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#include "cs.h"/* solve U'x=b where x and b are dense. x=b on input, solution on output. */int cs_utsolve (const cs *U, double *x){int p, j, n, *Up, *Ui ;double *Ux ;if (!CS_CSC (U) || !x) return (0) ; /* check inputs */n = U->n ; Up = U->p ; Ui = U->i ; Ux = U->x ;for (j = 0 ; j < n ; j++){for (p = Up [j] ; p < Up [j+1]-1 ; p++){x [j] -= Ux [p] * x [Ui [p]] ;}x [j] /= Ux [Up [j+1]-1] ;}return (1) ;}/* allocate a sparse matrix (triplet form or compressed-column form) */cs *cs_spalloc (int m, int n, int nzmax, int values, int triplet){cs *A = cs_calloc (1, sizeof (cs)) ; /* allocate the cs struct */if (!A) return (NULL) ; /* out of memory */A->m = m ; /* define dimensions and nzmax */A->n = n ;A->nzmax = nzmax = CS_MAX (nzmax, 1) ;A->nz = triplet ? 0 : -1 ; /* allocate triplet or comp.col */A->p = cs_malloc (triplet ? nzmax : n+1, sizeof (int)) ;A->i = cs_malloc (nzmax, sizeof (int)) ;A->x = values ? cs_malloc (nzmax, sizeof (double)) : NULL ;return ((!A->p || !A->i || (values && !A->x)) ? cs_spfree (A) : A) ;}/* change the max # of entries sparse matrix */int cs_sprealloc (cs *A, int nzmax){int ok, oki, okj = 1, okx = 1 ;if (!A) return (0) ;if (nzmax <= 0) nzmax = (CS_CSC (A)) ? (A->p [A->n]) : A->nz ;A->i = cs_realloc (A->i, nzmax, sizeof (int), &oki) ;if (CS_TRIPLET (A)) A->p = cs_realloc (A->p, nzmax, sizeof (int), &okj) ;if (A->x) A->x = cs_realloc (A->x, nzmax, sizeof (double), &okx) ;ok = (oki && okj && okx) ;if (ok) A->nzmax = nzmax ;return (ok) ;}/* free a sparse matrix */cs *cs_spfree (cs *A){if (!A) return (NULL) ; /* do nothing if A already NULL */cs_free (A->p) ;cs_free (A->i) ;cs_free (A->x) ;return (cs_free (A)) ; /* free the cs struct and return NULL */}/* free a numeric factorization */csn *cs_nfree (csn *N){if (!N) return (NULL) ; /* do nothing if N already NULL */cs_spfree (N->L) ;cs_spfree (N->U) ;cs_free (N->pinv) ;cs_free (N->B) ;return (cs_free (N)) ; /* free the csn struct and return NULL */}/* free a symbolic factorization */css *cs_sfree (css *S){if (!S) return (NULL) ; /* do nothing if S already NULL */cs_free (S->pinv) ;cs_free (S->q) ;cs_free (S->parent) ;cs_free (S->cp) ;cs_free (S->leftmost) ;return (cs_free (S)) ; /* free the css struct and return NULL */}/* allocate a cs_dmperm or cs_scc result */csd *cs_dalloc (int m, int n){csd *D ;D = cs_calloc (1, sizeof (csd)) ;if (!D) return (NULL) ;D->p = cs_malloc (m, sizeof (int)) ;D->r = cs_malloc (m+6, sizeof (int)) ;D->q = cs_malloc (n, sizeof (int)) ;D->s = cs_malloc (n+6, sizeof (int)) ;return ((!D->p || !D->r || !D->q || !D->s) ? cs_dfree (D) : D) ;}/* free a cs_dmperm or cs_scc result */csd *cs_dfree (csd *D){if (!D) return (NULL) ; /* do nothing if D already NULL */cs_free (D->p) ;cs_free (D->q) ;cs_free (D->r) ;cs_free (D->s) ;return (cs_free (D)) ;}/* free workspace and return a sparse matrix result */cs *cs_done (cs *C, void *w, void *x, int ok){cs_free (w) ; /* free workspace */cs_free (x) ;return (ok ? C : cs_spfree (C)) ; /* return result if OK, else free it */}/* free workspace and return int array result */int *cs_idone (int *p, cs *C, void *w, int ok){cs_spfree (C) ; /* free temporary matrix */cs_free (w) ; /* free workspace */return (ok ? p : cs_free (p)) ; /* return result if OK, else free it */}/* free workspace and return a numeric factorization (Cholesky, LU, or QR) */csn *cs_ndone (csn *N, cs *C, void *w, void *x, int ok){cs_spfree (C) ; /* free temporary matrix */cs_free (w) ; /* free workspace */cs_free (x) ;return (ok ? N : cs_nfree (N)) ; /* return result if OK, else free it */}/* free workspace and return a csd result */csd *cs_ddone (csd *D, cs *C, void *w, int ok){cs_spfree (C) ; /* free temporary matrix */cs_free (w) ; /* free workspace */return (ok ? D : cs_dfree (D)) ; /* return result if OK, else free it */}/* solve Ux=b where x and b are dense. x=b on input, solution on output. */int cs_usolve (const cs *U, double *x){int p, j, n, *Up, *Ui ;double *Ux ;if (!CS_CSC (U) || !x) return (0) ; /* check inputs */n = U->n ; Up = U->p ; Ui = U->i ; Ux = U->x ;for (j = n-1 ; j >= 0 ; j--){x [j] /= Ux [Up [j+1]-1] ;for (p = Up [j] ; p < Up [j+1]-1 ; p++){x [Ui [p]] -= Ux [p] * x [j] ;}}return (1) ;}/* sparse Cholesky update/downdate, L*L' + sigma*w*w' (sigma = +1 or -1) */int cs_updown (cs *L, int sigma, const cs *C, const int *parent){int p, f, j, *Lp, *Li, *Cp, *Ci ;double *Lx, *Cx, alpha, beta = 1, delta, gamma, w1, w2, *w, n, beta2 = 1 ;if (!CS_CSC (L) || !CS_CSC (C) || !parent) return (0) ; /* check inputs */Lp = L->p ; Li = L->i ; Lx = L->x ; n = L->n ;Cp = C->p ; Ci = C->i ; Cx = C->x ;if ((p = Cp [0]) >= Cp [1]) return (1) ; /* return if C empty */w = cs_malloc (n, sizeof (double)) ; /* get workspace */if (!w) return (0) ; /* out of memory */f = Ci [p] ;for ( ; p < Cp [1] ; p++) f = CS_MIN (f, Ci [p]) ; /* f = min (find (C)) */for (j = f ; j != -1 ; j = parent [j]) w [j] = 0 ; /* clear workspace w */for (p = Cp [0] ; p < Cp [1] ; p++) w [Ci [p]] = Cx [p] ; /* w = C */for (j = f ; j != -1 ; j = parent [j]) /* walk path f up to root */{p = Lp [j] ;alpha = w [j] / Lx [p] ; /* alpha = w(j) / L(j,j) */beta2 = beta*beta + sigma*alpha*alpha ;if (beta2 <= 0) break ; /* not positive definite */beta2 = sqrt (beta2) ;delta = (sigma > 0) ? (beta / beta2) : (beta2 / beta) ;gamma = sigma * alpha / (beta2 * beta) ;Lx [p] = delta * Lx [p] + ((sigma > 0) ? (gamma * w [j]) : 0) ;beta = beta2 ;for (p++ ; p < Lp [j+1] ; p++){w1 = w [Li [p]] ;w [Li [p]] = w2 = w1 - alpha * Lx [p] ;Lx [p] = delta * Lx [p] + gamma * ((sigma > 0) ? w1 : w2) ;}}cs_free (w) ;return (beta2 > 0) ;}/* C = A' */cs *cs_transpose (const cs *A, int values){int p, q, j, *Cp, *Ci, n, m, *Ap, *Ai, *w ;double *Cx, *Ax ;cs *C ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */m = A->m ; n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;C = cs_spalloc (n, m, Ap [n], values && Ax, 0) ; /* allocate result */w = cs_calloc (m, sizeof (int)) ; /* get workspace */if (!C || !w) return (cs_done (C, w, NULL, 0)) ; /* out of memory */Cp = C->p ; Ci = C->i ; Cx = C->x ;for (p = 0 ; p < Ap [n] ; p++) w [Ai [p]]++ ; /* row counts */cs_cumsum (Cp, w, m) ; /* row pointers */for (j = 0 ; j < n ; j++){for (p = Ap [j] ; p < Ap [j+1] ; p++){Ci [q = w [Ai [p]]++] = j ; /* place A(i,j) as entry C(j,i) */if (Cx) Cx [q] = Ax [p] ;}}return (cs_done (C, w, NULL, 1)) ; /* success; free w and return C */}/* depth-first search and postorder of a tree rooted at node j */int cs_tdfs (int j, int k, int *head, const int *next, int *post, int *stack){int i, p, top = 0 ;if (!head || !next || !post || !stack) return (-1) ; /* check inputs */stack [0] = j ; /* place j on the stack */while (top >= 0) /* while (stack is not empty) */{p = stack [top] ; /* p = top of stack */i = head [p] ; /* i = youngest child of p */if (i == -1){top-- ; /* p has no unordered children left */post [k++] = p ; /* node p is the kth postordered node */}else{head [p] = next [i] ; /* remove i from children of p */stack [++top] = i ; /* start dfs on child node i */}}return (k) ;}/* C = A(p,p) where A and C are symmetric the upper part stored; pinv not p */cs *cs_symperm (const cs *A, const int *pinv, int values){int i, j, p, q, i2, j2, n, *Ap, *Ai, *Cp, *Ci, *w ;double *Cx, *Ax ;cs *C ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;C = cs_spalloc (n, n, Ap [n], values && (Ax != NULL), 0) ; /* alloc result*/w = cs_calloc (n, sizeof (int)) ; /* get workspace */if (!C || !w) return (cs_done (C, w, NULL, 0)) ; /* out of memory */Cp = C->p ; Ci = C->i ; Cx = C->x ;for (j = 0 ; j < n ; j++) /* count entries in each column of C */{j2 = pinv ? pinv [j] : j ; /* column j of A is column j2 of C */for (p = Ap [j] ; p < Ap [j+1] ; p++){i = Ai [p] ;if (i > j) continue ; /* skip lower triangular part of A */i2 = pinv ? pinv [i] : i ; /* row i of A is row i2 of C */w [CS_MAX (i2, j2)]++ ; /* column count of C */}}cs_cumsum (Cp, w, n) ; /* compute column pointers of C */for (j = 0 ; j < n ; j++){j2 = pinv ? pinv [j] : j ; /* column j of A is column j2 of C */for (p = Ap [j] ; p < Ap [j+1] ; p++){i = Ai [p] ;if (i > j) continue ; /* skip lower triangular part of A*/i2 = pinv ? pinv [i] : i ; /* row i of A is row i2 of C */Ci [q = w [CS_MAX (i2, j2)]++] = CS_MIN (i2, j2) ;if (Cx) Cx [q] = Ax [p] ;}}return (cs_done (C, w, NULL, 1)) ; /* success; free workspace, return C */}/* compute nnz(V) = S->lnz, S->pinv, S->leftmost, S->m2 from A and S->parent */static int cs_vcount (const cs *A, css *S){int i, k, p, pa, n = A->n, m = A->m, *Ap = A->p, *Ai = A->i, *next, *head,*tail, *nque, *pinv, *leftmost, *w, *parent = S->parent ;S->pinv = pinv = cs_malloc (m+n, sizeof (int)) ; /* allocate pinv, */S->leftmost = leftmost = cs_malloc (m, sizeof (int)) ; /* and leftmost */w = cs_malloc (m+3*n, sizeof (int)) ; /* get workspace */if (!pinv || !w || !leftmost){cs_free (w) ; /* pinv and leftmost freed later */return (0) ; /* out of memory */}next = w ; head = w + m ; tail = w + m + n ; nque = w + m + 2*n ;for (k = 0 ; k < n ; k++) head [k] = -1 ; /* queue k is empty */for (k = 0 ; k < n ; k++) tail [k] = -1 ;for (k = 0 ; k < n ; k++) nque [k] = 0 ;for (i = 0 ; i < m ; i++) leftmost [i] = -1 ;for (k = n-1 ; k >= 0 ; k--){for (p = Ap [k] ; p < Ap [k+1] ; p++){leftmost [Ai [p]] = k ; /* leftmost[i] = min(find(A(i,:)))*/}}for (i = m-1 ; i >= 0 ; i--) /* scan rows in reverse order */{pinv [i] = -1 ; /* row i is not yet ordered */k = leftmost [i] ;if (k == -1) continue ; /* row i is empty */if (nque [k]++ == 0) tail [k] = i ; /* first row in queue k */next [i] = head [k] ; /* put i at head of queue k */head [k] = i ;}S->lnz = 0 ;S->m2 = m ;for (k = 0 ; k < n ; k++) /* find row permutation and nnz(V)*/{i = head [k] ; /* remove row i from queue k */S->lnz++ ; /* count V(k,k) as nonzero */if (i < 0) i = S->m2++ ; /* add a fictitious row */pinv [i] = k ; /* associate row i with V(:,k) */if (--nque [k] <= 0) continue ; /* skip if V(k+1:m,k) is empty */S->lnz += nque [k] ; /* nque [k] is nnz (V(k+1:m,k)) */if ((pa = parent [k]) != -1) /* move all rows to parent of k */{if (nque [pa] == 0) tail [pa] = tail [k] ;next [tail [k]] = head [pa] ;head [pa] = next [i] ;nque [pa] += nque [k] ;}}for (i = 0 ; i < m ; i++) if (pinv [i] < 0) pinv [i] = k++ ;cs_free (w) ;return (1) ;}/* symbolic ordering and analysis for QR or LU */css *cs_sqr (int order, const cs *A, int qr){int n, k, ok = 1, *post ;css *S ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */n = A->n ;S = cs_calloc (1, sizeof (css)) ; /* allocate result S */if (!S) return (NULL) ; /* out of memory */S->q = cs_amd (order, A) ; /* fill-reducing ordering */if (order && !S->q) return (cs_sfree (S)) ;if (qr) /* QR symbolic analysis */{cs *C = order ? cs_permute (A, NULL, S->q, 0) : ((cs *) A) ;S->parent = cs_etree (C, 1) ; /* etree of C'*C, where C=A(:,q) */post = cs_post (S->parent, n) ;S->cp = cs_counts (C, S->parent, post, 1) ; /* col counts chol(C'*C) */cs_free (post) ;ok = C && S->parent && S->cp && cs_vcount (C, S) ;if (ok) for (S->unz = 0, k = 0 ; k < n ; k++) S->unz += S->cp [k] ;ok = ok && S->lnz >= 0 && S->unz >= 0 ; /* int overflow guard */if (order) cs_spfree (C) ;}else{S->unz = 4*(A->p [n]) + n ; /* for LU factorization only, */S->lnz = S->unz ; /* guess nnz(L) and nnz(U) */}return (ok ? S : cs_sfree (S)) ; /* return result S */}/* solve Gx=b(:,k), where G is either upper (lo=0) or lower (lo=1) triangular */int cs_spsolve (cs *G, const cs *B, int k, int *xi, double *x, const int *pinv,int lo){int j, J, p, q, px, top, n, *Gp, *Gi, *Bp, *Bi ;double *Gx, *Bx ;if (!CS_CSC (G) || !CS_CSC (B) || !xi || !x) return (-1) ;Gp = G->p ; Gi = G->i ; Gx = G->x ; n = G->n ;Bp = B->p ; Bi = B->i ; Bx = B->x ;top = cs_reach (G, B, k, xi, pinv) ; /* xi[top..n-1]=Reach(B(:,k)) */for (p = top ; p < n ; p++) x [xi [p]] = 0 ; /* clear x */for (p = Bp [k] ; p < Bp [k+1] ; p++) x [Bi [p]] = Bx [p] ; /* scatter B */for (px = top ; px < n ; px++){j = xi [px] ; /* x(j) is nonzero */J = pinv ? (pinv [j]) : j ; /* j maps to col J of G */if (J < 0) continue ; /* column J is empty */x [j] /= Gx [lo ? (Gp [J]) : (Gp [J+1]-1)] ;/* x(j) /= G(j,j) */p = lo ? (Gp [J]+1) : (Gp [J]) ; /* lo: L(j,j) 1st entry */q = lo ? (Gp [J+1]) : (Gp [J+1]-1) ; /* up: U(j,j) last entry */for ( ; p < q ; p++){x [Gi [p]] -= Gx [p] * x [j] ; /* x(i) -= G(i,j) * x(j) */}}return (top) ; /* return top of stack */}/* ordering and symbolic analysis for a Cholesky factorization */css *cs_schol (int order, const cs *A){int n, *c, *post, *P ;cs *C ;css *S ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */n = A->n ;S = cs_calloc (1, sizeof (css)) ; /* allocate result S */if (!S) return (NULL) ; /* out of memory */P = cs_amd (order, A) ; /* P = amd(A+A'), or natural */S->pinv = cs_pinv (P, n) ; /* find inverse permutation */cs_free (P) ;if (order && !S->pinv) return (cs_sfree (S)) ;C = cs_symperm (A, S->pinv, 0) ; /* C = spones(triu(A(P,P))) */S->parent = cs_etree (C, 0) ; /* find etree of C */post = cs_post (S->parent, n) ; /* postorder the etree */c = cs_counts (C, S->parent, post, 0) ; /* find column counts of chol(C) */cs_free (post) ;cs_spfree (C) ;S->cp = cs_malloc (n+1, sizeof (int)) ; /* allocate result S->cp */S->unz = S->lnz = cs_cumsum (S->cp, c, n) ; /* find column pointers for L */cs_free (c) ;return ((S->lnz >= 0) ? S : cs_sfree (S)) ;}/* find the strongly connected components of a square matrix */csd *cs_scc (cs *A) /* matrix A temporarily modified, then restored */{int n, i, k, b, nb = 0, top, *xi, *pstack, *p, *r, *Ap, *ATp, *rcopy, *Blk ;cs *AT ;csd *D ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */n = A->n ; Ap = A->p ;D = cs_dalloc (n, 0) ; /* allocate result */AT = cs_transpose (A, 0) ; /* AT = A' */xi = cs_malloc (2*n+1, sizeof (int)) ; /* get workspace */if (!D || !AT || !xi) return (cs_ddone (D, AT, xi, 0)) ;Blk = xi ; rcopy = pstack = xi + n ;p = D->p ; r = D->r ; ATp = AT->p ;top = n ;for (i = 0 ; i < n ; i++) /* first dfs(A) to find finish times (xi) */{if (!CS_MARKED (Ap, i)) top = cs_dfs (i, A, top, xi, pstack, NULL) ;}for (i = 0 ; i < n ; i++) CS_MARK (Ap, i) ; /* restore A; unmark all nodes*/top = n ;nb = n ;for (k = 0 ; k < n ; k++) /* dfs(A') to find strongly connnected comp */{i = xi [k] ; /* get i in reverse order of finish times */if (CS_MARKED (ATp, i)) continue ; /* skip node i if already ordered */r [nb--] = top ; /* node i is the start of a component in p */top = cs_dfs (i, AT, top, p, pstack, NULL) ;}r [nb] = 0 ; /* first block starts at zero; shift r up */for (k = nb ; k <= n ; k++) r [k-nb] = r [k] ;D->nb = nb = n-nb ; /* nb = # of strongly connected components */for (b = 0 ; b < nb ; b++) /* sort each block in natural order */{for (k = r [b] ; k < r [b+1] ; k++) Blk [p [k]] = b ;}for (b = 0 ; b <= nb ; b++) rcopy [b] = r [b] ;for (i = 0 ; i < n ; i++) p [rcopy [Blk [i]]++] = i ;return (cs_ddone (D, AT, xi, 1)) ;}/* x = x + beta * A(:,j), where x is a dense vector and A(:,j) is sparse */int cs_scatter (const cs *A, int j, double beta, int *w, double *x, int mark,cs *C, int nz){int i, p, *Ap, *Ai, *Ci ;double *Ax ;if (!CS_CSC (A) || !w || !CS_CSC (C)) return (-1) ; /* check inputs */Ap = A->p ; Ai = A->i ; Ax = A->x ; Ci = C->i ;for (p = Ap [j] ; p < Ap [j+1] ; p++){i = Ai [p] ; /* A(i,j) is nonzero */if (w [i] < mark){w [i] = mark ; /* i is new entry in column j */Ci [nz++] = i ; /* add i to pattern of C(:,j) */if (x) x [i] = beta * Ax [p] ; /* x(i) = beta*A(i,j) */}else if (x) x [i] += beta * Ax [p] ; /* i exists in C(:,j) already */}return (nz) ;}/* xi [top...n-1] = nodes reachable from graph of G*P' via nodes in B(:,k).* xi [n...2n-1] used as workspace */int cs_reach (cs *G, const cs *B, int k, int *xi, const int *pinv){int p, n, top, *Bp, *Bi, *Gp ;if (!CS_CSC (G) || !CS_CSC (B) || !xi) return (-1) ; /* check inputs */n = G->n ; Bp = B->p ; Bi = B->i ; Gp = G->p ;top = n ;for (p = Bp [k] ; p < Bp [k+1] ; p++){if (!CS_MARKED (Gp, Bi [p])) /* start a dfs at unmarked node i */{top = cs_dfs (Bi [p], G, top, xi, xi+n, pinv) ;}}for (p = top ; p < n ; p++) CS_MARK (Gp, xi [p]) ; /* restore G */return (top) ;}/* return a random permutation vector, the identity perm, or p = n-1:-1:0.* seed = -1 means p = n-1:-1:0. seed = 0 means p = identity. otherwise* p = random permutation. */int *cs_randperm (int n, int seed){int *p, k, j, t ;if (seed == 0) return (NULL) ; /* return p = NULL (identity) */p = cs_malloc (n, sizeof (int)) ; /* allocate result */if (!p) return (NULL) ; /* out of memory */for (k = 0 ; k < n ; k++) p [k] = n-k-1 ;if (seed == -1) return (p) ; /* return reverse permutation */srand (seed) ; /* get new random number seed */for (k = 0 ; k < n ; k++){j = k + (rand ( ) % (n-k)) ; /* j = rand int in range k to n-1 */t = p [j] ; /* swap p[k] and p[j] */p [j] = p [k] ;p [k] = t ;}return (p) ;}/* x=A\b where A can be rectangular; b overwritten with solution */int cs_qrsol (int order, const cs *A, double *b){double *x ;css *S ;csn *N ;cs *AT = NULL ;int k, m, n, ok ;if (!CS_CSC (A) || !b) return (0) ; /* check inputs */n = A->n ;m = A->m ;if (m >= n){S = cs_sqr (order, A, 1) ; /* ordering and symbolic analysis */N = cs_qr (A, S) ; /* numeric QR factorization */x = cs_calloc (S ? S->m2 : 1, sizeof (double)) ; /* get workspace */ok = (S && N && x) ;if (ok){cs_ipvec (S->pinv, b, x, m) ; /* x(0:m-1) = b(p(0:m-1) */for (k = 0 ; k < n ; k++) /* apply Householder refl. to x */{cs_happly (N->L, k, N->B [k], x) ;}cs_usolve (N->U, x) ; /* x = R\x */cs_ipvec (S->q, x, b, n) ; /* b(q(0:n-1)) = x(0:n-1) */}}else{AT = cs_transpose (A, 1) ; /* Ax=b is underdetermined */S = cs_sqr (order, AT, 1) ; /* ordering and symbolic analysis */N = cs_qr (AT, S) ; /* numeric QR factorization of A' */x = cs_calloc (S ? S->m2 : 1, sizeof (double)) ; /* get workspace */ok = (AT && S && N && x) ;if (ok){cs_pvec (S->q, b, x, m) ; /* x(q(0:m-1)) = b(0:m-1) */cs_utsolve (N->U, x) ; /* x = R'\x */for (k = m-1 ; k >= 0 ; k--) /* apply Householder refl. to x */{cs_happly (N->L, k, N->B [k], x) ;}cs_pvec (S->pinv, x, b, n) ; /* b(0:n-1) = x(p(0:n-1)) */}}cs_free (x) ;cs_sfree (S) ;cs_nfree (N) ;cs_spfree (AT) ;return (ok) ;}/* sparse QR factorization [V,beta,pinv,R] = qr (A) */csn *cs_qr (const cs *A, const css *S){double *Rx, *Vx, *Ax, *Beta, *x ;int i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai,*parent, *Rp, *Ri, *Vp, *Vi, *w, *pinv, *q ;cs *R, *V ;csn *N ;if (!CS_CSC (A) || !S) return (NULL) ;m = A->m ; n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;q = S->q ; parent = S->parent ; pinv = S->pinv ; m2 = S->m2 ;vnz = S->lnz ; rnz = S->unz ; leftmost = S->leftmost ;w = cs_malloc (m2+n, sizeof (int)) ; /* get int workspace */x = cs_malloc (m2, sizeof (double)) ; /* get double workspace */N = cs_calloc (1, sizeof (csn)) ; /* allocate result */if (!w || !x || !N) return (cs_ndone (N, NULL, w, x, 0)) ;s = w + m2 ; /* s is size n */for (k = 0 ; k < m2 ; k++) x [k] = 0 ; /* clear workspace x */N->L = V = cs_spalloc (m2, n, vnz, 1, 0) ; /* allocate result V */N->U = R = cs_spalloc (m2, n, rnz, 1, 0) ; /* allocate result R */N->B = Beta = cs_malloc (n, sizeof (double)) ; /* allocate result Beta */if (!R || !V || !Beta) return (cs_ndone (N, NULL, w, x, 0)) ;Rp = R->p ; Ri = R->i ; Rx = R->x ;Vp = V->p ; Vi = V->i ; Vx = V->x ;for (i = 0 ; i < m2 ; i++) w [i] = -1 ; /* clear w, to mark nodes */rnz = 0 ; vnz = 0 ;for (k = 0 ; k < n ; k++) /* compute V and R */{Rp [k] = rnz ; /* R(:,k) starts here */Vp [k] = p1 = vnz ; /* V(:,k) starts here */w [k] = k ; /* add V(k,k) to pattern of V */Vi [vnz++] = k ;top = n ;col = q ? q [k] : k ;for (p = Ap [col] ; p < Ap [col+1] ; p++) /* find R(:,k) pattern */{i = leftmost [Ai [p]] ; /* i = min(find(A(i,q))) */for (len = 0 ; w [i] != k ; i = parent [i]) /* traverse up to k */{s [len++] = i ;w [i] = k ;}while (len > 0) s [--top] = s [--len] ; /* push path on stack */i = pinv [Ai [p]] ; /* i = permuted row of A(:,col) */x [i] = Ax [p] ; /* x (i) = A(:,col) */if (i > k && w [i] < k) /* pattern of V(:,k) = x (k+1:m) */{Vi [vnz++] = i ; /* add i to pattern of V(:,k) */w [i] = k ;}}for (p = top ; p < n ; p++) /* for each i in pattern of R(:,k) */{i = s [p] ; /* R(i,k) is nonzero */cs_happly (V, i, Beta [i], x) ; /* apply (V(i),Beta(i)) to x */Ri [rnz] = i ; /* R(i,k) = x(i) */Rx [rnz++] = x [i] ;x [i] = 0 ;if (parent [i] == k) vnz = cs_scatter (V, i, 0, w, NULL, k, V, vnz);}for (p = p1 ; p < vnz ; p++) /* gather V(:,k) = x */{Vx [p] = x [Vi [p]] ;x [Vi [p]] = 0 ;}Ri [rnz] = k ; /* R(k,k) = norm (x) */Rx [rnz++] = cs_house (Vx+p1, Beta+k, vnz-p1) ; /* [v,beta]=house(x) */}Rp [n] = rnz ; /* finalize R */Vp [n] = vnz ; /* finalize V */return (cs_ndone (N, NULL, w, x, 1)) ; /* success */}/* x = b(p), for dense vectors x and b; p=NULL denotes identity */int cs_pvec (const int *p, const double *b, double *x, int n){int k ;if (!x || !b) return (0) ; /* check inputs */for (k = 0 ; k < n ; k++) x [k] = b [p ? p [k] : k] ;return (1) ;}/* print a sparse matrix */int cs_print (const cs *A, int brief){int p, j, m, n, nzmax, nz, *Ap, *Ai ;double *Ax ;if (!A) { printf ("(null)\n") ; return (0) ; }m = A->m ; n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;nzmax = A->nzmax ; nz = A->nz ;printf ("CSparse Version %d.%d.%d, %s. %s\n", CS_VER, CS_SUBVER,CS_SUBSUB, CS_DATE, CS_COPYRIGHT) ;if (nz < 0){printf ("%d-by-%d, nzmax: %d nnz: %d, 1-norm: %g\n", m, n, nzmax,Ap [n], cs_norm (A)) ;for (j = 0 ; j < n ; j++){printf (" col %d : locations %d to %d\n", j, Ap [j], Ap [j+1]-1);for (p = Ap [j] ; p < Ap [j+1] ; p++){printf (" %d : %g\n", Ai [p], Ax ? Ax [p] : 1) ;if (brief && p > 20) { printf (" ...\n") ; return (1) ; }}}}else{printf ("triplet: %d-by-%d, nzmax: %d nnz: %d\n", m, n, nzmax, nz) ;for (p = 0 ; p < nz ; p++){printf (" %d %d : %g\n", Ai [p], Ap [p], Ax ? Ax [p] : 1) ;if (brief && p > 20) { printf (" ...\n") ; return (1) ; }}}return (1) ;}/* post order a forest */int *cs_post (const int *parent, int n){int j, k = 0, *post, *w, *head, *next, *stack ;if (!parent) return (NULL) ; /* check inputs */post = cs_malloc (n, sizeof (int)) ; /* allocate result */w = cs_malloc (3*n, sizeof (int)) ; /* get workspace */if (!w || !post) return (cs_idone (post, NULL, w, 0)) ;head = w ; next = w + n ; stack = w + 2*n ;for (j = 0 ; j < n ; j++) head [j] = -1 ; /* empty linked lists */for (j = n-1 ; j >= 0 ; j--) /* traverse nodes in reverse order*/{if (parent [j] == -1) continue ; /* j is a root */next [j] = head [parent [j]] ; /* add j to list of its parent */head [parent [j]] = j ;}for (j = 0 ; j < n ; j++){if (parent [j] != -1) continue ; /* skip j if it is not a root */k = cs_tdfs (j, k, head, next, post, stack) ;}return (cs_idone (post, NULL, w, 1)) ; /* success; free w, return post */}/* pinv = p', or p = pinv' */int *cs_pinv (int const *p, int n){int k, *pinv ;if (!p) return (NULL) ; /* p = NULL denotes identity */pinv = cs_malloc (n, sizeof (int)) ; /* allocate result */if (!pinv) return (NULL) ; /* out of memory */for (k = 0 ; k < n ; k++) pinv [p [k]] = k ;/* invert the permutation */return (pinv) ; /* return result */}/* C = A(p,q) where p and q are permutations of 0..m-1 and 0..n-1. */cs *cs_permute (const cs *A, const int *pinv, const int *q, int values){int t, j, k, nz = 0, m, n, *Ap, *Ai, *Cp, *Ci ;double *Cx, *Ax ;cs *C ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */m = A->m ; n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;C = cs_spalloc (m, n, Ap [n], values && Ax != NULL, 0) ; /* alloc result */if (!C) return (cs_done (C, NULL, NULL, 0)) ; /* out of memory */Cp = C->p ; Ci = C->i ; Cx = C->x ;for (k = 0 ; k < n ; k++){Cp [k] = nz ; /* column k of C is column q[k] of A */j = q ? (q [k]) : k ;for (t = Ap [j] ; t < Ap [j+1] ; t++){if (Cx) Cx [nz] = Ax [t] ; /* row i of A is row pinv[i] of C */Ci [nz++] = pinv ? (pinv [Ai [t]]) : Ai [t] ;}}Cp [n] = nz ; /* finalize the last column of C */return (cs_done (C, NULL, NULL, 1)) ;}/* 1-norm of a sparse matrix = max (sum (abs (A))), largest column sum */double cs_norm (const cs *A){int p, j, n, *Ap ;double *Ax, norm = 0, s ;if (!CS_CSC (A) || !A->x) return (-1) ; /* check inputs */n = A->n ; Ap = A->p ; Ax = A->x ;for (j = 0 ; j < n ; j++){for (s = 0, p = Ap [j] ; p < Ap [j+1] ; p++) s += fabs (Ax [p]) ;norm = CS_MAX (norm, s) ;}return (norm) ;}/* C = A*B */cs *cs_multiply (const cs *A, const cs *B){int p, j, nz = 0, anz, *Cp, *Ci, *Bp, m, n, bnz, *w, values, *Bi ;double *x, *Bx, *Cx ;cs *C ;if (!CS_CSC (A) || !CS_CSC (B)) return (NULL) ; /* check inputs */m = A->m ; anz = A->p [A->n] ;n = B->n ; Bp = B->p ; Bi = B->i ; Bx = B->x ; bnz = Bp [n] ;w = cs_calloc (m, sizeof (int)) ; /* get workspace */values = (A->x != NULL) && (Bx != NULL) ;x = values ? cs_malloc (m, sizeof (double)) : NULL ; /* get workspace */C = cs_spalloc (m, n, anz + bnz, values, 0) ; /* allocate result */if (!C || !w || (values && !x)) return (cs_done (C, w, x, 0)) ;Cp = C->p ;for (j = 0 ; j < n ; j++){if (nz + m > C->nzmax && !cs_sprealloc (C, 2*(C->nzmax)+m)){return (cs_done (C, w, x, 0)) ; /* out of memory */}Ci = C->i ; Cx = C->x ; /* C->i and C->x may be reallocated */Cp [j] = nz ; /* column j of C starts here */for (p = Bp [j] ; p < Bp [j+1] ; p++){nz = cs_scatter (A, Bi [p], Bx ? Bx [p] : 1, w, x, j+1, C, nz) ;}if (values) for (p = Cp [j] ; p < nz ; p++) Cx [p] = x [Ci [p]] ;}Cp [n] = nz ; /* finalize the last column of C */cs_sprealloc (C, 0) ; /* remove extra space from C */return (cs_done (C, w, x, 1)) ; /* success; free workspace, return C */}/* find an augmenting path starting at column k and extend the match if found */static void cs_augment (int k, const cs *A, int *jmatch, int *cheap, int *w,int *js, int *is, int *ps){int found = 0, p, i = -1, *Ap = A->p, *Ai = A->i, head = 0, j ;js [0] = k ; /* start with just node k in jstack */while (head >= 0){/* --- Start (or continue) depth-first-search at node j ------------- */j = js [head] ; /* get j from top of jstack */if (w [j] != k) /* 1st time j visited for kth path */{w [j] = k ; /* mark j as visited for kth path */for (p = cheap [j] ; p < Ap [j+1] && !found ; p++){i = Ai [p] ; /* try a cheap assignment (i,j) */found = (jmatch [i] == -1) ;}cheap [j] = p ; /* start here next time j is traversed*/if (found){is [head] = i ; /* column j matched with row i */break ; /* end of augmenting path */}ps [head] = Ap [j] ; /* no cheap match: start dfs for j */}/* --- Depth-first-search of neighbors of j ------------------------- */for (p = ps [head] ; p < Ap [j+1] ; p++){i = Ai [p] ; /* consider row i */if (w [jmatch [i]] == k) continue ; /* skip jmatch [i] if marked */ps [head] = p + 1 ; /* pause dfs of node j */is [head] = i ; /* i will be matched with j if found */js [++head] = jmatch [i] ; /* start dfs at column jmatch [i] */break ;}if (p == Ap [j+1]) head-- ; /* node j is done; pop from stack */} /* augment the match if path found: */if (found) for (p = head ; p >= 0 ; p--) jmatch [is [p]] = js [p] ;}/* find a maximum transveral */int *cs_maxtrans (const cs *A, int seed) /*[jmatch [0..m-1]; imatch [0..n-1]]*/{int i, j, k, n, m, p, n2 = 0, m2 = 0, *Ap, *jimatch, *w, *cheap, *js, *is,*ps, *Ai, *Cp, *jmatch, *imatch, *q ;cs *C ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */n = A->n ; m = A->m ; Ap = A->p ; Ai = A->i ;w = jimatch = cs_calloc (m+n, sizeof (int)) ; /* allocate result */if (!jimatch) return (NULL) ;for (k = 0, j = 0 ; j < n ; j++) /* count nonempty rows and columns */{n2 += (Ap [j] < Ap [j+1]) ;for (p = Ap [j] ; p < Ap [j+1] ; p++){w [Ai [p]] = 1 ;k += (j == Ai [p]) ; /* count entries already on diagonal */}}if (k == CS_MIN (m,n)) /* quick return if diagonal zero-free */{jmatch = jimatch ; imatch = jimatch + m ;for (i = 0 ; i < k ; i++) jmatch [i] = i ;for ( ; i < m ; i++) jmatch [i] = -1 ;for (j = 0 ; j < k ; j++) imatch [j] = j ;for ( ; j < n ; j++) imatch [j] = -1 ;return (cs_idone (jimatch, NULL, NULL, 1)) ;}for (i = 0 ; i < m ; i++) m2 += w [i] ;C = (m2 < n2) ? cs_transpose (A,0) : ((cs *) A) ; /* transpose if needed */if (!C) return (cs_idone (jimatch, (m2 < n2) ? C : NULL, NULL, 0)) ;n = C->n ; m = C->m ; Cp = C->p ;jmatch = (m2 < n2) ? jimatch + n : jimatch ;imatch = (m2 < n2) ? jimatch : jimatch + m ;w = cs_malloc (5*n, sizeof (int)) ; /* get workspace */if (!w) return (cs_idone (jimatch, (m2 < n2) ? C : NULL, w, 0)) ;cheap = w + n ; js = w + 2*n ; is = w + 3*n ; ps = w + 4*n ;for (j = 0 ; j < n ; j++) cheap [j] = Cp [j] ; /* for cheap assignment */for (j = 0 ; j < n ; j++) w [j] = -1 ; /* all columns unflagged */for (i = 0 ; i < m ; i++) jmatch [i] = -1 ; /* nothing matched yet */q = cs_randperm (n, seed) ; /* q = random permutation */for (k = 0 ; k < n ; k++) /* augment, starting at column q[k] */{cs_augment (q ? q [k]: k, C, jmatch, cheap, w, js, is, ps) ;}cs_free (q) ;for (j = 0 ; j < n ; j++) imatch [j] = -1 ; /* find row match */for (i = 0 ; i < m ; i++) if (jmatch [i] >= 0) imatch [jmatch [i]] = i ;return (cs_idone (jimatch, (m2 < n2) ? C : NULL, w, 1)) ;}#ifdef MATLAB_MEX_FILE#define malloc mxMalloc#define free mxFree#define realloc mxRealloc#define calloc mxCalloc#endif/* wrapper for malloc */void *cs_malloc (int n, size_t size){return (malloc (CS_MAX (n,1) * size)) ;}/* wrapper for calloc */void *cs_calloc (int n, size_t size){return (calloc (CS_MAX (n,1), size)) ;}/* wrapper for free */void *cs_free (void *p){if (p) free (p) ; /* free p if it is not already NULL */return (NULL) ; /* return NULL to simplify the use of cs_free */}/* wrapper for realloc */void *cs_realloc (void *p, int n, size_t size, int *ok){void *pnew ;pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */*ok = (pnew != NULL) ; /* realloc fails if pnew is NULL */return ((*ok) ? pnew : p) ; /* return original p if failure */}/* x=A\b where A is unsymmetric; b overwritten with solution */int cs_lusol (int order, const cs *A, double *b, double tol){double *x ;css *S ;csn *N ;int n, ok ;if (!CS_CSC (A) || !b) return (0) ; /* check inputs */n = A->n ;S = cs_sqr (order, A, 0) ; /* ordering and symbolic analysis */N = cs_lu (A, S, tol) ; /* numeric LU factorization */x = cs_malloc (n, sizeof (double)) ; /* get workspace */ok = (S && N && x) ;if (ok){cs_ipvec (N->pinv, b, x, n) ; /* x = b(p) */cs_lsolve (N->L, x) ; /* x = L\x */cs_usolve (N->U, x) ; /* x = U\x */cs_ipvec (S->q, x, b, n) ; /* b(q) = x */}cs_free (x) ;cs_sfree (S) ;cs_nfree (N) ;return (ok) ;}/* [L,U,pinv]=lu(A, [q lnz unz]). lnz and unz can be guess */csn *cs_lu (const cs *A, const css *S, double tol){cs *L, *U ;csn *N ;double pivot, *Lx, *Ux, *x, a, t ;int *Lp, *Li, *Up, *Ui, *pinv, *xi, *q, n, ipiv, k, top, p, i, col, lnz,unz;if (!CS_CSC (A) || !S) return (NULL) ; /* check inputs */n = A->n ;q = S->q ; lnz = S->lnz ; unz = S->unz ;x = cs_malloc (n, sizeof (double)) ; /* get double workspace */xi = cs_malloc (2*n, sizeof (int)) ; /* get int workspace */N = cs_calloc (1, sizeof (csn)) ; /* allocate result */if (!x || !xi || !N) return (cs_ndone (N, NULL, xi, x, 0)) ;N->L = L = cs_spalloc (n, n, lnz, 1, 0) ; /* allocate result L */N->U = U = cs_spalloc (n, n, unz, 1, 0) ; /* allocate result U */N->pinv = pinv = cs_malloc (n, sizeof (int)) ; /* allocate result pinv */if (!L || !U || !pinv) return (cs_ndone (N, NULL, xi, x, 0)) ;Lp = L->p ; Up = U->p ;for (i = 0 ; i < n ; i++) x [i] = 0 ; /* clear workspace */for (i = 0 ; i < n ; i++) pinv [i] = -1 ; /* no rows pivotal yet */for (k = 0 ; k <= n ; k++) Lp [k] = 0 ; /* no cols of L yet */lnz = unz = 0 ;for (k = 0 ; k < n ; k++) /* compute L(:,k) and U(:,k) */{/* --- Triangular solve --------------------------------------------- */Lp [k] = lnz ; /* L(:,k) starts here */Up [k] = unz ; /* U(:,k) starts here */if ((lnz + n > L->nzmax && !cs_sprealloc (L, 2*L->nzmax + n)) ||(unz + n > U->nzmax && !cs_sprealloc (U, 2*U->nzmax + n))){return (cs_ndone (N, NULL, xi, x, 0)) ;}Li = L->i ; Lx = L->x ; Ui = U->i ; Ux = U->x ;col = q ? (q [k]) : k ;top = cs_spsolve (L, A, col, xi, x, pinv, 1) ; /* x = L\A(:,col) *//* --- Find pivot --------------------------------------------------- */ipiv = -1 ;a = -1 ;for (p = top ; p < n ; p++){i = xi [p] ; /* x(i) is nonzero */if (pinv [i] < 0) /* row i is not yet pivotal */{if ((t = fabs (x [i])) > a){a = t ; /* largest pivot candidate so far */ipiv = i ;}}else /* x(i) is the entry U(pinv[i],k) */{Ui [unz] = pinv [i] ;Ux [unz++] = x [i] ;}}if (ipiv == -1 || a <= 0) return (cs_ndone (N, NULL, xi, x, 0)) ;if (pinv [col] < 0 && fabs (x [col]) >= a*tol) ipiv = col ;/* --- Divide by pivot ---------------------------------------------- */pivot = x [ipiv] ; /* the chosen pivot */Ui [unz] = k ; /* last entry in U(:,k) is U(k,k) */Ux [unz++] = pivot ;pinv [ipiv] = k ; /* ipiv is the kth pivot row */Li [lnz] = ipiv ; /* first entry in L(:,k) is L(k,k) = 1 */Lx [lnz++] = 1 ;for (p = top ; p < n ; p++) /* L(k+1:n,k) = x / pivot */{i = xi [p] ;if (pinv [i] < 0) /* x(i) is an entry in L(:,k) */{Li [lnz] = i ; /* save unpermuted row in L */Lx [lnz++] = x [i] / pivot ; /* scale pivot column */}x [i] = 0 ; /* x [0..n-1] = 0 for next k */}}/* --- Finalize L and U ------------------------------------------------- */Lp [n] = lnz ;Up [n] = unz ;Li = L->i ; /* fix row indices of L for final pinv */for (p = 0 ; p < lnz ; p++) Li [p] = pinv [Li [p]] ;cs_sprealloc (L, 0) ; /* remove extra space from L and U */cs_sprealloc (U, 0) ;return (cs_ndone (N, NULL, xi, x, 1)) ; /* success */}/* solve L'x=b where x and b are dense. x=b on input, solution on output. */int cs_ltsolve (const cs *L, double *x){int p, j, n, *Lp, *Li ;double *Lx ;if (!CS_CSC (L) || !x) return (0) ; /* check inputs */n = L->n ; Lp = L->p ; Li = L->i ; Lx = L->x ;for (j = n-1 ; j >= 0 ; j--){for (p = Lp [j]+1 ; p < Lp [j+1] ; p++){x [j] -= Lx [p] * x [Li [p]] ;}x [j] /= Lx [Lp [j]] ;}return (1) ;}/* solve Lx=b where x and b are dense. x=b on input, solution on output. */int cs_lsolve (const cs *L, double *x){int p, j, n, *Lp, *Li ;double *Lx ;if (!CS_CSC (L) || !x) return (0) ; /* check inputs */n = L->n ; Lp = L->p ; Li = L->i ; Lx = L->x ;for (j = 0 ; j < n ; j++){x [j] /= Lx [Lp [j]] ;for (p = Lp [j]+1 ; p < Lp [j+1] ; p++){x [Li [p]] -= Lx [p] * x [j] ;}}return (1) ;}/* load a triplet matrix from a file */cs *cs_load (FILE *f){int i, j ;double x ;cs *T ;if (!f) return (NULL) ; /* check inputs */T = cs_spalloc (0, 0, 1, 1, 1) ; /* allocate result */while (fscanf (f, "%d %d %lg\n", &i, &j, &x) == 3){if (!cs_entry (T, i, j, x)) return (cs_spfree (T)) ;}return (T) ;}/* consider A(i,j), node j in ith row subtree and return lca(jprev,j) */int cs_leaf (int i, int j, const int *first, int *maxfirst, int *prevleaf,int *ancestor, int *jleaf){int q, s, sparent, jprev ;if (!first || !maxfirst || !prevleaf || !ancestor || !jleaf) return (-1) ;*jleaf = 0 ;if (i <= j || first [j] <= maxfirst [i]) return (-1) ; /* j not a leaf */maxfirst [i] = first [j] ; /* update max first[j] seen so far */jprev = prevleaf [i] ; /* jprev = previous leaf of ith subtree */prevleaf [i] = j ;*jleaf = (jprev == -1) ? 1: 2 ; /* j is first or subsequent leaf */if (*jleaf == 1) return (i) ; /* if 1st leaf, q = root of ith subtree */for (q = jprev ; q != ancestor [q] ; q = ancestor [q]) ;for (s = jprev ; s != q ; s = sparent){sparent = ancestor [s] ; /* path compression */ancestor [s] = q ;}return (q) ; /* q = least common ancester (jprev,j) */}/* x(p) = b, for dense vectors x and b; p=NULL denotes identity */int cs_ipvec (const int *p, const double *b, double *x, int n){int k ;if (!x || !b) return (0) ; /* check inputs */for (k = 0 ; k < n ; k++) x [p ? p [k] : k] = b [k] ;return (1) ;}/* create a Householder reflection [v,beta,s]=house(x), overwrite x with v,* where (I-beta*v*v')*x = s*x. See Algo 5.1.1, Golub & Van Loan, 3rd ed. */double cs_house (double *x, double *beta, int n){double s, sigma = 0 ;int i ;if (!x || !beta) return (-1) ; /* check inputs */for (i = 1 ; i < n ; i++) sigma += x [i] * x [i] ;if (sigma == 0){s = fabs (x [0]) ; /* s = |x(0)| */(*beta) = (x [0] <= 0) ? 2 : 0 ;x [0] = 1 ;}else{s = sqrt (x [0] * x [0] + sigma) ; /* s = norm (x) */x [0] = (x [0] <= 0) ? (x [0] - s) : (-sigma / (x [0] + s)) ;(*beta) = -1. / (s * x [0]) ;}return (s) ;}/* apply the ith Householder vector to x */int cs_happly (const cs *V, int i, double beta, double *x){int p, *Vp, *Vi ;double *Vx, tau = 0 ;if (!CS_CSC (V) || !x) return (0) ; /* check inputs */Vp = V->p ; Vi = V->i ; Vx = V->x ;for (p = Vp [i] ; p < Vp [i+1] ; p++) /* tau = v'*x */{tau += Vx [p] * x [Vi [p]] ;}tau *= beta ; /* tau = beta*(v'*x) */for (p = Vp [i] ; p < Vp [i+1] ; p++) /* x = x - v*tau */{x [Vi [p]] -= Vx [p] * tau ;}return (1) ;}/* y = A*x+y */int cs_gaxpy (const cs *A, const double *x, double *y){int p, j, n, *Ap, *Ai ;double *Ax ;if (!CS_CSC (A) || !x || !y) return (0) ; /* check inputs */n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;for (j = 0 ; j < n ; j++){for (p = Ap [j] ; p < Ap [j+1] ; p++){y [Ai [p]] += Ax [p] * x [j] ;}}return (1) ;}/* drop entries for which fkeep(A(i,j)) is false; return nz if OK, else -1 */int cs_fkeep (cs *A, int (*fkeep) (int, int, double, void *), void *other){int j, p, nz = 0, n, *Ap, *Ai ;double *Ax ;if (!CS_CSC (A) || !fkeep) return (-1) ; /* check inputs */n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;for (j = 0 ; j < n ; j++){p = Ap [j] ; /* get current location of col j */Ap [j] = nz ; /* record new location of col j */for ( ; p < Ap [j+1] ; p++){if (fkeep (Ai [p], j, Ax ? Ax [p] : 1, other)){if (Ax) Ax [nz] = Ax [p] ; /* keep A(i,j) */Ai [nz++] = Ai [p] ;}}}Ap [n] = nz ; /* finalize A */cs_sprealloc (A, 0) ; /* remove extra space from A */return (nz) ;}/* compute the etree of A (using triu(A), or A'A without forming A'A */int *cs_etree (const cs *A, int ata){int i, k, p, m, n, inext, *Ap, *Ai, *w, *parent, *ancestor, *prev ;if (!CS_CSC (A)) return (NULL) ; /* check inputs */m = A->m ; n = A->n ; Ap = A->p ; Ai = A->i ;parent = cs_malloc (n, sizeof (int)) ; /* allocate result */w = cs_malloc (n + (ata ? m : 0), sizeof (int)) ; /* get workspace */if (!w || !parent) return (cs_idone (parent, NULL, w, 0)) ;ancestor = w ; prev = w + n ;if (ata) for (i = 0 ; i < m ; i++) prev [i] = -1 ;for (k = 0 ; k < n ; k++){parent [k] = -1 ; /* node k has no parent yet */ancestor [k] = -1 ; /* nor does k have an ancestor */for (p = Ap [k] ; p < Ap [k+1] ; p++){i = ata ? (prev [Ai [p]]) : (Ai [p]) ;for ( ; i != -1 && i < k ; i = inext) /* traverse from i to k */{inext = ancestor [i] ; /* inext = ancestor of i */ancestor [i] = k ; /* path compression */if (inext == -1) parent [i] = k ; /* no anc., parent is k */}if (ata) prev [Ai [p]] = k ;}}return (cs_idone (parent, NULL, w, 1)) ;}/* find nonzero pattern of Cholesky L(k,1:k-1) using etree and triu(A(:,k)) */int cs_ereach (const cs *A, int k, const int *parent, int *s, int *w){int i, p, n, len, top, *Ap, *Ai ;if (!CS_CSC (A) || !parent || !s || !w) return (-1) ; /* check inputs */top = n = A->n ; Ap = A->p ; Ai = A->i ;CS_MARK (w, k) ; /* mark node k as visited */for (p = Ap [k] ; p < Ap [k+1] ; p++){i = Ai [p] ; /* A(i,k) is nonzero */if (i > k) continue ; /* only use upper triangular part of A */for (len = 0 ; !CS_MARKED (w,i) ; i = parent [i]) /* traverse up etree*/{s [len++] = i ; /* L(k,i) is nonzero */CS_MARK (w, i) ; /* mark i as visited */}while (len > 0) s [--top] = s [--len] ; /* push path onto stack */}for (p = top ; p < n ; p++) CS_MARK (w, s [p]) ; /* unmark all nodes */CS_MARK (w, k) ; /* unmark node k */return (top) ; /* s [top..n-1] contains pattern of L(k,:)*/}/* add an entry to a triplet matrix; return 1 if ok, 0 otherwise */int cs_entry (cs *T, int i, int j, double x){if (!CS_TRIPLET (T) || i < 0 || j < 0) return (0) ; /* check inputs */if (T->nz >= T->nzmax && !cs_sprealloc (T,2*(T->nzmax))) return (0) ;if (T->x) T->x [T->nz] = x ;T->i [T->nz] = i ;T->p [T->nz++] = j ;T->m = CS_MAX (T->m, i+1) ;T->n = CS_MAX (T->n, j+1) ;return (1) ;}/* remove duplicate entries from A */int cs_dupl (cs *A){int i, j, p, q, nz = 0, n, m, *Ap, *Ai, *w ;double *Ax ;if (!CS_CSC (A)) return (0) ; /* check inputs */m = A->m ; n = A->n ; Ap = A->p ; Ai = A->i ; Ax = A->x ;w = cs_malloc (m, sizeof (int)) ; /* get workspace */if (!w) return (0) ; /* out of memory */for (i = 0 ; i < m ; i++) w [i] = -1 ; /* row i not yet seen */for (j = 0 ; j < n ; j++){q = nz ; /* column j will start at q */for (p = Ap [j] ; p < Ap [j+1] ; p++){i = Ai [p] ; /* A(i,j) is nonzero */if (w [i] >= q){Ax [w [i]] += Ax [p] ; /* A(i,j) is a duplicate */}else{w [i] = nz ; /* record where row i occurs */Ai [nz] = i ; /* keep A(i,j) */Ax [nz++] = Ax [p] ;}}Ap [j] = q ; /* record start of column j */}Ap [n] = nz ; /* finalize A */cs_free (w) ; /* free workspace */return (cs_sprealloc (A, 0)) ; /* remove extra space from A */}static int cs_nonzero (int i, int j, double aij, void *other){return (aij != 0) ;}int cs_dropzeros (cs *A){return (cs_fkeep (A, &cs_nonzero, NULL)) ; /* keep all nonzero entries */}static int cs_tol (int i, int j, double aij, void *tol){return (fabs (aij) > *((double *) tol)) ;}int cs_droptol (cs *A, double tol){return (cs_fkeep (A, &cs_tol, &tol)) ; /* keep all large entries */}/* breadth-first search for coarse decomposition (C0,C1,R1 or R0,R3,C3) */static int cs_bfs (const cs *A, int n, int *wi, int *wj, int *queue,const int *imatch, const int *jmatch, int mark){int *Ap, *Ai, head = 0, tail = 0, j, i, p, j2 ;cs *C ;for (j = 0 ; j < n ; j++) /* place all unmatched nodes in queue */{if (imatch [j] >= 0) continue ; /* skip j if matched */wj [j] = 0 ; /* j in set C0 (R0 if transpose) */queue [tail++] = j ; /* place unmatched col j in queue */}if (tail == 0) return (1) ; /* quick return if no unmatched nodes */C = (mark == 1) ? ((cs *) A) : cs_transpose (A, 0) ;if (!C) return (0) ; /* bfs of C=A' to find R3,C3 from R0 */Ap = C->p ; Ai = C->i ;while (head < tail) /* while queue is not empty */{j = queue [head++] ; /* get the head of the queue */for (p = Ap [j] ; p < Ap [j+1] ; p++){i = Ai [p] ;if (wi [i] >= 0) continue ; /* skip if i is marked */wi [i] = mark ; /* i in set R1 (C3 if transpose) */j2 = jmatch [i] ; /* traverse alternating path to j2 */if (wj [j2] >= 0) continue ;/* skip j2 if it is marked */wj [j2] = mark ; /* j2 in set C1 (R3 if transpose) */queue [tail++] = j2 ; /* add j2 to queue */}}if (mark != 1) cs_spfree (C) ; /* free A' if it was created */return (1) ;}/* collect matched rows and columns into p and q */static void cs_matched (int n, const int *wj, const int *imatch, int *p, int *q,int *cc, int *rr, int set, int mark){int kc = cc [set], j ;int kr = rr [set-1] ;for (j = 0 ; j < n ; j++){if (wj [j] != mark) continue ; /* skip if j is not in C set */p [kr++] = imatch [j] ;q [kc++] = j ;}cc [set+1] = kc ;rr [set] = kr ;}/* collect unmatched rows into the permutation vector p */static void cs_unmatched (int m, const int *wi, int *p, int *rr, int set){int i, kr = rr [set] ;for (i = 0 ; i < m ; i++) if (wi [i] == 0) p [kr++] = i ;rr [set+1] = kr ;}/* return 1 if row i is in R2 */static int cs_rprune (int i, int j, double aij, void *other){int *rr = (int *) other ;return (i >= rr [1] && i < rr [2]) ;}/* Given A, compute coarse and then fine dmperm */csd *cs_dmperm (const cs *A, int seed){int m, n, i, j, k, cnz, nc, *jmatch, *imatch, *wi, *wj, *pinv, *Cp, *Ci,*ps, *rs, nb1, nb2, *p, *q, *cc, *rr, *r, *s, ok ;cs *C ;csd *D, *scc ;/* --- Maximum matching ------------------------------------------------- */if (!CS_CSC (A)) return (NULL) ; /* check inputs */m = A->m ; n = A->n ;D = cs_dalloc (m, n) ; /* allocate result */if (!D) return (NULL) ;p = D->p ; q = D->q ; r = D->r ; s = D->s ; cc = D->cc ; rr = D->rr ;jmatch = cs_maxtrans (A, seed) ; /* max transversal */imatch = jmatch + m ; /* imatch = inverse of jmatch */if (!jmatch) return (cs_ddone (D, NULL, jmatch, 0)) ;/* --- Coarse decomposition --------------------------------------------- */wi = r ; wj = s ; /* use r and s as workspace */for (j = 0 ; j < n ; j++) wj [j] = -1 ; /* unmark all cols for bfs */for (i = 0 ; i < m ; i++) wi [i] = -1 ; /* unmark all rows for bfs */cs_bfs (A, n, wi, wj, q, imatch, jmatch, 1) ; /* find C1, R1 from C0*/ok = cs_bfs (A, m, wj, wi, p, jmatch, imatch, 3) ; /* find R3, C3 from R0*/if (!ok) return (cs_ddone (D, NULL, jmatch, 0)) ;cs_unmatched (n, wj, q, cc, 0) ; /* unmatched set C0 */cs_matched (n, wj, imatch, p, q, cc, rr, 1, 1) ; /* set R1 and C1 */cs_matched (n, wj, imatch, p, q, cc, rr, 2, -1) ; /* set R2 and C2 */cs_matched (n, wj, imatch, p, q, cc, rr, 3, 3) ; /* set R3 and C3 */cs_unmatched (m, wi, p, rr, 3) ; /* unmatched set R0 */cs_free (jmatch) ;/* --- Fine decomposition ----------------------------------------------- */pinv = cs_pinv (p, m) ; /* pinv=p' */if (!pinv) return (cs_ddone (D, NULL, NULL, 0)) ;C = cs_permute (A, pinv, q, 0) ;/* C=A(p,q) (it will hold A(R2,C2)) */cs_free (pinv) ;if (!C) return (cs_ddone (D, NULL, NULL, 0)) ;Cp = C->p ;nc = cc [3] - cc [2] ; /* delete cols C0, C1, and C3 from C */if (cc [2] > 0) for (j = cc [2] ; j <= cc [3] ; j++) Cp [j-cc[2]] = Cp [j] ;C->n = nc ;if (rr [2] - rr [1] < m) /* delete rows R0, R1, and R3 from C */{cs_fkeep (C, cs_rprune, rr) ;cnz = Cp [nc] ;Ci = C->i ;if (rr [1] > 0) for (k = 0 ; k < cnz ; k++) Ci [k] -= rr [1] ;}C->m = nc ;scc = cs_scc (C) ; /* find strongly connected components of C*/if (!scc) return (cs_ddone (D, C, NULL, 0)) ;/* --- Combine coarse and fine decompositions --------------------------- */ps = scc->p ; /* C(ps,ps) is the permuted matrix */rs = scc->r ; /* kth block is rs[k]..rs[k+1]-1 */nb1 = scc->nb ; /* # of blocks of A(R2,C2) */for (k = 0 ; k < nc ; k++) wj [k] = q [ps [k] + cc [2]] ;for (k = 0 ; k < nc ; k++) q [k + cc [2]] = wj [k] ;for (k = 0 ; k < nc ; k++) wi [k] = p [ps [k] + rr [1]] ;for (k = 0 ; k < nc ; k++) p [k + rr [1]] = wi [k] ;nb2 = 0 ; /* create the fine block partitions */r [0] = s [0] = 0 ;if (cc [2] > 0) nb2++ ; /* leading coarse block A (R1, [C0 C1]) */for (k = 0 ; k < nb1 ; k++) /* coarse block A (R2,C2) */{r [nb2] = rs [k] + rr [1] ; /* A (R2,C2) splits into nb1 fine blocks */s [nb2] = rs [k] + cc [2] ;nb2++ ;}if (rr [2] < m){r [nb2] = rr [2] ; /* trailing coarse block A ([R3 R0], C3) */s [nb2] = cc [3] ;nb2++ ;}r [nb2] = m ;s [nb2] = n ;D->nb = nb2 ;cs_dfree (scc) ;return (cs_ddone (D, C, NULL, 1)) ;}/* depth-first-search of the graph of a matrix, starting at node j */int cs_dfs (int j, cs *G, int top, int *xi, int *pstack, const int *pinv){int i, p, p2, done, jnew, head = 0, *Gp, *Gi ;if (!CS_CSC (G) || !xi || !pstack) return (-1) ; /* check inputs */Gp = G->p ; Gi = G->i ;xi [0] = j ; /* initialize the recursion stack */while (head >= 0){j = xi [head] ; /* get j from the top of the recursion stack */jnew = pinv ? (pinv [j]) : j ;if (!CS_MARKED (Gp, j)){CS_MARK (Gp, j) ; /* mark node j as visited */pstack [head] = (jnew < 0) ? 0 : CS_UNFLIP (Gp [jnew]) ;}done = 1 ; /* node j done if no unvisited neighbors */p2 = (jnew < 0) ? 0 : CS_UNFLIP (Gp [jnew+1]) ;for (p = pstack [head] ; p < p2 ; p++) /* examine all neighbors of j */{i = Gi [p] ; /* consider neighbor node i */if (CS_MARKED (Gp, i)) continue ; /* skip visited node i */pstack [head] = p ; /* pause depth-first search of node j */xi [++head] = i ; /* start dfs at node i */done = 0 ; /* node j is not done */break ; /* break, to start dfs (i) */}if (done) /* depth-first search at node j is done */{head-- ; /* remove j from the recursion stack */xi [--top] = j ; /* and place in the output stack */}}return (top) ;}/* p [0..n] = cumulative sum of c [0..n-1], and then copy p [0..n-1] into c */double cs_cumsum (int *p, int *c, int n){int i, nz = 0 ;double nz2 = 0 ;if (!p || !c) return (-1) ; /* check inputs */for (i = 0 ; i < n ; i++){p [i] = nz ;nz += c [i] ;nz2 += c [i] ; /* also in double to avoid int overflow */c [i] = p [i] ; /* also copy p[0..n-1] back into c[0..n-1]*/}p [n] = nz ;return (nz2) ; /* return sum (c [0..n-1]) */}/* column counts of LL'=A or LL'=A'A, given parent & post ordering */#define HEAD(k,j) (ata ? head [k] : j)#define NEXT(J) (ata ? next [J] : -1)static void init_ata (cs *AT, const int *post, int *w, int **head, int **next){int i, k, p, m = AT->n, n = AT->m, *ATp = AT->p, *ATi = AT->i ;*head = w+4*n, *next = w+5*n+1 ;for (k = 0 ; k < n ; k++) w [post [k]] = k ; /* invert post */for (i = 0 ; i < m ; i++){for (k = n, p = ATp[i] ; p < ATp[i+1] ; p++) k = CS_MIN (k, w [ATi[p]]);(*next) [i] = (*head) [k] ; /* place row i in linked list k */(*head) [k] = i ;}}int *cs_counts (const cs *A, const int *parent, const int *post, int ata){int i, j, k, n, m, J, s, p, q, jleaf, *ATp, *ATi, *maxfirst, *prevleaf,*ancestor, *head = NULL, *next = NULL, *colcount, *w, *first, *delta ;cs *AT ;if (!CS_CSC (A) || !parent || !post) return (NULL) ; /* check inputs */m = A->m ; n = A->n ;s = 4*n + (ata ? (n+m+1) : 0) ;delta = colcount = cs_malloc (n, sizeof (int)) ; /* allocate result */w = cs_malloc (s, sizeof (int)) ; /* get workspace */AT = cs_transpose (A, 0) ; /* AT = A' */if (!AT || !colcount || !w) return (cs_idone (colcount, AT, w, 0)) ;ancestor = w ; maxfirst = w+n ; prevleaf = w+2*n ; first = w+3*n ;for (k = 0 ; k < s ; k++) w [k] = -1 ; /* clear workspace w [0..s-1] */for (k = 0 ; k < n ; k++) /* find first [j] */{j = post [k] ;delta [j] = (first [j] == -1) ? 1 : 0 ; /* delta[j]=1 if j is a leaf */for ( ; j != -1 && first [j] == -1 ; j = parent [j]) first [j] = k ;}ATp = AT->p ; ATi = AT->i ;if (ata) init_ata (AT, post, w, &head, &next) ;for (i = 0 ; i < n ; i++) ancestor [i] = i ; /* each node in its own set */for (k = 0 ; k < n ; k++){j = post [k] ; /* j is the kth node in postordered etree */if (parent [j] != -1) delta [parent [j]]-- ; /* j is not a root */for (J = HEAD (k,j) ; J != -1 ; J = NEXT (J)) /* J=j for LL'=A case */{for (p = ATp [J] ; p < ATp [J+1] ; p++){i = ATi [p] ;q = cs_leaf (i, j, first, maxfirst, prevleaf, ancestor, &jleaf);if (jleaf >= 1) delta [j]++ ; /* A(i,j) is in skeleton */if (jleaf == 2) delta [q]-- ; /* account for overlap in q */}}if (parent [j] != -1) ancestor [j] = parent [j] ;}for (j = 0 ; j < n ; j++) /* sum up delta's of each child */{if (parent [j] != -1) colcount [parent [j]] += colcount [j] ;}return (cs_idone (colcount, AT, w, 1)) ; /* success: free workspace */}/* C = compressed-column form of a triplet matrix T */cs *cs_compress (const cs *T){int m, n, nz, p, k, *Cp, *Ci, *w, *Ti, *Tj ;double *Cx, *Tx ;cs *C ;if (!CS_TRIPLET (T)) return (NULL) ; /* check inputs */m = T->m ; n = T->n ; Ti = T->i ; Tj = T->p ; Tx = T->x ; nz = T->nz ;C = cs_spalloc (m, n, nz, Tx != NULL, 0) ; /* allocate result */w = cs_calloc (n, sizeof (int)) ; /* get workspace */if (!C || !w) return (cs_done (C, w, NULL, 0)) ; /* out of memory */Cp = C->p ; Ci = C->i ; Cx = C->x ;for (k = 0 ; k < nz ; k++) w [Tj [k]]++ ; /* column counts */cs_cumsum (Cp, w, n) ; /* column pointers */for (k = 0 ; k < nz ; k++){Ci [p = w [Tj [k]]++] = Ti [k] ; /* A(i,j) is the pth entry in C */if (Cx) Cx [p] = Tx [k] ;}return (cs_done (C, w, NULL, 1)) ; /* success; free w and return C */}/* x=A\b where A is symmetric positive definite; b overwritten with solution */int cs_cholsol (int order, const cs *A, double *b){double *x ;css *S ;csn *N ;int n, ok ;if (!CS_CSC (A) || !b) return (0) ; /* check inputs */n = A->n ;S = cs_schol (order, A) ; /* ordering and symbolic analysis */N = cs_chol (A, S) ; /* numeric Cholesky factorization */x = cs_malloc (n, sizeof (double)) ; /* get workspace */ok = (S && N && x) ;if (ok){cs_ipvec (S->pinv, b, x, n) ; /* x = P*b */cs_lsolve (N->L, x) ; /* x = L\x */cs_ltsolve (N->L, x) ; /* x = L'\x */cs_pvec (S->pinv, x, b, n) ; /* b = P'*x */}cs_free (x) ;cs_sfree (S) ;cs_nfree (N) ;return (ok) ;}/* L = chol (A, [pinv parent cp]), pinv is optional */csn *cs_chol (const cs *A, const css *S){double d, lki, *Lx, *x, *Cx ;int top, i, p, k, n, *Li, *Lp, *cp, *pinv, *s, *c, *parent, *Cp, *Ci ;cs *L, *C, *E ;csn *N ;if (!CS_CSC (A) || !S || !S->cp || !S->parent) return (NULL) ;n = A->n ;N = cs_calloc (1, sizeof (csn)) ; /* allocate result */c = cs_malloc (2*n, sizeof (int)) ; /* get int workspace */x = cs_malloc (n, sizeof (double)) ; /* get double workspace */cp = S->cp ; pinv = S->pinv ; parent = S->parent ;C = pinv ? cs_symperm (A, pinv, 1) : ((cs *) A) ;E = pinv ? C : NULL ; /* E is alias for A, or a copy E=A(p,p) */if (!N || !c || !x || !C) return (cs_ndone (N, E, c, x, 0)) ;s = c + n ;Cp = C->p ; Ci = C->i ; Cx = C->x ;N->L = L = cs_spalloc (n, n, cp [n], 1, 0) ; /* allocate result */if (!L) return (cs_ndone (N, E, c, x, 0)) ;Lp = L->p ; Li = L->i ; Lx = L->x ;for (k = 0 ; k < n ; k++) Lp [k] = c [k] = cp [k] ;for (k = 0 ; k < n ; k++) /* compute L(:,k) for L*L' = C */{/* --- Nonzero pattern of L(k,:) ------------------------------------ */top = cs_ereach (C, k, parent, s, c) ; /* find pattern of L(k,:) */x [k] = 0 ; /* x (0:k) is now zero */for (p = Cp [k] ; p < Cp [k+1] ; p++) /* x = full(triu(C(:,k))) */{if (Ci [p] <= k) x [Ci [p]] = Cx [p] ;}d = x [k] ; /* d = C(k,k) */x [k] = 0 ; /* clear x for k+1st iteration *//* --- Triangular solve --------------------------------------------- */for ( ; top < n ; top++) /* solve L(0:k-1,0:k-1) * x = C(:,k) */{i = s [top] ; /* s [top..n-1] is pattern of L(k,:) */lki = x [i] / Lx [Lp [i]] ; /* L(k,i) = x (i) / L(i,i) */x [i] = 0 ; /* clear x for k+1st iteration */for (p = Lp [i] + 1 ; p < c [i] ; p++){x [Li [p]] -= Lx [p] * lki ;}d -= lki * lki ; /* d = d - L(k,i)*L(k,i) */p = c [i]++ ;Li [p] = k ; /* store L(k,i) in column i */Lx [p] = lki ;}/* --- Compute L(k,k) ----------------------------------------------- */if (d <= 0) return (cs_ndone (N, E, c, x, 0)) ; /* not pos def */p = c [k]++ ;Li [p] = k ; /* store L(k,k) = sqrt (d) in column k */Lx [p] = sqrt (d) ;}Lp [n] = cp [n] ; /* finalize L */return (cs_ndone (N, E, c, x, 1)) ; /* success: free E,s,x; return N */}/* clear w */static int cs_wclear (int mark, int lemax, int *w, int n){int k ;if (mark < 2 || (mark + lemax < 0)){for (k = 0 ; k < n ; k++) if (w [k] != 0) w [k] = 1 ;mark = 2 ;}return (mark) ; /* at this point, w [0..n-1] < mark holds */}/* keep off-diagonal entries; drop diagonal entries */static int cs_diag (int i, int j, double aij, void *other) { return (i != j) ; }/* p = amd(A+A') if symmetric is true, or amd(A'A) otherwise */int *cs_amd (int order, const cs *A) /* order 0:natural, 1:Chol, 2:LU, 3:QR */{cs *C, *A2, *AT ;int *Cp, *Ci, *last, *W, *len, *nv, *next, *P, *head, *elen, *degree, *w,*hhead, *ATp, *ATi, d, dk, dext, lemax = 0, e, elenk, eln, i, j, k, k1,k2, k3, jlast, ln, dense, nzmax, mindeg = 0, nvi, nvj, nvk, mark, wnvi,ok, cnz, nel = 0, p, p1, p2, p3, p4, pj, pk, pk1, pk2, pn, q, n, m, t ;unsigned int h ;/* --- Construct matrix C ----------------------------------------------- */if (!CS_CSC (A) || order <= 0 || order > 3) return (NULL) ; /* check */AT = cs_transpose (A, 0) ; /* compute A' */if (!AT) return (NULL) ;m = A->m ; n = A->n ;dense = CS_MAX (16, 10 * sqrt ((double) n)) ; /* find dense threshold */dense = CS_MIN (n-2, dense) ;if (order == 1 && n == m){C = cs_add (A, AT, 0, 0) ; /* C = A+A' */}else if (order == 2){ATp = AT->p ; /* drop dense columns from AT */ATi = AT->i ;for (p2 = 0, j = 0 ; j < m ; j++){p = ATp [j] ; /* column j of AT starts here */ATp [j] = p2 ; /* new column j starts here */if (ATp [j+1] - p > dense) continue ; /* skip dense col j */for ( ; p < ATp [j+1] ; p++) ATi [p2++] = ATi [p] ;}ATp [m] = p2 ; /* finalize AT */A2 = cs_transpose (AT, 0) ; /* A2 = AT' */C = A2 ? cs_multiply (AT, A2) : NULL ; /* C=A'*A with no dense rows */cs_spfree (A2) ;}else{C = cs_multiply (AT, A) ; /* C=A'*A */}cs_spfree (AT) ;if (!C) return (NULL) ;cs_fkeep (C, &cs_diag, NULL) ; /* drop diagonal entries */Cp = C->p ;cnz = Cp [n] ;P = cs_malloc (n+1, sizeof (int)) ; /* allocate result */W = cs_malloc (8*(n+1), sizeof (int)) ; /* get workspace */t = cnz + cnz/5 + 2*n ; /* add elbow room to C */if (!P || !W || !cs_sprealloc (C, t)) return (cs_idone (P, C, W, 0)) ;len = W ; nv = W + (n+1) ; next = W + 2*(n+1) ;head = W + 3*(n+1) ; elen = W + 4*(n+1) ; degree = W + 5*(n+1) ;w = W + 6*(n+1) ; hhead = W + 7*(n+1) ;last = P ; /* use P as workspace for last *//* --- Initialize quotient graph ---------------------------------------- */for (k = 0 ; k < n ; k++) len [k] = Cp [k+1] - Cp [k] ;len [n] = 0 ;nzmax = C->nzmax ;Ci = C->i ;for (i = 0 ; i <= n ; i++){head [i] = -1 ; /* degree list i is empty */last [i] = -1 ;next [i] = -1 ;hhead [i] = -1 ; /* hash list i is empty */nv [i] = 1 ; /* node i is just one node */w [i] = 1 ; /* node i is alive */elen [i] = 0 ; /* Ek of node i is empty */degree [i] = len [i] ; /* degree of node i */}mark = cs_wclear (0, 0, w, n) ; /* clear w */elen [n] = -2 ; /* n is a dead element */Cp [n] = -1 ; /* n is a root of assembly tree */w [n] = 0 ; /* n is a dead element *//* --- Initialize degree lists ------------------------------------------ */for (i = 0 ; i < n ; i++){d = degree [i] ;if (d == 0) /* node i is empty */{elen [i] = -2 ; /* element i is dead */nel++ ;Cp [i] = -1 ; /* i is a root of assembly tree */w [i] = 0 ;}else if (d > dense) /* node i is dense */{nv [i] = 0 ; /* absorb i into element n */elen [i] = -1 ; /* node i is dead */nel++ ;Cp [i] = CS_FLIP (n) ;nv [n]++ ;}else{if (head [d] != -1) last [head [d]] = i ;next [i] = head [d] ; /* put node i in degree list d */head [d] = i ;}}while (nel < n) /* while (selecting pivots) do */{/* --- Select node of minimum approximate degree -------------------- */for (k = -1 ; mindeg < n && (k = head [mindeg]) == -1 ; mindeg++) ;if (next [k] != -1) last [next [k]] = -1 ;head [mindeg] = next [k] ; /* remove k from degree list */elenk = elen [k] ; /* elenk = |Ek| */nvk = nv [k] ; /* # of nodes k represents */nel += nvk ; /* nv[k] nodes of A eliminated *//* --- Garbage collection ------------------------------------------- */if (elenk > 0 && cnz + mindeg >= nzmax){for (j = 0 ; j < n ; j++){if ((p = Cp [j]) >= 0) /* j is a live node or element */{Cp [j] = Ci [p] ; /* save first entry of object */Ci [p] = CS_FLIP (j) ; /* first entry is now CS_FLIP(j) */}}for (q = 0, p = 0 ; p < cnz ; ) /* scan all of memory */{if ((j = CS_FLIP (Ci [p++])) >= 0) /* found object j */{Ci [q] = Cp [j] ; /* restore first entry of object */Cp [j] = q++ ; /* new pointer to object j */for (k3 = 0 ; k3 < len [j]-1 ; k3++) Ci [q++] = Ci [p++] ;}}cnz = q ; /* Ci [cnz...nzmax-1] now free */}/* --- Construct new element ---------------------------------------- */dk = 0 ;nv [k] = -nvk ; /* flag k as in Lk */p = Cp [k] ;pk1 = (elenk == 0) ? p : cnz ; /* do in place if elen[k] == 0 */pk2 = pk1 ;for (k1 = 1 ; k1 <= elenk + 1 ; k1++){if (k1 > elenk){e = k ; /* search the nodes in k */pj = p ; /* list of nodes starts at Ci[pj]*/ln = len [k] - elenk ; /* length of list of nodes in k */}else{e = Ci [p++] ; /* search the nodes in e */pj = Cp [e] ;ln = len [e] ; /* length of list of nodes in e */}for (k2 = 1 ; k2 <= ln ; k2++){i = Ci [pj++] ;if ((nvi = nv [i]) <= 0) continue ; /* node i dead, or seen */dk += nvi ; /* degree[Lk] += size of node i */nv [i] = -nvi ; /* negate nv[i] to denote i in Lk*/Ci [pk2++] = i ; /* place i in Lk */if (next [i] != -1) last [next [i]] = last [i] ;if (last [i] != -1) /* remove i from degree list */{next [last [i]] = next [i] ;}else{head [degree [i]] = next [i] ;}}if (e != k){Cp [e] = CS_FLIP (k) ; /* absorb e into k */w [e] = 0 ; /* e is now a dead element */}}if (elenk != 0) cnz = pk2 ; /* Ci [cnz...nzmax] is free */degree [k] = dk ; /* external degree of k - |Lk\i| */Cp [k] = pk1 ; /* element k is in Ci[pk1..pk2-1] */len [k] = pk2 - pk1 ;elen [k] = -2 ; /* k is now an element *//* --- Find set differences ----------------------------------------- */mark = cs_wclear (mark, lemax, w, n) ; /* clear w if necessary */for (pk = pk1 ; pk < pk2 ; pk++) /* scan 1: find |Le\Lk| */{i = Ci [pk] ;if ((eln = elen [i]) <= 0) continue ;/* skip if elen[i] empty */nvi = -nv [i] ; /* nv [i] was negated */wnvi = mark - nvi ;for (p = Cp [i] ; p <= Cp [i] + eln - 1 ; p++) /* scan Ei */{e = Ci [p] ;if (w [e] >= mark){w [e] -= nvi ; /* decrement |Le\Lk| */}else if (w [e] != 0) /* ensure e is a live element */{w [e] = degree [e] + wnvi ; /* 1st time e seen in scan 1 */}}}/* --- Degree update ------------------------------------------------ */for (pk = pk1 ; pk < pk2 ; pk++) /* scan2: degree update */{i = Ci [pk] ; /* consider node i in Lk */p1 = Cp [i] ;p2 = p1 + elen [i] - 1 ;pn = p1 ;for (h = 0, d = 0, p = p1 ; p <= p2 ; p++) /* scan Ei */{e = Ci [p] ;if (w [e] != 0) /* e is an unabsorbed element */{dext = w [e] - mark ; /* dext = |Le\Lk| */if (dext > 0){d += dext ; /* sum up the set differences */Ci [pn++] = e ; /* keep e in Ei */h += e ; /* compute the hash of node i */}else{Cp [e] = CS_FLIP (k) ; /* aggressive absorb. e->k */w [e] = 0 ; /* e is a dead element */}}}elen [i] = pn - p1 + 1 ; /* elen[i] = |Ei| */p3 = pn ;p4 = p1 + len [i] ;for (p = p2 + 1 ; p < p4 ; p++) /* prune edges in Ai */{j = Ci [p] ;if ((nvj = nv [j]) <= 0) continue ; /* node j dead or in Lk */d += nvj ; /* degree(i) += |j| */Ci [pn++] = j ; /* place j in node list of i */h += j ; /* compute hash for node i */}if (d == 0) /* check for mass elimination */{Cp [i] = CS_FLIP (k) ; /* absorb i into k */nvi = -nv [i] ;dk -= nvi ; /* |Lk| -= |i| */nvk += nvi ; /* |k| += nv[i] */nel += nvi ;nv [i] = 0 ;elen [i] = -1 ; /* node i is dead */}else{degree [i] = CS_MIN (degree [i], d) ; /* update degree(i) */Ci [pn] = Ci [p3] ; /* move first node to end */Ci [p3] = Ci [p1] ; /* move 1st el. to end of Ei */Ci [p1] = k ; /* add k as 1st element in of Ei */len [i] = pn - p1 + 1 ; /* new len of adj. list of node i */h %= n ; /* finalize hash of i */next [i] = hhead [h] ; /* place i in hash bucket */hhead [h] = i ;last [i] = h ; /* save hash of i in last[i] */}} /* scan2 is done */degree [k] = dk ; /* finalize |Lk| */lemax = CS_MAX (lemax, dk) ;mark = cs_wclear (mark+lemax, lemax, w, n) ; /* clear w *//* --- Supernode detection ------------------------------------------ */for (pk = pk1 ; pk < pk2 ; pk++){i = Ci [pk] ;if (nv [i] >= 0) continue ; /* skip if i is dead */h = last [i] ; /* scan hash bucket of node i */i = hhead [h] ;hhead [h] = -1 ; /* hash bucket will be empty */for ( ; i != -1 && next [i] != -1 ; i = next [i], mark++){ln = len [i] ;eln = elen [i] ;for (p = Cp [i]+1 ; p <= Cp [i] + ln-1 ; p++) w [Ci [p]] = mark;jlast = i ;for (j = next [i] ; j != -1 ; ) /* compare i with all j */{ok = (len [j] == ln) && (elen [j] == eln) ;for (p = Cp [j] + 1 ; ok && p <= Cp [j] + ln - 1 ; p++){if (w [Ci [p]] != mark) ok = 0 ; /* compare i and j*/}if (ok) /* i and j are identical */{Cp [j] = CS_FLIP (i) ; /* absorb j into i */nv [i] += nv [j] ;nv [j] = 0 ;elen [j] = -1 ; /* node j is dead */j = next [j] ; /* delete j from hash bucket */next [jlast] = j ;}else{jlast = j ; /* j and i are different */j = next [j] ;}}}}/* --- Finalize new element------------------------------------------ */for (p = pk1, pk = pk1 ; pk < pk2 ; pk++) /* finalize Lk */{i = Ci [pk] ;if ((nvi = -nv [i]) <= 0) continue ;/* skip if i is dead */nv [i] = nvi ; /* restore nv[i] */d = degree [i] + dk - nvi ; /* compute external degree(i) */d = CS_MIN (d, n - nel - nvi) ;if (head [d] != -1) last [head [d]] = i ;next [i] = head [d] ; /* put i back in degree list */last [i] = -1 ;head [d] = i ;mindeg = CS_MIN (mindeg, d) ; /* find new minimum degree */degree [i] = d ;Ci [p++] = i ; /* place i in Lk */}nv [k] = nvk ; /* # nodes absorbed into k */if ((len [k] = p-pk1) == 0) /* length of adj list of element k*/{Cp [k] = -1 ; /* k is a root of the tree */w [k] = 0 ; /* k is now a dead element */}if (elenk != 0) cnz = p ; /* free unused space in Lk */}/* --- Postordering ----------------------------------------------------- */for (i = 0 ; i < n ; i++) Cp [i] = CS_FLIP (Cp [i]) ;/* fix assembly tree */for (j = 0 ; j <= n ; j++) head [j] = -1 ;for (j = n ; j >= 0 ; j--) /* place unordered nodes in lists */{if (nv [j] > 0) continue ; /* skip if j is an element */next [j] = head [Cp [j]] ; /* place j in list of its parent */head [Cp [j]] = j ;}for (e = n ; e >= 0 ; e--) /* place elements in lists */{if (nv [e] <= 0) continue ; /* skip unless e is an element */if (Cp [e] != -1){next [e] = head [Cp [e]] ; /* place e in list of its parent */head [Cp [e]] = e ;}}for (k = 0, i = 0 ; i <= n ; i++) /* postorder the assembly tree */{if (Cp [i] == -1) k = cs_tdfs (i, k, head, next, P, w) ;}return (cs_idone (P, C, W, 1)) ;}/* C = alpha*A + beta*B */cs *cs_add (const cs *A, const cs *B, double alpha, double beta){int p, j, nz = 0, anz, *Cp, *Ci, *Bp, m, n, bnz, *w, values ;double *x, *Bx, *Cx ;cs *C ;if (!CS_CSC (A) || !CS_CSC (B)) return (NULL) ; /* check inputs */m = A->m ; anz = A->p [A->n] ;n = B->n ; Bp = B->p ; Bx = B->x ; bnz = Bp [n] ;w = cs_calloc (m, sizeof (int)) ; /* get workspace */values = (A->x != NULL) && (Bx != NULL) ;x = values ? cs_malloc (m, sizeof (double)) : NULL ; /* get workspace */C = cs_spalloc (m, n, anz + bnz, values, 0) ; /* allocate result*/if (!C || !w || (values && !x)) return (cs_done (C, w, x, 0)) ;Cp = C->p ; Ci = C->i ; Cx = C->x ;for (j = 0 ; j < n ; j++){Cp [j] = nz ; /* column j of C starts here */nz = cs_scatter (A, j, alpha, w, x, j+1, C, nz) ; /* alpha*A(:,j)*/nz = cs_scatter (B, j, beta, w, x, j+1, C, nz) ; /* beta*B(:,j) */if (values) for (p = Cp [j] ; p < nz ; p++) Cx [p] = x [Ci [p]] ;}Cp [n] = nz ; /* finalize the last column of C */cs_sprealloc (C, 0) ; /* remove extra space from C */return (cs_done (C, w, x, 1)) ; /* success; free workspace, return C */}