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/* double (precision) TRiangular Matrices */#include "dtrMatrix.h"SEXP triangularMatrix_validate(SEXP obj){SEXP val = GET_SLOT(obj, Matrix_DimSym);if (LENGTH(val) < 2)return mkString(_("'Dim' slot has length less than two"));if (INTEGER(val)[0] != INTEGER(val)[1])return mkString(_("Matrix is not square"));if (isString(val = check_scalar_string(GET_SLOT(obj, Matrix_uploSym),"LU", "uplo"))) return val;if (isString(val = check_scalar_string(GET_SLOT(obj, Matrix_diagSym),"NU", "diag"))) return val;return ScalarLogical(1);}SEXP dtrMatrix_validate(SEXP obj){/* since "dtr" inherits from "triangular", and "dMatrix", only need this:*/return dense_nonpacked_validate(obj);}staticdouble get_norm(SEXP obj, char *typstr){char typnm[] = {'\0', '\0'};int *dims = INTEGER(GET_SLOT(obj, Matrix_DimSym));double *work = (double *) NULL;typnm[0] = norm_type(typstr);if (*typnm == 'I') {work = (double *) R_alloc(dims[0], sizeof(double));}return F77_CALL(dlantr)(typnm, uplo_P(obj), diag_P(obj), dims, dims+1,REAL(GET_SLOT(obj, Matrix_xSym)), dims, work);}SEXP dtrMatrix_norm(SEXP obj, SEXP type){return ScalarReal(get_norm(obj, CHAR(asChar(type))));}SEXP dtrMatrix_rcond(SEXP obj, SEXP type){char typnm[] = {'\0', '\0'};int *dims = INTEGER(GET_SLOT(obj, Matrix_DimSym)), info;double rcond;typnm[0] = rcond_type(CHAR(asChar(type)));F77_CALL(dtrcon)(typnm, uplo_P(obj), diag_P(obj), dims,REAL(GET_SLOT(obj, Matrix_xSym)), dims, &rcond,(double *) R_alloc(3*dims[0], sizeof(double)),(int *) R_alloc(dims[0], sizeof(int)), &info);return ScalarReal(rcond);}SEXP dtrMatrix_solve(SEXP a){SEXP val = PROTECT(duplicate(a));int info, *Dim = INTEGER(GET_SLOT(val, Matrix_DimSym));F77_CALL(dtrtri)(uplo_P(val), diag_P(val), Dim,REAL(GET_SLOT(val, Matrix_xSym)), Dim, &info);UNPROTECT(1);return val;}SEXP dtrMatrix_matrix_solve(SEXP a, SEXP b, SEXP classed){int cl = asLogical(classed);SEXP ans = PROTECT(NEW_OBJECT(MAKE_CLASS("dgeMatrix")));int *adims = INTEGER(GET_SLOT(a, Matrix_DimSym)),*bdims = INTEGER(cl ? GET_SLOT(b, Matrix_DimSym) :getAttrib(b, R_DimSymbol));int n = bdims[0], nrhs = bdims[1];int sz = n * nrhs;double one = 1.0;if (*adims != *bdims || bdims[1] < 1 || *adims < 1 || *adims != adims[1])error(_("Dimensions of system to be solved are inconsistent"));Memcpy(INTEGER(ALLOC_SLOT(ans, Matrix_DimSym, INTSXP, 2)), bdims, 2);F77_CALL(dtrsm)("L", uplo_P(a),"N", diag_P(a),&n, &nrhs, &one, REAL(GET_SLOT(a, Matrix_xSym)), &n,Memcpy(REAL(ALLOC_SLOT(ans, Matrix_xSym, REALSXP, sz)),REAL(cl ? GET_SLOT(b, Matrix_xSym):b), sz), &n);UNPROTECT(1);return ans;}SEXP dtrMatrix_matrix_mm(SEXP a, SEXP b, SEXP classed, SEXP right){int cl = asLogical(classed), rt = asLogical(right);SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("dgeMatrix")));int *adims = INTEGER(GET_SLOT(a, Matrix_DimSym)),*bdims = INTEGER(cl ? GET_SLOT(b, Matrix_DimSym) :getAttrib(b, R_DimSymbol)),*cdims = INTEGER(ALLOC_SLOT(val, Matrix_DimSym, INTSXP, 2));int m, n, sz;double one = 1.;if (!cl && !(isReal(b) && isMatrix(b)))error(_("Argument b must be a numeric matrix"));if (adims[0] != adims[1]) error(_("dtrMatrix in %*% must be square"));m = rt ? bdims[0] : adims[0];n = rt ? adims[1] : bdims[1];if ((rt && (adims[0] != m)) || (!rt && (bdims[0] != m)))error(_("Matrices are not conformable for multiplication"));if (m < 1 || n < 1)error(_("Matrices with zero extents cannot be multiplied"));cdims[0] = m; cdims[1] = n; sz = m * n;F77_CALL(dtrmm)(rt ? "R" : "L", uplo_P(a),"N", diag_P(a), &m, &n,&one, REAL(GET_SLOT(a, Matrix_xSym)), rt ? &n : &m,Memcpy(REAL(ALLOC_SLOT(val, Matrix_xSym, REALSXP, sz)),REAL(cl ? GET_SLOT(b, Matrix_xSym) : b), sz),rt ? &m : &n);UNPROTECT(1);return val;}SEXP dtrMatrix_as_dgeMatrix(SEXP from){SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("dgeMatrix")));SET_SLOT(val, Matrix_xSym, duplicate(GET_SLOT(from, Matrix_xSym)));SET_SLOT(val, Matrix_DimSym, duplicate(GET_SLOT(from, Matrix_DimSym)));SET_SLOT(val, Matrix_DimNamesSym, duplicate(GET_SLOT(from, Matrix_DimNamesSym)));SET_SLOT(val, Matrix_factorSym, allocVector(VECSXP, 0));make_d_matrix_triangular(REAL(GET_SLOT(val, Matrix_xSym)), from);UNPROTECT(1);return val;}SEXP dtrMatrix_as_matrix(SEXP from){int *Dim = INTEGER(GET_SLOT(from, Matrix_DimSym));int m = Dim[0], n = Dim[1];SEXP val = PROTECT(allocMatrix(REALSXP, m, n));make_d_matrix_triangular(Memcpy(REAL(val),REAL(GET_SLOT(from, Matrix_xSym)), m * n),from);setAttrib(val, R_DimNamesSymbol, GET_SLOT(from, Matrix_DimNamesSym));UNPROTECT(1);return val;}SEXP dtrMatrix_getDiag(SEXP x){int i, n = INTEGER(GET_SLOT(x, Matrix_DimSym))[0];SEXP ret = PROTECT(allocVector(REALSXP, n)),xv = GET_SLOT(x, Matrix_xSym);if ('U' == diag_P(x)[0]) {for (i = 0; i < n; i++) REAL(ret)[i] = 1.;} else {for (i = 0; i < n; i++) {REAL(ret)[i] = REAL(xv)[i * (n + 1)];}}UNPROTECT(1);return ret;}SEXP dtrMatrix_dgeMatrix_mm_R(SEXP a, SEXP b){int *adims = INTEGER(GET_SLOT(a, Matrix_DimSym)),*bdims = INTEGER(GET_SLOT(b, Matrix_DimSym)),m = adims[0], n = bdims[1], k = adims[1];SEXP val = PROTECT(duplicate(b));double one = 1.;if (bdims[0] != k)error(_("Matrices are not conformable for multiplication"));if (m < 1 || n < 1 || k < 1)error(_("Matrices with zero extents cannot be multiplied"));F77_CALL(dtrmm)("R", uplo_P(a), "N", diag_P(a), adims, bdims+1, &one,REAL(GET_SLOT(a, Matrix_xSym)), adims,REAL(GET_SLOT(val, Matrix_xSym)), bdims);UNPROTECT(1);return val;}SEXP dtrMatrix_as_dtpMatrix(SEXP from){SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("dtpMatrix"))),uplo = GET_SLOT(from, Matrix_uploSym),diag = GET_SLOT(from, Matrix_diagSym),dimP = GET_SLOT(from, Matrix_DimSym);int n = *INTEGER(dimP);SET_SLOT(val, Matrix_DimSym, duplicate(dimP));SET_SLOT(val, Matrix_diagSym, duplicate(diag));SET_SLOT(val, Matrix_uploSym, duplicate(uplo));full_to_packed_double(REAL(ALLOC_SLOT(val, Matrix_xSym, REALSXP, (n*(n+1))/2)),REAL(GET_SLOT(from, Matrix_xSym)), n,*CHAR(STRING_ELT(uplo, 0)) == 'U' ? UPP : LOW,*CHAR(STRING_ELT(diag, 0)) == 'U' ? UNT : NUN);UNPROTECT(1);return val;}