R-packages – /trunk/Matrix/src/Mutils.h

Rev 4973 – + forgotten Rversion.h

maechler — Tue, 04 Mar 2008 22:01:33 +0000

maechler – 1 file(s) modified
+ forgotten Rversion.h

~ /trunk/Matrix/src/Mutils.h

Rev 4972 – use diagU2N in more places; also new Tsparse_diagU2N()

maechler — Tue, 04 Mar 2008 21:44:41 +0000

maechler – 21 file(s) modified
use diagU2N in more places; also new Tsparse_diagU2N()

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/src/Tsparse.h
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/TODO

Rev 4969 – s/norm_type/La_norm_type/ in order to move to R-devel

maechler — Mon, 03 Mar 2008 14:35:25 +0000

maechler – 7 file(s) modified
s/norm_type/La_norm_type/ in order to move to R-devel

~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 4963 – + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band ...

maechler — Sat, 23 Feb 2008 09:23:17 +0000

maechler – 55 file(s) modified
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods; Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
+ /trunk/Matrix/inst/doc/Design-issues.Rnw
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
+ /trunk/Matrix/man/forceSymmetric.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/bind2.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/symmetricMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/TMatrix_as.c
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 4953 – miscellaneous cleanup; typically indexing and coercion

maechler — Mon, 18 Feb 2008 08:27:41 +0000

maechler – 25 file(s) modified
miscellaneous cleanup; typically indexing and coercion

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/triangularMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 4901 – Documentation errors caught by doxygen

bates — Sat, 12 Jan 2008 16:09:01 +0000

bates – 4 file(s) modified
Documentation errors caught by doxygen

~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/sparseQR.c

Rev 4758 – make alloca working for Sun

maechler — Sat, 01 Sep 2007 20:37:11 +0000

maechler – 3 file(s) modified
make alloca working for Sun

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/src/Mutils.h

Rev 4734 – Remove deprecated function writeHB and its methods; switch writeMM to ...

bates — Tue, 14 Aug 2007 22:22:24 +0000

bates – 20 file(s) modified
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

~ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/DEPS.mkf
x /trunk/Matrix/src/HBMM.c
x /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/mmio.c
x /trunk/Matrix/src/mmio.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 4730 – declare alloca

bates — Tue, 14 Aug 2007 13:07:10 +0000

bates – 1 file(s) modified
declare alloca

~ /trunk/Matrix/src/Mutils.h

Rev 4565 – merge 'branches/Matrix-APIchange' back into the trunk

maechler — Fri, 06 Jul 2007 16:54:43 +0000

maechler – 29 file(s) modified
merge 'branches/Matrix-APIchange' back into the trunk

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/inst/include/Matrix.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/CHMfactor.c
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/cs_utils.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/HBMM.c
x /trunk/Matrix/src/iohb.c
x /trunk/Matrix/src/iohb.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/sparseQR.c
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/src/t_gCMatrix_colSums.c

Rev 4418 – Remove warnings after change to const char* CHAR

bates — Mon, 04 Jun 2007 17:13:02 +0000

bates – 20 file(s) modified
Remove warnings after change to const char* CHAR

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dpoMatrix.c
~ /trunk/Matrix/src/dpoMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/HBMM.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c

Rev 4104 – many more coercions for diag(), "!", etc; see ChangeLog

maechler — Mon, 29 Jan 2007 20:17:33 +0000

maechler – 72 file(s) modified
many more coercions for diag(), "!", etc; see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/bdiag.Rd
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/Diagonal.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/nsTMatrix.R
~ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
x /trunk/Matrix/src/dsTMatrix.c
x /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/TMatrix_as.c (copied from /trunk/Matrix/src/dsTMatrix.c@4101)
+ /trunk/Matrix/src/TMatrix_as.h (copied from /trunk/Matrix/src/dsTMatrix.h@4101)
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dtpMatrix.R
~ /trunk/Matrix/tests/simple.R

Rev 4093 – + SET_Dimnames; more dimnames setting and other cosmetic

maechler — Tue, 23 Jan 2007 17:09:41 +0000

maechler – 11 file(s) modified
+ SET_Dimnames; more dimnames setting and other cosmetic

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c

Rev 4082 – accomplished quite a few small FIXMEs; see ChangeLog

maechler — Wed, 17 Jan 2007 08:01:10 +0000

maechler – 22 file(s) modified
accomplished quite a few small FIXMEs; see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3931 – miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

maechler — Fri, 27 Oct 2006 16:58:15 +0000

maechler – 38 file(s) modified
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Hilbert.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 3766 – Move checks on column sorting of CsparseMatrix objects to Csparse_validate

bates — Wed, 13 Sep 2006 14:47:28 +0000

bates – 10 file(s) modified
Move checks on column sorting of CsparseMatrix objects to Csparse_validate

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3755 – new nMatrix and subclasses; lsparse change to have x slot; ...

maechler — Mon, 11 Sep 2006 22:13:07 +0000

maechler – 64 file(s) modified
new nMatrix and subclasses; lsparse change to have x slot; many consequences

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
+ /trunk/Matrix/man/ndenseMatrix-class.Rd
+ /trunk/Matrix/man/ndiMatrix-class.Rd
+ /trunk/Matrix/man/ngeMatrix-class.Rd
+ /trunk/Matrix/man/nMatrix-class.Rd
+ /trunk/Matrix/man/nsparseMatrix-classes.Rd
+ /trunk/Matrix/man/nsyMatrix-class.Rd
+ /trunk/Matrix/man/ntrMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
+ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
+ /trunk/Matrix/R/ndenseMatrix.R
+ /trunk/Matrix/R/ngCMatrix.R
+ /trunk/Matrix/R/ngTMatrix.R
+ /trunk/Matrix/R/nsCMatrix.R
+ /trunk/Matrix/R/nsparseMatrix.R
+ /trunk/Matrix/R/ntCMatrix.R
+ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/ldense.c
~ /trunk/Matrix/src/ldense.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R

Rev 3750 – Move the alloc_d**Matrix utility functions from the Matrix package to ...

bates — Mon, 11 Sep 2006 14:49:05 +0000

bates – 6 file(s) modified
Move the alloc_d**Matrix utility functions from the Matrix package to the lme4 package

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/include/Matrix.h
~ /trunk/Matrix/inst/include/Matrix_stubs.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3702 – Cleanup

bates — Wed, 06 Sep 2006 13:34:03 +0000

bates – 6 file(s) modified
Cleanup

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3678 – Merging changes from Matrix-nolmer branch

bates — Mon, 04 Sep 2006 18:41:34 +0000

bates – 37 file(s) modified
Merging changes from Matrix-nolmer branch

~ /trunk/Matrix/ChangeLog
x /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/BIC.Rd
x /trunk/Matrix/man/fixef.Rd
x /trunk/Matrix/man/hatTrace.Rd
x /trunk/Matrix/man/lmer-class.Rd
x /trunk/Matrix/man/lmer.Rd
x /trunk/Matrix/man/mcmcsamp.Rd
x /trunk/Matrix/man/pedigree-class.Rd
x /trunk/Matrix/man/pedigree.Rd
x /trunk/Matrix/man/ranef.Rd
x /trunk/Matrix/man/sleepstudy.Rd
x /trunk/Matrix/man/VarCorr-class.Rd
x /trunk/Matrix/man/VarCorr.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/lmer.R
x /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/lmer.c
x /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
x /trunk/Matrix/src/pedigree.c
x /trunk/Matrix/src/pedigree.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/Syms.h
x /trunk/Matrix/tests/lmer.R

Rev 3520 – Promotion of %*% and solve to RHS of ddenseMatrix

bates — Tue, 29 Aug 2006 22:30:57 +0000

bates – 25 file(s) modified
Promotion of %*% and solve to RHS of ddenseMatrix

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/Mutils.h

Rev 3518 – Define and use class_P and mMatrix_as_dgeMatrix

bates — Tue, 29 Aug 2006 16:17:27 +0000

bates – 7 file(s) modified
Define and use class_P and mMatrix_as_dgeMatrix

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3503 – Remove sections of code that are no longer used

bates — Sat, 26 Aug 2006 13:00:36 +0000

bates – 8 file(s) modified
Remove sections of code that are no longer used

~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3493 – Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

bates — Thu, 24 Aug 2006 21:59:49 +0000

bates – 2 file(s) modified
Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3484 – eliminate classed argument from dup_mM*() and dependencies

maechler — Thu, 24 Aug 2006 16:21:18 +0000

maechler – 21 file(s) modified
eliminate classed argument from dup_mM*() and dependencies

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/sparseQR.c
~ /trunk/Matrix/src/sparseQR.h

Rev 3463 – Move check_class to Mutils.h and some bug fixes

bates — Tue, 22 Aug 2006 22:44:14 +0000

bates – 2 file(s) modified
Move check_class to Mutils.h and some bug fixes

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Mutils.h

Rev 3437 – Added dup_mMatrix_as_dgeMatrix utility

bates — Sun, 20 Aug 2006 03:15:25 +0000

bates – 2 file(s) modified
Added dup_mMatrix_as_dgeMatrix utility

~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3433 – add comment on why Rdefines.h

maechler — Sat, 19 Aug 2006 12:16:16 +0000

maechler – 2 file(s) modified
add comment on why Rdefines.h

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/src/Mutils.h

Rev 2254 – make_(triangular|symmetric) : now for ldense as well

maechler — Mon, 23 Jan 2006 16:01:20 +0000

maechler – 10 file(s) modified
make*_(triangular|symmetric) : now for ldense* as well

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/ldense.c
~ /trunk/Matrix/src/ldense.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 2197 – new dMatrix_validate and dense_nonpacked_validate

maechler — Sat, 14 Jan 2006 23:40:42 +0000

maechler – 7 file(s) modified
new dMatrix_validate and dense_nonpacked_validate

~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 2194 – Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

bates — Fri, 13 Jan 2006 23:47:38 +0000

bates – 10 file(s) modified
Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/lmer.R

Rev 1876 – Modifications to mer2

bates — Mon, 03 Oct 2005 01:44:56 +0000

bates – 9 file(s) modified
Modifications to mer2

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1864 – packed_to_full_(double|int) and full_to_packed_*

maechler — Wed, 28 Sep 2005 19:19:19 +0000

maechler – 7 file(s) modified
packed_to_full_(double|int) and full_to_packed_*

~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/ldense.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1862 – use uplo_P() and diag_P() macros instead of *_value() functions

maechler — Wed, 28 Sep 2005 12:42:51 +0000

maechler – 15 file(s) modified
use uplo_P() and diag_P() macros instead of *_value() functions

~ /trunk/Matrix/src/dpoMatrix.c
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/HBMM.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1854 – + uplo_value(), diag_value()

maechler — Wed, 28 Sep 2005 08:52:22 +0000

maechler – 2 file(s) modified
+ uplo_value(), diag_value()

~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1781 – add triangularMatrix_validate and symmetric* to C code and make (re!)use ...

maechler — Thu, 01 Sep 2005 17:18:08 +0000

maechler – 12 file(s) modified
add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?

~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/dpoMatrix.Rout.save

Rev 1735 – Coercion method for graphNEL to sparseMatrix class

bates — Thu, 18 Aug 2005 21:31:07 +0000

bates – 9 file(s) modified
Coercion method for graphNEL to sparseMatrix class

~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1631 – Added utilities vecSum and vecIncrement

bates — Mon, 04 Jul 2005 14:57:28 +0000

bates – 1 file(s) modified
Added utilities vecSum and vecIncrement

~ /trunk/Matrix/src/Mutils.h

Rev 1577 – Isolating and cleaning up the mer, lmer, and glmer functions

bates — Tue, 07 Jun 2005 23:03:34 +0000

bates – 5 file(s) modified
Isolating and cleaning up the mer, lmer, and glmer functions

~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1536 – Added Matrix_expand_pointers (callable from R) and moved utility for duplicating ...

bates — Tue, 17 May 2005 17:25:31 +0000

bates – 2 file(s) modified
Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots

~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

R-packages – /trunk/Matrix/src/Mutils.h

Rev 4973 – + forgotten Rversion.h

Rev 4972 – use diagU2N in more places; also new Tsparse_diagU2N()

Rev 4969 – s/norm_type/La_norm_type/ in order to move to R-devel

Rev 4963 – + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band ...

Rev 4953 – miscellaneous cleanup; typically indexing and coercion

Rev 4901 – Documentation errors caught by doxygen

Rev 4758 – make alloca working for Sun

Rev 4734 – Remove deprecated function writeHB and its methods; switch writeMM to ...

Rev 4730 – declare alloca

Rev 4565 – merge 'branches/Matrix-APIchange' back into the trunk

Rev 4418 – Remove warnings after change to const char* CHAR

Rev 4104 – many more coercions for diag(), "!", etc; see ChangeLog

Rev 4093 – + SET_Dimnames; more dimnames setting and other cosmetic

Rev 4082 – accomplished quite a few small FIXMEs; see ChangeLog

Rev 3931 – miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Rev 3766 – Move checks on column sorting of CsparseMatrix objects to Csparse_validate

Rev 3755 – new nMatrix and subclasses; lsparse change to have x slot; ...

Rev 3750 – Move the alloc_d**Matrix utility functions from the Matrix package to ...

Rev 3702 – Cleanup

Rev 3678 – Merging changes from Matrix-nolmer branch

Rev 3520 – Promotion of %*% and solve to RHS of ddenseMatrix

Rev 3518 – Define and use class_P and mMatrix_as_dgeMatrix

Rev 3503 – Remove sections of code that are no longer used

Rev 3493 – Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.

Rev 3484 – eliminate classed argument from dup_mM*() and dependencies

Rev 3463 – Move check_class to Mutils.h and some bug fixes

Rev 3437 – Added dup_mMatrix_as_dgeMatrix utility

Rev 3433 – add comment on why Rdefines.h

Rev 2254 – make*_(triangular|symmetric) : now for ldense* as well

Rev 2197 – new dMatrix_validate and dense_nonpacked_validate

Rev 2194 – Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs

Rev 1876 – Modifications to mer2

Rev 1864 – packed_to_full_(double|int) and full_to_packed_*

Rev 1862 – use uplo_P() and diag_P() macros instead of *_value() functions

Rev 1854 – + uplo_value(), diag_value()

Rev 1781 – add triangularMatrix_validate and symmetric* to C code and make (re!)use ...

Rev 1735 – Coercion method for graphNEL to sparseMatrix class

Rev 1631 – Added utilities vecSum and vecIncrement

Rev 1577 – Isolating and cleaning up the mer, lmer, and glmer functions

Rev 1536 – Added Matrix_expand_pointers (callable from R) and moved utility for duplicating ...

Rev 2254 – make_(triangular|symmetric) : now for ldense as well