The R Project SVN R-packages

#### Triangular Packed Matrices -- Coercion and Methods

setAs("dtpMatrix", "dtrMatrix",
      function(from) .Call(dtpMatrix_as_dtrMatrix, from))

if(FALSE) # now have faster  "ddense" -> "dge"
setAs("dtpMatrix", "dgeMatrix",
      function(from) as(as(from, "dtrMatrix"), "dgeMatrix"))

setAs("dtpMatrix", "dtTMatrix",
      ## FIXME this is NOT efficient:
      function(from) {
      x <- as(from, "TsparseMatrix")
      if(is(x, "dtTMatrix"))
          x
      else
          gt2tT(as(x, "dgTMatrix"), uplo = from@uplo, diag = from@diag)
      })

setAs("dtpMatrix", "matrix",
      function(from) as(as(from, "dtrMatrix"), "matrix"))
setAs("matrix", "dtpMatrix",
      function(from) as(as(from, "dtrMatrix"), "dtpMatrix"))


setMethod("%*%", signature(x = "dtpMatrix", y = "ddenseMatrix"),
      function(x, y) .Call(dtpMatrix_matrix_mm, x, y))
setMethod("%*%", signature(x = "dgeMatrix", y = "dtpMatrix"),
      function(x, y) .Call(dgeMatrix_dtpMatrix_mm, x, y))
## DB: I don't think this is needed any more
## %*% should always work for  <fooMatrix> %*% <fooMatrix>
## setMethod("%*%", signature(x = "dtpMatrix", y = "dtpMatrix"),
##           function(x, y)
##           ## FIXME: this is cheap; could we optimize chosing the better of
##           ## callGeneric(x, as(y, "dgeMatrix"))  and
##           ## callGeneric(as(x "dgeMatrix"), y))  depending on their 'uplo' ?
##           callGeneric(x, as(y, "dgeMatrix")))

## dtpMatrix <-> matrix : will be used by the "numeric" one
setMethod("%*%", signature(x = "dtpMatrix", y = "matrix"),
          function(x, y) .Call(dtpMatrix_matrix_mm, x, y))
setMethod("%*%", signature(x = "matrix", y = "dtpMatrix"),
          function(x, y) callGeneric(as(x, "dgeMatrix"), y))

## dtpMatrix <-> numeric : the auxiliary functions are R version specific!
##setMethod("%*%", signature(x = "dtpMatrix", y = "numeric"), .M.v)
##setMethod("%*%", signature(x = "numeric", y = "dtpMatrix"), .v.M)


setMethod("determinant", signature(x = "dtpMatrix", logarithm = "missing"),
      function(x, logarithm, ...) determinant(x, TRUE))

setMethod("determinant", signature(x = "dtpMatrix", logarithm = "logical"),
      function(x, logarithm, ...) {
          dg <- diag(x)
          if (logarithm) {
          modulus <- sum(log(abs(dg)))
          sgn <- prod(sign(dg))
          } else {
          modulus <- prod(dg)
          sgn <- sign(modulus)
          modulus <- abs(modulus)
          }
          attr(modulus, "logarithm") <- logarithm
          val <- list(modulus = modulus, sign = sgn)
          class(val) <- "det"
          val
      })

setMethod("diag", signature(x = "dtpMatrix"),
          function(x = 1, nrow, ncol = n) .Call(dtpMatrix_getDiag, x),
          valueClass = "numeric")

setMethod("norm", signature(x = "dtpMatrix", type = "character"),
      function(x, type, ...)
      .Call(dtpMatrix_norm, x, type),
      valueClass = "numeric")

setMethod("norm", signature(x = "dtpMatrix", type = "missing"),
      function(x, type, ...)
      .Call(dtpMatrix_norm, x, "O"),
      valueClass = "numeric")

setMethod("rcond", signature(x = "dtpMatrix", type = "character"),
      function(x, type, ...)
      .Call(dtpMatrix_rcond, x, type),
      valueClass = "numeric")

setMethod("rcond", signature(x = "dtpMatrix", type = "missing"),
      function(x, type, ...)
      .Call(dtpMatrix_rcond, x, "O"),
      valueClass = "numeric")

setMethod("solve", signature(a = "dtpMatrix", b="missing"),
      function(a, b, ...) .Call(dtpMatrix_solve, a),
      valueClass = "dtpMatrix")

setMethod("solve", signature(a = "dtpMatrix", b="ddenseMatrix"),
      function(a, b, ...) .Call(dtpMatrix_matrix_solve, a, b),
      valueClass = "dgeMatrix")

setMethod("solve", signature(a = "dtpMatrix", b="matrix"),
      function(a, b, ...) .Call(dtpMatrix_matrix_solve, a, b),
      valueClass = "dgeMatrix")

setMethod("t", signature(x = "dtpMatrix"),
          function(x) as(t(as(x, "dtrMatrix")), "dtpMatrix"),
          valueClass = "dtpMatrix")

setMethod("unpack", signature(x = "dtpMatrix"),
          function(x, ...) as(x, "dtrMatrix"),
          valueClass = "dtrMatrix")
###