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4734 6921 d 19 h bates /trunk/Matrix/ Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM  
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/HBMM.h
/trunk/Matrix/src/mmio.c
/trunk/Matrix/src/mmio.h
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/HBMM.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/man/externalFormats.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Csparse.h
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
4500 6973 d 23 h maechler /trunk/Matrix/ colSums() etc update (fix for lgC*)  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/t_gCMatrix_colSums.c
/trunk/Matrix/tests/simple.R
4496 6975 d 20 h maechler /trunk/Matrix/src/ update + comment  
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/DEPS.mkf_make.sh
/trunk/Matrix/src/dtTMatrix.c
4104 7118 d 21 h maechler /trunk/Matrix/ many more coercions for diag(), "!", etc; see ChangeLog  
/trunk/Matrix/src/TMatrix_as.c
/trunk/Matrix/src/TMatrix_as.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Ops.R
/trunk/Matrix/R/Rsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsTMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/R/ndenseMatrix.R
/trunk/Matrix/R/ngTMatrix.R
/trunk/Matrix/R/nsTMatrix.R
/trunk/Matrix/R/nsparseMatrix.R
/trunk/Matrix/R/ntTMatrix.R
/trunk/Matrix/R/pMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/bdiag.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/ndenseMatrix-class.Rd
/trunk/Matrix/man/nsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/dtpMatrix.R
/trunk/Matrix/tests/simple.R
4103 7119 d 1 h maechler /trunk/Matrix/src/ new DEPS.mkf + reminder on how to  
/trunk/Matrix/src/DEPS.mkf_make.sh
/trunk/Matrix/src/DEPS.mkf
3946 7206 d 23 h maechler /trunk/Matrix/src/ oops -- forgot this update in last revision  
/trunk/Matrix/src/DEPS.mkf
3730 7262 d 4 h bates /trunk/Matrix/src/ Remove dependencies on triplet_to_col and its source files  
/trunk/Matrix/src/triplet_to_col.c
/trunk/Matrix/src/triplet_to_col.h
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/HBMM.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/lsCMatrix.h
3678 7265 d 22 h bates /trunk/Matrix/ Merging changes from Matrix-nolmer branch  
/trunk/Matrix/R/lmer.R
/trunk/Matrix/R/pedigree.R
/trunk/Matrix/data/sleepstudy.rda
/trunk/Matrix/man/BIC.Rd
/trunk/Matrix/man/VarCorr-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/fixef.Rd
/trunk/Matrix/man/hatTrace.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/ranef.Rd
/trunk/Matrix/man/sleepstudy.Rd
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/pedigree.c
/trunk/Matrix/src/pedigree.h
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/Syms.h
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ltCMatrix.c
/trunk/Matrix/src/ltCMatrix.h
3490 7276 d 23 h bates /trunk/Matrix/src/ Replaced R_ldl etc. by CHOLMOD functions  
/trunk/Matrix/src/DEPS.mkf
2173 7501 d 14 h bates /trunk/Matrix/src/ Remove dgBCMatrix.[ch] and dependencies  
/trunk/Matrix/src/dgBCMatrix.c
/trunk/Matrix/src/dgBCMatrix.h
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
1923 7594 d 2 h bates /trunk/Matrix/src/ Remove references to Pattern.[ch]  
/trunk/Matrix/src/DEPS.mkf
1840 7615 d 18 h bates /trunk/Matrix/src/ Updated DEPS.mkf and some include files  
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Makefile.win
/trunk/Matrix/src/dense.h
/trunk/Matrix/src/lmer.h
1548 7738 d 14 h bates /trunk/Matrix/ Release 0.95-10  
/trunk/Matrix/src/sscCrosstab.c
/trunk/Matrix/src/sscCrosstab.h
/trunk/Matrix/src/ssclme.c
/trunk/Matrix/src/ssclme.h
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
1543 7740 d 23 h bates /trunk/Matrix/src/ Fold bCrosstab.[ch] into lmer.[ch]  
/trunk/Matrix/src/DEPS.mkf
1269 7804 d 16 h bates /trunk/Matrix/src/ Coercions and methods for dppMatrix and dspMatrix classes  
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
1202 7816 d 12 h bates /trunk/Matrix/src/ C functions for dtpMatrix class  
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
1190 7818 d 23 h bates /trunk/Matrix/ Internationalization and localization  
/trunk/Matrix/inst/po
/trunk/Matrix/inst/po/LL
/trunk/Matrix/inst/po/LL/LC_MESSAGES
/trunk/Matrix/inst/po/LL/LC_MESSAGES/Matrix.mo
/trunk/Matrix/inst/po/LL/LC_MESSAGES/R-Matrix.mo
/trunk/Matrix/po
/trunk/Matrix/po/Matrix.pot
/trunk/Matrix/po/R-Matrix.pot
/trunk/Matrix/src/LU.c
/trunk/Matrix/src/LU.h
/trunk/Matrix/src/cblas.h
/trunk/Matrix/src/flame.c
/trunk/Matrix/src/flame.h
/trunk/Matrix/src/ldl.c
/trunk/Matrix/src/ldl.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/Doxyfile
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgBCMatrix.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/factorizations.c
/trunk/Matrix/src/factorizations.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/sscCrosstab.c
/trunk/Matrix/src/ssclme.c
/trunk/Matrix/src/triplet_to_col.c
/trunk/Matrix/src/triplet_to_col.h
1110 7830 d 16 h bates /trunk/Matrix/ Coercions and methods for the dsTMatrix class  
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/init.c
1090 7831 d 19 h bates /trunk/Matrix/ Methods and coercions for the dtTMatrix class  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
990 7844 d 21 h bates /trunk/Matrix/ renaming and rearranging classes  
/trunk/Matrix/INDEX
/trunk/Matrix/TODO
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/tests/dpoMatrix.R

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