R-packages – /trunk/Old/lme4/src/init.c

Rev 7501 – more re-located packages to Old

ripley — Wed, 28 Feb 2018 08:29:15 +0000

ripley – 2 file(s) modified
more re-located packages to Old

x /trunk/lme4
+ /trunk/Old/lme4 (copied from /trunk/lme4@7500)

Rev 4446 – A working nlmer - hooray!

bates — Thu, 07 Jun 2007 21:15:01 +0000

bates – 10 file(s) modified
A working nlmer - hooray!

~ /trunk/lme4/DESCRIPTION
+ /trunk/lme4/man/nlmer-class.Rd
+ /trunk/lme4/man/nlmer.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4436 – Finally got nlmer_bhat running - hooray!

bates — Tue, 05 Jun 2007 21:13:54 +0000

bates – 3 file(s) modified
Finally got nlmer_bhat running - hooray!

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4414 – More modifications to nlmer

bates — Sun, 03 Jun 2007 19:16:42 +0000

bates – 5 file(s) modified
More modifications to nlmer

~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4410 – more work on nlmer

bates — Sat, 02 Jun 2007 16:15:35 +0000

bates – 5 file(s) modified
more work on nlmer

~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4387 – Adding more nlmer capabilities

bates — Fri, 25 May 2007 18:17:40 +0000

bates – 7 file(s) modified
Adding more nlmer capabilities

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4348 – Beginning an nlmer class and constructor

bates — Tue, 15 May 2007 13:47:30 +0000

bates – 3 file(s) modified
Beginning an nlmer class and constructor

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4236 – More on lmer2 version of glmm models

bates — Mon, 02 Apr 2007 21:30:16 +0000

bates – 4 file(s) modified
More on lmer2 version of glmm models

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h
~ /trunk/lme4/src/Syms.h

Rev 4234 – glmm under lmer2 improvements

bates — Mon, 02 Apr 2007 14:38:36 +0000

bates – 4 file(s) modified
glmm under lmer2 improvements

~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4217 – Add lmer2_update_y

bates — Thu, 29 Mar 2007 00:10:43 +0000

bates – 3 file(s) modified
Add lmer2_update_y

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4200 – Modified and simplified lmer2

bates — Sun, 25 Mar 2007 19:35:56 +0000

bates – 7 file(s) modified
Modified and simplified lmer2

~ /trunk/lme4/INDEX
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4188 – Begin moving glmm fitting to mer2 representation

bates — Tue, 20 Mar 2007 22:45:52 +0000

bates – 5 file(s) modified
Begin moving glmm fitting to mer2 representation

~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h

Rev 4185 – Use renamed header and stubs files; Use lmer2_create

bates — Fri, 16 Mar 2007 22:16:41 +0000

bates – 8 file(s) modified
Use renamed header and stubs files; Use lmer2_create

~ /trunk/lme4/INDEX
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h
~ /trunk/lme4/src/local_stubs.c
~ /trunk/lme4/src/Makevars

Rev 4177 – Call port optimization code from with the C code.

bates — Mon, 12 Mar 2007 13:29:16 +0000

bates – 8 file(s) modified
Call port optimization code from with the C code.

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer2.c
~ /trunk/lme4/src/lmer2.h
~ /trunk/lme4/src/local_stubs.c
~ /trunk/lme4/src/Makevars

Rev 4155 – Split lmer.c into lmer.c and lmer2.c

bates — Fri, 16 Feb 2007 22:36:41 +0000

bates – 5 file(s) modified
Split lmer.c into lmer.c and lmer2.c

~ /trunk/lme4/INDEX
~ /trunk/lme4/man/ranef.Rd
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4145 – Clean up representation, add internal_update_A, add validity check

bates — Mon, 12 Feb 2007 01:38:05 +0000

bates – 7 file(s) modified
Clean up representation, add internal_update_A, add validity check

~ /trunk/lme4/INDEX
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h
~ /trunk/lme4/src/Syms.h

Rev 4144 – Change to enum from defines - fix some -Wall warnings

bates — Sun, 11 Feb 2007 00:41:18 +0000

bates – 4 file(s) modified
Change to enum from defines - fix some -Wall warnings

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lme4_utils.h
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4139 – Preparing for mer2_MCMCsamp

bates — Thu, 08 Feb 2007 23:46:07 +0000

bates – 3 file(s) modified
Preparing for mer2_MCMCsamp

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4127 – Added ranef for mer2 representation (including posterior variances)

bates — Sun, 04 Feb 2007 19:40:11 +0000

bates – 5 file(s) modified
Added ranef for mer2 representation (including posterior variances)

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4100 – Incorporate "deviance" argument in mcmcsamp method for glmer objects

bates — Thu, 25 Jan 2007 20:19:13 +0000

bates – 4 file(s) modified
Incorporate "deviance" argument in mcmcsamp method for glmer objects

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/glmer.c
~ /trunk/lme4/src/glmer.h
~ /trunk/lme4/src/init.c

Rev 4089 – Remove bstar element of dims slot in mer2

bates — Sat, 20 Jan 2007 15:24:28 +0000

bates – 2 file(s) modified
Remove bstar element of dims slot in mer2

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/src/init.c

Rev 4073 – Add deviance argument to mcmcsamp method for lmer models

bates — Wed, 10 Jan 2007 13:10:45 +0000

bates – 6 file(s) modified
Add deviance argument to mcmcsamp method for lmer models

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/man/mcmcsamp.Rd
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4068 – Rename slots in mer2 objects; add to vignette

bates — Fri, 05 Jan 2007 21:16:50 +0000

bates – 6 file(s) modified
Rename slots in mer2 objects; add to vignette

~ /trunk/lme4/inst/doc/Implementation.Rnw
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/Syms.h

Rev 4053 – Changed representation of \bm{\Sigma} to outer diag and standard deviation

bates — Sat, 23 Dec 2006 06:22:50 +0000

bates – 6 file(s) modified
Changed representation of \bm{\Sigma} to outer diag and standard deviation

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lme4_utils.h
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h
~ /trunk/lme4/src/Syms.h

Rev 4031 – print, show and other methods for mer2 objects

bates — Fri, 15 Dec 2006 23:19:41 +0000

bates – 5 file(s) modified
print, show and other methods for mer2 objects

~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4021 – Optimization for mer2 objects

bates — Wed, 13 Dec 2006 23:47:12 +0000

bates – 4 file(s) modified
Optimization for mer2 objects

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4020 – Added mer2 extractor functions

bates — Wed, 13 Dec 2006 19:45:23 +0000

bates – 4 file(s) modified
Added mer2 extractor functions

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 4014 – Force LDL simplicial factorization

bates — Mon, 11 Dec 2006 00:18:04 +0000

bates – 1 file(s) modified
Force LDL simplicial factorization

~ /trunk/lme4/src/init.c

Rev 4009 – Switching internal representations - for the last time!

bates — Sat, 09 Dec 2006 00:31:04 +0000

bates – 8 file(s) modified
Switching internal representations - for the last time!

~ /trunk/lme4/inst/doc/Implementation.Rnw
~ /trunk/lme4/inst/doc/lme4.bib
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 3956 – use extern before Syms.h except where they are defined

bates — Mon, 06 Nov 2006 16:27:02 +0000

bates – 2 file(s) modified
use extern before Syms.h except where they are defined

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lme4_utils.h

Rev 3924 – Discounting in carryOver

bates — Mon, 23 Oct 2006 23:02:07 +0000

bates – 4 file(s) modified
Discounting in carryOver

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 3915 – Less space use in bVar calculation

bates — Fri, 20 Oct 2006 23:22:49 +0000

bates – 6 file(s) modified
Less space use in bVar calculation

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c

Rev 3889 – Internal code for predefined family types

bates — Fri, 13 Oct 2006 13:36:05 +0000

bates – 3 file(s) modified
Internal code for predefined family types

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/glmer.c
~ /trunk/lme4/src/init.c

Rev 3886 – Internal evaluation of family functions

bates — Thu, 12 Oct 2006 22:39:25 +0000

bates – 5 file(s) modified
Internal evaluation of family functions

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/glmer.c
~ /trunk/lme4/src/glmer.h
~ /trunk/lme4/src/init.c

Rev 3885 – Divide source code to make navigation easier - new version ...

bates — Thu, 12 Oct 2006 19:21:50 +0000

bates – 12 file(s) modified
Divide source code to make navigation easier - new version number

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
+ /trunk/lme4/src/glmer.c
+ /trunk/lme4/src/glmer.h
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lme4_utils.c
~ /trunk/lme4/src/lme4_utils.h
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h
+ /trunk/lme4/src/Wishart.c
+ /trunk/lme4/src/Wishart.h
+ /trunk/lme4/tests/extras.R

Rev 3870 – New release with extensions carryOver and mlirt to lmer

bates — Wed, 04 Oct 2006 22:43:11 +0000

bates – 7 file(s) modified
New release with extensions carryOver and mlirt to lmer

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lme4_utils.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 3846 – Allow creation of a list of sparse model matrices corresponding ...

bates — Fri, 29 Sep 2006 22:52:49 +0000

bates – 5 file(s) modified
Allow creation of a list of sparse model matrices corresponding to the grouping factors in lmer

~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lme4_utils.c
~ /trunk/lme4/src/lme4_utils.h
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 3845 – Simplify lmer, fix checks

bates — Fri, 29 Sep 2006 21:19:54 +0000

bates – 5 file(s) modified
Simplify lmer, fix checks

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h
~ /trunk/lme4/tests/lmer.R

Rev 3834 – Add functions for the carry-over model. Not yet correct

bates — Thu, 28 Sep 2006 23:24:28 +0000

bates – 4 file(s) modified
Add functions for the carry-over model. Not yet correct

~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h

Rev 3814 – Change nature of status vector, eliminate method slot

bates — Fri, 22 Sep 2006 23:24:18 +0000

bates – 10 file(s) modified
Change nature of status vector, eliminate method slot

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/Done
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/src/init.c
~ /trunk/lme4/src/lmer.c
~ /trunk/lme4/src/lmer.h
~ /trunk/lme4/src/Syms.h