSV.
<pre class="rcode">
getURL('ftp://ftp.wcc.nrcs.usda.gov/data/snow/snow_course/table/history/idaho/13e19.txt', 
        ftp.use.epsv = FALSE)
</pre>


<dt>
<li> I want to download all the files in an FTP directory. How do I do it?
<dd>

First, we can get a list of all the file names with
<pre class="rcode">
url = 'ftp://ftp.wcc.nrcs.usda.gov/data/snow/snow_course/table/history/idaho/'
filenames = getURL(url, ftp.use.epsv = FALSE, ftplistonly = TRUE)
filenames = paste(url, strsplit(filenames, "\n")[[1]], sep = "")
</pre>
Now we can download each of these in turn.
It is advisable to create a curl handle just once and to set any options
before downloading any of the files.
<pre>
con = getCurlHandle( ftp.use.epsv = FALSE)
sapply(filenames, getURL, curl = con)
</pre>


<dt>
<li> When I try to interact with a URL via https, I get an error of
    the form
<pre>
Error in curlPerform(url = url, headerfunction = header$update, curl = curl,  : 
  SSL certificate problem, verify that the CA cert is OK. Details:
error:14090086:SSL routines:SSL3_GET_SERVER_CERTIFICATE:certificate verify failed    
</pre>
    What can I do?
<dd>

    <p>
 Information about this came from
    <a href="http://ademar.name/blog/2006/04/curl-ssl-certificate-problem-v.html">http://ademar.name/blog/2006/04/curl-ssl-certificate-problem-v.html</a>
    </p>

    <p>
Basically, the remote server is sending us a certificate to say it is
    who it says it is.
    However, we have to trust that certificate.
    We do this by providing information about a collection of trusted
    signing authorites, e.g. Verisign, Entrust, Thawte
    We can use the certificates from these agents from the Netscape
    collection, available  via
       <a
    href="https://curl.se/docs/caextract.html">https://curl.se/docs/caextract.html</a>,
    but you can find other collections.
    We download this file or its equivalent.
    Next we need to tell libcurl to use that file and where to find
    it.
    We do this with the cainfo option.
<pre>
x = getURLContent("https://www.google.com",
                  cainfo = "/Users/duncan/cacert.pem")    
</pre>
    Note that we cannot use a ~ in the file path;
    we have to expand it ourselves.
<pre>
x = getURLContent("https://www.google.com",
                  cainfo = path.expand("~/cacert.pem"))
</pre>    
    </p>

    <p>
To avoid having to specify the location of the bundle
in each call, you can place the file in a place
that libcurl looks. This is usually the file
  <b>/usr/local/share/curl/curl-ca-bundle.crt</b>
If you have write permission for this directory, you can place
    the files.    
(The file must be present  before libcurl is configured and compiled.)

</p>
<p>    
On some versions of UNIX, the certificates will also be found in
    /usr/share/ssl/certs/ca-bundle.crt    
    </p>
    <p>
    If you don't have a certificate from an appropriate signing agent,
    you can suppress verifying the certificate with
    the ssl.verifypeer option:
<pre>
x = getURLContent("https://www.google.com",
                   ssl.verifypeer = FALSE)
</pre>
    This does risk a <a href="https://en.wikipedia.org/wiki/Man-in-the-middle_attack">'man in the middle'</a> attack.
    </p>

    <!-- 
    -->


<dt>
<li> I'm trying to POST a request but this fails.
    Does it have anything to do with the %'s in my parameter values?
<dd>
(Taken from a query from Olivier Merle. )
<pre class="rcode">
x = postForm("http://www.fas.usda.gov/psdonline/psdResult.aspx",
             style = "post",
            .params = list(visited="1",
                          lstGroup = "all",
                          lstCommodity="2631000",
                          lstAttribute="88",
                          lstCountry="**",
                          lstDate="2011",
                          lstColumn="Year",
                          lstOrder="Commodity%2FAttribute%2FCountry"))    
</pre>    
This fails with a simple message from the server
that the "Custom Query results" cannot be displayed.
 Note the lstOrder parameter. It has %2F in two places.
 This is the "percent encoding" for the character /.
 postForm does the percent encoding on the inputs
    and so ends up encoding %2F, ending up with
    "%252F" in place of each "%2F".
<p>    
    So, don't pass percent encoded strings, but rather use
    human-readable versions, e.g.
    lstOrder="Commodity/Attribute/Country"
    and leave postForm to handle the encoding.
    Alternatively, you can tell postForm not to
    percent-encode specific parameters by
    passing them As-Is, e.g.
<pre class="rcode">
 lstOrder = I("Commodity%2FAttribute%2FCountry")
</pre>

<dt>
<li> Okay, how do I perform a PUT operation in RCurl?
    
<dd>
    Well here is the lowest-level version:
<pre>
 val = rawToChar(textToSend)
 curlPerform(url = "http://localhost:9200/a/b/axyz", customrequest = "PUT",
              readfunction = val, infilesize = length(val), upload = TRUE)
</pre>
<b>textToSend</b> is the content we want to send.
 We convert it to raw. Then we
    specify the URL, that we want a PUT request,
    and we specify the raw object as the value for
    <b>readfunction</b> and also the
    number of elements in <b>val</b> as the
    value of <b>infilesize</b>.
    The last option - <b>upload</b> - is vital.
    What happens here is that  RCurl
    reads bytes from <b>val</b> as it needs
    to send them to the server.
    <p>
    A slightly shorter way to do this is
<pre>
 httpPUT("http://localhost:9200/a/b/axyz", 
          readfunction = val, infilesize = length(val), upload = TRUE)
</pre>

  From version 1.91-0, you can simply use
<pre>
httpPUT(url, textToSend)
</pre>
    and the function will fill in the other curl options



<dt>
<li> When using authentication in an HTTP request, libcurl makes multiple
    requests.     How can we make this more efficient?
<dd>
    Basically, when we specify a username and password (e.g. via <code
    class="curlopt">userpwd</code>)
    libcurl doesn't know which authentication mechanism to use.
    So it tries several in order until one is successful.
    So it is best to specify the authentication mechanism explicitly
    via <code class="curlopt">httpauth</code>.
    Specify one of the values CURLAUTH_
    
</dl>






<hr>
<address><a href="https://www.stat.ucdavis.edu/~duncan/">Duncan Temple Lang</a>
<a href=mailto:duncan@wald.ucdavis.edu>&lt;duncan@wald.ucdavis.edu&gt;</a></address>
<!-- hhmts start -->
Last modified: Thu May 31 21:08:44 PDT 2012
<!-- hhmts end -->
</body> </html>