R-packages – /trunk/Matrix/R/dsCMatrix.R

Rev 5013 – no longer use "non-standard" chol() and qr() generic

maechler — Sat, 22 Mar 2008 21:23:12 +0000

maechler – 17 file(s) modified
no longer use "non-standard" chol() and qr() generic

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/chol.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/is.na-methods.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/TODO

Rev 5010 – several cosmetics

maechler — Thu, 20 Mar 2008 23:31:22 +0000

maechler – 8 file(s) modified
several cosmetics

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Announce.txt
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/CHMfactor.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/TODO

Rev 5004 – Add Imult argument to Cholesky

bates — Wed, 19 Mar 2008 14:00:47 +0000

bates – 6 file(s) modified
Add Imult argument to Cholesky

~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 5002 – some experimental determinant()s {-> tests/factorizing.R should work!}

maechler — Tue, 18 Mar 2008 21:46:41 +0000

maechler – 1 file(s) modified
some experimental determinant()s {-> tests/factorizing.R should work!}

~ /trunk/Matrix/R/dsCMatrix.R

Rev 4994 – my fast determinant() versions

maechler — Mon, 17 Mar 2008 22:21:24 +0000

maechler – 15 file(s) modified
my fast determinant(<dsC..>) versions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/TODO

Rev 4987 – back-compatibility: as(., "dsCMatrix") with one warning per session

maechler — Fri, 14 Mar 2008 19:27:16 +0000

maechler – 5 file(s) modified
back-compatibility: as(., "dsCMatrix") with one warning per session

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/tests/simple.R

Rev 4963 – + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band ...

maechler — Sat, 23 Feb 2008 09:23:17 +0000

maechler – 55 file(s) modified
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods; Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
+ /trunk/Matrix/inst/doc/Design-issues.Rnw
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
+ /trunk/Matrix/man/forceSymmetric.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/bind2.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/symmetricMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/TMatrix_as.c
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 4953 – miscellaneous cleanup; typically indexing and coercion

maechler — Mon, 18 Feb 2008 08:27:41 +0000

maechler – 25 file(s) modified
miscellaneous cleanup; typically indexing and coercion

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/triangularMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 4734 – Remove deprecated function writeHB and its methods; switch writeMM to ...

bates — Tue, 14 Aug 2007 22:22:24 +0000

bates – 20 file(s) modified
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

~ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/DEPS.mkf
x /trunk/Matrix/src/HBMM.c
x /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/mmio.c
x /trunk/Matrix/src/mmio.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 3950 – fully-sparse solve() for dsC; indexing & comparison fixes

maechler — Fri, 03 Nov 2006 23:18:07 +0000

maechler – 24 file(s) modified
fully-sparse solve() for dsC; indexing & comparison fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/lsTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R

Rev 3878 – deprecate writeHB in favor of writeMM

bates — Sat, 07 Oct 2006 12:48:05 +0000

bates – 3 file(s) modified
deprecate writeHB in favor of writeMM

~ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R

Rev 3836 – more coercion methods (for rare matrices) => less exceptions

maechler — Fri, 29 Sep 2006 09:39:50 +0000

maechler – 17 file(s) modified
more coercion methods (for rare matrices) => less exceptions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
+ /trunk/Matrix/R/lsTMatrix.R
+ /trunk/Matrix/R/nsTMatrix.R
~ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R

Rev 3791 – check 'x' slot in l.CMatrix_validate

maechler — Mon, 18 Sep 2006 14:47:40 +0000

maechler – 16 file(s) modified
check 'x' slot in l.CMatrix_validate

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 3787 – several small fixes + more tests for "lMatrix" classes; "Compare"; ...

maechler — Sat, 16 Sep 2006 21:03:12 +0000

maechler – 18 file(s) modified
several small fixes + more tests for "lMatrix" classes; "Compare"; "chol"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
x /trunk/Matrix/man/ndiMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/other-pkgs.R

Rev 3755 – new nMatrix and subclasses; lsparse change to have x slot; ...

maechler — Mon, 11 Sep 2006 22:13:07 +0000

maechler – 64 file(s) modified
new nMatrix and subclasses; lsparse change to have x slot; many consequences

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
+ /trunk/Matrix/man/ndenseMatrix-class.Rd
+ /trunk/Matrix/man/ndiMatrix-class.Rd
+ /trunk/Matrix/man/ngeMatrix-class.Rd
+ /trunk/Matrix/man/nMatrix-class.Rd
+ /trunk/Matrix/man/nsparseMatrix-classes.Rd
+ /trunk/Matrix/man/nsyMatrix-class.Rd
+ /trunk/Matrix/man/ntrMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
+ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
+ /trunk/Matrix/R/ndenseMatrix.R
+ /trunk/Matrix/R/ngCMatrix.R
+ /trunk/Matrix/R/ngTMatrix.R
+ /trunk/Matrix/R/nsCMatrix.R
+ /trunk/Matrix/R/nsparseMatrix.R
+ /trunk/Matrix/R/ntCMatrix.R
+ /trunk/Matrix/R/ntTMatrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/ldense.c
~ /trunk/Matrix/src/ldense.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R

Rev 3517 – Promote %*% methods to ddenseMatrix class

bates — Tue, 29 Aug 2006 14:07:52 +0000

bates – 9 file(s) modified
Promote %*% methods to ddenseMatrix class

~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R

Rev 3488 – Use dup_mMatrix_as_dgeMatrix

bates — Thu, 24 Aug 2006 18:22:39 +0000

bates – 12 file(s) modified
Use dup_mMatrix_as_dgeMatrix

~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/dsTMatrix.h
~ /trunk/Matrix/src/dtTMatrix.c
~ /trunk/Matrix/src/dtTMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lsCMatrix.c
~ /trunk/Matrix/src/lsCMatrix.h

Rev 3477 – Add Cholesky generic and method for dsCMatrix. Use CHOLMOD ...

bates — Wed, 23 Aug 2006 21:29:22 +0000

bates – 4 file(s) modified
Add Cholesky generic and method for dsCMatrix. Use CHOLMOD for chol().

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h

Rev 3469 – Replace ssc_transpose call

bates — Tue, 22 Aug 2006 22:51:23 +0000

bates – 1 file(s) modified
Replace ssc_transpose call

~ /trunk/Matrix/R/dsCMatrix.R

Rev 3410 – eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

maechler — Tue, 15 Aug 2006 18:21:49 +0000

maechler – 6 file(s) modified
eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general

~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3407 – Consolidate general coercion methods in Csparse.R

bates — Mon, 14 Aug 2006 21:10:16 +0000

bates – 3 file(s) modified
Consolidate general coercion methods in Csparse.R

~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R

Rev 3401 – Generalize conversions

bates — Sat, 12 Aug 2006 17:31:39 +0000

bates – 19 file(s) modified
Generalize conversions

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Tsparse.c
~ /trunk/Matrix/src/Tsparse.h

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3172 – useDynlib(*, .registration=TRUE)

maechler — Tue, 23 May 2006 08:01:44 +0000

maechler – 33 file(s) modified
useDynlib(*, .registration=TRUE)

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/eigen.R
~ /trunk/Matrix/R/lCholCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R

Rev 3034 – coercions from dgC to triangular (dtC) and symmetric (dsC), etc

maechler — Thu, 30 Mar 2006 19:56:09 +0000

maechler – 17 file(s) modified
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/simple.R

Rev 2255 – Class cleanup; particularly ldense* ones

maechler — Mon, 23 Jan 2006 16:04:12 +0000

maechler – 24 file(s) modified
Class cleanup; particularly ldense* ones

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
x /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/TODO

Rev 2208 – make Matrix() "smart" -- with help of quite a few ...

maechler — Mon, 16 Jan 2006 20:03:48 +0000

maechler – 24 file(s) modified
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 1997 – Adding PACKAGE = to .Call lines

bates — Fri, 11 Nov 2005 14:57:22 +0000

bates – 14 file(s) modified
Adding PACKAGE = to .Call lines

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/bCrosstab.R
~ /trunk/Matrix/R/dgBCMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

maechler — Wed, 28 Sep 2005 08:56:42 +0000

maechler – 37 file(s) modified
some "Summary" methods; some "Compare" group methods; logical dense matrices

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
+ /trunk/Matrix/man/ldenseMatrix-class.Rd
+ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
+ /trunk/Matrix/man/lsyMatrix-class.Rd
+ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
+ /trunk/Matrix/R/ldenseMatrix.R
+ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R

Rev 1830 – Added CHOLMOD-based C functions. Still need methods defined in ...

bates — Sun, 18 Sep 2005 16:33:54 +0000

bates – 17 file(s) modified
Added CHOLMOD-based C functions. Still need methods defined in R and some error checking

~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
+ /trunk/Matrix/src/Csparse.c
+ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Pattern.c
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/Tsparse.c
+ /trunk/Matrix/src/Tsparse.h
~ /trunk/Matrix/src/UMFPACK/Makefile

Rev 1771 – More coercion methods

bates — Tue, 30 Aug 2005 14:36:41 +0000

bates – 2 file(s) modified
More coercion methods

~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/R/dsCMatrix.R

Rev 1706 – Add writeHB and writeMM methods and generic

bates — Mon, 08 Aug 2005 13:33:18 +0000

bates – 12 file(s) modified
Add writeHB and writeMM methods and generic

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/externalFormats.Rd
+ /trunk/Matrix/man/writeHB.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/src/HBMM.c
~ /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c

Rev 1529 – Cosmetic changes

bates — Tue, 17 May 2005 17:17:29 +0000

bates – 2 file(s) modified
Cosmetic changes

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R

Rev 1321 – Moving methods for operations with numeric to the Matrix class ...

bates — Thu, 31 Mar 2005 17:10:16 +0000

bates – 20 file(s) modified
Moving methods for operations with numeric to the Matrix class and with integer to the dMatrix class

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 1241 – comments and cosmetic, setAs(.) first

maechler — Sat, 05 Mar 2005 21:21:31 +0000

maechler – 2 file(s) modified
comments and cosmetic, setAs(.) first

~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R

Rev 982 – renaming and rearranging classes

bates — Wed, 02 Feb 2005 16:11:21 +0000

bates – 9 file(s) modified
renaming and rearranging classes

~ /trunk/Matrix/R/bCrosstab.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/Hilbert.R
~ /trunk/Matrix/R/ssclme.R

Rev 976 – Renaming and reorganizing classes

bates — Wed, 02 Feb 2005 14:14:59 +0000

bates – 22 file(s) modified
Renaming and reorganizing classes

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/bCrosstab.R
~ /trunk/Matrix/R/cscBlocked.R
x /trunk/Matrix/R/cscMatrix.R
+ /trunk/Matrix/R/dgCMatrix.R (copied from /trunk/Matrix/R/cscMatrix.R@964)
+ /trunk/Matrix/R/dgeMatrix.R (copied from /trunk/Matrix/R/geMatrix.R@964)
+ /trunk/Matrix/R/dgTMatrix.R (copied from /trunk/Matrix/R/tripletMatrix.R@964)
+ /trunk/Matrix/R/dpoMatrix.R (copied from /trunk/Matrix/R/poMatrix.R@964)
+ /trunk/Matrix/R/dsCMatrix.R (copied from /trunk/Matrix/R/sscMatrix.R@964)
+ /trunk/Matrix/R/dsyMatrix.R (copied from /trunk/Matrix/R/syMatrix.R@964)
+ /trunk/Matrix/R/dtCMatrix.R (copied from /trunk/Matrix/R/tscMatrix.R@964)
+ /trunk/Matrix/R/dtrMatrix.R (copied from /trunk/Matrix/R/trMatrix.R@964)
~ /trunk/Matrix/R/eigen.R
x /trunk/Matrix/R/geMatrix.R
~ /trunk/Matrix/R/Matrix.R
x /trunk/Matrix/R/poMatrix.R
~ /trunk/Matrix/R/sscCrosstab.R
x /trunk/Matrix/R/sscMatrix.R
x /trunk/Matrix/R/syMatrix.R
x /trunk/Matrix/R/tripletMatrix.R
x /trunk/Matrix/R/trMatrix.R
x /trunk/Matrix/R/tscMatrix.R

Rev 844 – Add a coercion for tripletMatrix to matrix

bates — Tue, 14 Dec 2004 20:00:15 +0000

bates – 3 file(s) modified
Add a coercion for tripletMatrix to matrix

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/sscMatrix.R
~ /trunk/Matrix/R/tripletMatrix.R

Rev 667 – Remove PACKAGE="Matrix" in .Call

bates — Wed, 27 Oct 2004 21:32:37 +0000

bates – 15 file(s) modified
Remove PACKAGE="Matrix" in .Call

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/cscMatrix.R
~ /trunk/Matrix/R/eigen.R
~ /trunk/Matrix/R/geMatrix.R
~ /trunk/Matrix/R/lmeRep.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pdmatrix.R
~ /trunk/Matrix/R/poMatrix.R
~ /trunk/Matrix/R/sscCrosstab.R
~ /trunk/Matrix/R/ssclme.R
~ /trunk/Matrix/R/sscMatrix.R
~ /trunk/Matrix/R/syMatrix.R
~ /trunk/Matrix/R/tripletMatrix.R
~ /trunk/Matrix/R/trMatrix.R
~ /trunk/Matrix/R/tscMatrix.R

Rev 561 – Add registration of .Call functions

bates — Mon, 04 Oct 2004 17:13:29 +0000

bates – 15 file(s) modified
Add registration of .Call functions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/sscMatrix.R
~ /trunk/Matrix/src/cscMatrix.h
~ /trunk/Matrix/src/lmeRep.c
~ /trunk/Matrix/src/lmeRep.h
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/ssclme.h
~ /trunk/Matrix/src/sscMatrix.c
~ /trunk/Matrix/src/syMatrix.c
~ /trunk/Matrix/src/syMatrix.h
~ /trunk/Matrix/src/trMatrix.c