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4976 6717 d 11 h maechler /trunk/Matrix/src/ need La_(norm|rcond)_type definitions also for R-devel {for now}  
/trunk/Matrix/src/Mutils.c
4972 6718 d 21 h maechler /trunk/Matrix/ use diagU2N in more places; also new Tsparse_diagU2N()  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/Tsparse.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
4969 6720 d 5 h maechler /trunk/Matrix/src/ s/norm_type/La_norm_type/ in order to move to R-devel  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
4963 6729 d 10 h maechler /trunk/Matrix/ + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods; Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)  
/trunk/Matrix/inst/doc/Design-issues.Rnw
/trunk/Matrix/man/forceSymmetric.Rd
/trunk/Matrix/.Rbuildignore
/trunk/Matrix/ChangeLog
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/bind2.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/symmetricMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CAex.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/nMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/TMatrix_as.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dense.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/bind.Rout.save
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
4955 6734 d 2 h bates /trunk/Matrix/src/ -Wall additions  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/dense.c
4953 6734 d 11 h maechler /trunk/Matrix/ miscellaneous cleanup; typically indexing and coercion  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/triangularMatrix.R
/trunk/Matrix/inst/doc/Intro2Matrix.Rnw
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
4901 6771 d 3 h bates /trunk/Matrix/src/ Documentation errors caught by doxygen  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/sparseQR.c
4565 6961 d 2 h maechler /trunk/Matrix/ merge 'branches/Matrix-APIchange' back into the trunk  
/trunk/Matrix/src/iohb.c
/trunk/Matrix/src/iohb.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/inst/doc/Comparisons.Rnw
/trunk/Matrix/inst/include/Matrix.h
/trunk/Matrix/inst/include/Matrix_stubs.c
/trunk/Matrix/src/CHMfactor.c
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/cs_utils.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/factorizations.c
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/t_gCMatrix_colSums.c
4418 6993 d 2 h bates /trunk/Matrix/src/ Remove warnings after change to const char* CHAR  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/Tsparse.c
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dpoMatrix.h
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dppMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dsyMatrix.h
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
4220 7059 d 21 h bates /trunk/Matrix/src/ Consistency of bounds  
/trunk/Matrix/src/Mutils.c
4104 7118 d 23 h maechler /trunk/Matrix/ many more coercions for diag(), "!", etc; see ChangeLog  
/trunk/Matrix/src/TMatrix_as.c
/trunk/Matrix/src/TMatrix_as.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsTMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/bdiag.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/dtpMatrix.R
/trunk/Matrix/tests/simple.R
4082 7131 d 11 h maechler /trunk/Matrix/ accomplished quite a few small FIXMEs; see ChangeLog  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
3931 7213 d 2 h maechler /trunk/Matrix/ miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix  
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Hilbert.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/simple.R
/trunk/Matrix/tests/validObj.R
3790 7252 d 6 h maechler /trunk/Matrix/src/ comments only  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/dense.c
3766 7257 d 4 h bates /trunk/Matrix/src/ Move checks on column sorting of CsparseMatrix objects to Csparse_validate  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/ltCMatrix.c
3750 7259 d 4 h bates /trunk/Matrix/ Move the alloc_d**Matrix utility functions from the Matrix package to the lme4 package  
/trunk/Matrix/ChangeLog
/trunk/Matrix/inst/include/Matrix.h
/trunk/Matrix/inst/include/Matrix_stubs.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/init.c
3702 7264 d 6 h bates /trunk/Matrix/ Cleanup  
/trunk/Matrix/ChangeLog
/trunk/Matrix/INDEX
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
3678 7266 d 1 h bates /trunk/Matrix/ Merging changes from Matrix-nolmer branch  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/pedigree.c
/trunk/Matrix/src/pedigree.h
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h
3518 7272 d 3 h bates /trunk/Matrix/src/ Define and use class_P and mMatrix_as_dgeMatrix  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
3503 7275 d 6 h bates /trunk/Matrix/src/ Remove sections of code that are no longer used  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h

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