R-packages – /trunk/Matrix/src/Csparse.c

Rev 3518 – Define and use class_P and mMatrix_as_dgeMatrix

bates — Tue, 29 Aug 2006 16:17:27 +0000

bates – 7 file(s) modified
Define and use class_P and mMatrix_as_dgeMatrix

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 3502 – Move methods to the CsparseMatrix class

bates — Sat, 26 Aug 2006 03:29:36 +0000

bates – 21 file(s) modified
Move methods to the CsparseMatrix class

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h
~ /trunk/Matrix/src/lgTMatrix.c
~ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h
~ /trunk/Matrix/src/ltCMatrix.c

Rev 3466 – use diag_P and uplo_P macros

bates — Tue, 22 Aug 2006 22:49:17 +0000

bates – 1 file(s) modified
use diag_P and uplo_P macros

~ /trunk/Matrix/src/Csparse.c

Rev 3410 – eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

maechler — Tue, 15 Aug 2006 18:21:49 +0000

maechler – 6 file(s) modified
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3406 – Utilities Csparse_to_logical and Csparse_symmetric_to_general

bates — Mon, 14 Aug 2006 21:08:58 +0000

bates – 3 file(s) modified
Utilities Csparse_to_logical and Csparse_symmetric_to_general

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c

Rev 3404 – Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix ...

bates — Mon, 14 Aug 2006 18:54:04 +0000

bates – 10 file(s) modified
Use CHOLMOD code for general methods at CsparseMatrix, TsparseMatrix, denseMatrix or matrix level when possible

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3401 – Generalize conversions

bates — Sat, 12 Aug 2006 17:31:39 +0000

bates – 19 file(s) modified
Generalize conversions

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/src/Tsparse.h

Rev 3388 – crossprod and tcrossprod for TsparseMatrix

bates — Tue, 08 Aug 2006 17:29:03 +0000

bates – 3 file(s) modified
crossprod and tcrossprod for TsparseMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/src/Csparse.c

Rev 3380 – tcrossprod result has stype = -1 (perhaps this should change).

bates — Tue, 08 Aug 2006 14:54:12 +0000

bates – 1 file(s) modified
tcrossprod result has stype = -1 (perhaps this should change).

~ /trunk/Matrix/src/Csparse.c

Rev 3379 – Set stype in C function Csparse_crossprod and avoid R-level conversions

bates — Mon, 07 Aug 2006 18:31:12 +0000

bates – 4 file(s) modified
Set stype in C function Csparse_crossprod and avoid R-level conversions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c

Rev 3139 – single argument [t]crossprod now returns a symmetric matrix

bates — Tue, 16 May 2006 19:12:13 +0000

bates – 6 file(s) modified
single argument [t]crossprod now returns a symmetric matrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/matprod.R

Rev 3134 – Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

bates — Mon, 15 May 2006 22:36:59 +0000

bates – 6 file(s) modified
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c

Rev 2304 – Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the ...

bates — Mon, 20 Feb 2006 22:47:20 +0000

bates – 6 file(s) modified
Used cholmod_vertcat and cholmod_horzcat for cbind2 and rbind2 in the dsparseMatrix virtual class

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c

Rev 2172 – Change malloc to Calloc in chm_common.c and correspondingly free to ...

bates — Thu, 12 Jan 2006 03:02:46 +0000

bates – 8 file(s) modified
Change malloc to Calloc in chm_common.c and correspondingly free to Free there and elsewhere

~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dpoMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/Tsparse.c

Rev 2030 – Added crossprod method for Csparse and dense

bates — Mon, 28 Nov 2005 16:27:29 +0000

bates – 3 file(s) modified
Added crossprod method for Csparse and dense

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c

Rev 2022 – Matrix multiplication and coersion at higher level

bates — Wed, 23 Nov 2005 22:20:13 +0000

bates – 18 file(s) modified
Matrix multiplication and coersion at higher level

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Makefile.win
~ /trunk/Matrix/src/Tsparse.c

Rev 1986 – use free() to clean up after as_cholmod_*() since these ...

maechler — Wed, 09 Nov 2005 15:26:22 +0000

maechler – 4 file(s) modified
use free() to clean up after as_cholmod_*() since these use malloc() - as in Brian`s patch

~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/Tsparse.c

Rev 1870 – check return value from cholmod_aat() {fix seg.fault}

maechler — Sat, 01 Oct 2005 20:08:04 +0000

maechler – 1 file(s) modified
check return value from cholmod_aat() {fix seg.fault}

~ /trunk/Matrix/src/Csparse.c

Rev 1838 – corrected error message

bates — Mon, 19 Sep 2005 21:29:37 +0000

bates – 1 file(s) modified
corrected error message

~ /trunk/Matrix/src/Csparse.c

Rev 1836 – crossprod and tcrossprod for Tsparse

bates — Mon, 19 Sep 2005 21:10:59 +0000

bates – 8 file(s) modified
crossprod and tcrossprod for Tsparse

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/matprod.R

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

maechler — Mon, 19 Sep 2005 19:01:31 +0000

maechler – 44 file(s) modified
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
+ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
+ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dgTMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R

Rev 1831 – More progress on incorporating CHOLMOD - still not passing CMD ...

bates — Sun, 18 Sep 2005 23:41:45 +0000

bates – 10 file(s) modified
More progress on incorporating CHOLMOD - still not passing CMD check

~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/gTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
+ /trunk/Matrix/R/Tsparse.R (copied from /trunk/Matrix/R/gTMatrix.R@1828)
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dgTMatrix.R

Rev 1830 – Added CHOLMOD-based C functions. Still need methods defined in ...

bates — Sun, 18 Sep 2005 16:33:54 +0000

bates – 17 file(s) modified
Added CHOLMOD-based C functions. Still need methods defined in R and some error checking

~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
+ /trunk/Matrix/src/Csparse.c
+ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Pattern.c
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/Tsparse.c
+ /trunk/Matrix/src/Tsparse.h
~ /trunk/Matrix/src/UMFPACK/Makefile