R-packages – /trunk/Matrix/R/AllGeneric.R

Rev 5031 – make work with 2.7.0 version that do not have rcond

maechler — Sat, 29 Mar 2008 14:08:25 +0000

maechler – 5 file(s) modified
make work with 2.7.0 version that do not have rcond

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/src/UFsparse_download.sh

Rev 5028 – rcond(., norm) instead of (., type)

maechler — Fri, 28 Mar 2008 17:07:54 +0000

maechler – 21 file(s) modified
rcond(., norm) instead of (., type)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/rcond.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/simple.R

Rev 5017 – BunchKaufman(); fix o bug; Version++

maechler — Tue, 25 Mar 2008 15:00:01 +0000

maechler – 17 file(s) modified
BunchKaufman(); fix <ddi> o <numeric> bug; Version++

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/doc/Announce.txt
~ /trunk/Matrix/inst/test-tools.R
+ /trunk/Matrix/man/BunchKaufman-methods.Rd
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/MatrixFactorization.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dg_Matrix.R
~ /trunk/Matrix/tests/simple.R

Rev 5013 – no longer use "non-standard" chol() and qr() generic

maechler — Sat, 22 Mar 2008 21:23:12 +0000

maechler – 17 file(s) modified
no longer use "non-standard" chol() and qr() generic

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/chol.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/is.na-methods.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/TODO

Rev 5004 – Add Imult argument to Cholesky

bates — Wed, 19 Mar 2008 14:00:47 +0000

bates – 6 file(s) modified
Add Imult argument to Cholesky

~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 4963 – + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band ...

maechler — Sat, 23 Feb 2008 09:23:17 +0000

maechler – 55 file(s) modified
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods; Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
+ /trunk/Matrix/inst/doc/Design-issues.Rnw
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
+ /trunk/Matrix/man/forceSymmetric.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/bind2.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/symmetricMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/TMatrix_as.c
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 4952 – new symmpart(), skewpart()

maechler — Mon, 18 Feb 2008 08:24:46 +0000

maechler – 13 file(s) modified
new symmpart(), skewpart()

~ /trunk/Matrix/Done
+ /trunk/Matrix/man/symmpart.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/symmetricMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/TODO

Rev 4910 – more indexing/subassignment & testing those

maechler — Sat, 26 Jan 2008 20:59:26 +0000

maechler – 13 file(s) modified
more indexing/subassignment & testing those

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/chol.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matr-exp.R

Rev 4817 – some more dense solve() / lu()

maechler — Sat, 06 Oct 2007 22:01:45 +0000

maechler – 11 file(s) modified
some more dense solve() / lu()

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/MatrixFactorization.R
~ /trunk/Matrix/R/pMatrix.R

Rev 4778 – Check R version before defining generics for primitives

bates — Sun, 23 Sep 2007 17:32:00 +0000

bates – 1 file(s) modified
Check R version before defining generics for primitives

~ /trunk/Matrix/R/AllGeneric.R

Rev 4734 – Remove deprecated function writeHB and its methods; switch writeMM to ...

bates — Tue, 14 Aug 2007 22:22:24 +0000

bates – 20 file(s) modified
Remove deprecated function writeHB and its methods; switch writeMM to use CHOLMOD code; repair readMM

~ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/DEPS.mkf
x /trunk/Matrix/src/HBMM.c
x /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/mmio.c
x /trunk/Matrix/src/mmio.h
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 4691 – release date

maechler — Thu, 02 Aug 2007 07:22:44 +0000

maechler – 3 file(s) modified
release date

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/R/AllGeneric.R

Rev 4668 – (mostly) patches from Brian re potential changes in R-devel

maechler — Wed, 25 Jul 2007 14:17:24 +0000

maechler – 7 file(s) modified
(mostly) patches from Brian re potential changes in R-devel

~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/Class+Meth.R

Rev 4518 – Math/Math2: setGeneric adaption for todays` R-devel

maechler — Fri, 29 Jun 2007 16:43:47 +0000

maechler – 6 file(s) modified
Math/Math2: setGeneric adaption for todays` R-devel

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/spMatrix.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4354 – part of sparseVector additions; in order to avoid merge conflicts

maechler — Wed, 16 May 2007 21:24:41 +0000

maechler – 21 file(s) modified
part of sparseVector additions; in order to avoid merge conflicts

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
+ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4199 – + diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes ...

maechler — Sat, 24 Mar 2007 14:54:00 +0000

maechler – 24 file(s) modified
+ diff(.), + "dim<-"; cBind/rBind + cbind/rbind; indexing fixes - current state

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 3678 – Merging changes from Matrix-nolmer branch

bates — Mon, 04 Sep 2006 18:41:34 +0000

bates – 37 file(s) modified
Merging changes from Matrix-nolmer branch

~ /trunk/Matrix/ChangeLog
x /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/BIC.Rd
x /trunk/Matrix/man/fixef.Rd
x /trunk/Matrix/man/hatTrace.Rd
x /trunk/Matrix/man/lmer-class.Rd
x /trunk/Matrix/man/lmer.Rd
x /trunk/Matrix/man/mcmcsamp.Rd
x /trunk/Matrix/man/pedigree-class.Rd
x /trunk/Matrix/man/pedigree.Rd
x /trunk/Matrix/man/ranef.Rd
x /trunk/Matrix/man/sleepstudy.Rd
x /trunk/Matrix/man/VarCorr-class.Rd
x /trunk/Matrix/man/VarCorr.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/lmer.R
x /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/dtCMatrix.h
~ /trunk/Matrix/src/init.c
x /trunk/Matrix/src/lmer.c
x /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/ltCMatrix.c
~ /trunk/Matrix/src/ltCMatrix.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
x /trunk/Matrix/src/pedigree.c
x /trunk/Matrix/src/pedigree.h
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/src/Syms.h
x /trunk/Matrix/tests/lmer.R

Rev 3477 – Add Cholesky generic and method for dsCMatrix. Use CHOLMOD ...

bates — Wed, 23 Aug 2006 21:29:22 +0000

bates – 4 file(s) modified
Add Cholesky generic and method for dsCMatrix. Use CHOLMOD for chol().

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h

Rev 3427 – export zapsmall(); define as.numeric and as.logical methods (not yet finished); ...

maechler — Fri, 18 Aug 2006 13:53:33 +0000

maechler – 8 file(s) modified
export zapsmall(); define as.numeric and as.logical methods (not yet finished); fix printing "U" diagonal triangular sparse

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 3348 – cleanup

maechler — Mon, 31 Jul 2006 08:32:50 +0000

maechler – 1 file(s) modified
cleanup

~ /trunk/Matrix/R/AllGeneric.R

Rev 3220 – No longer create a generic for qqmath

bates — Thu, 08 Jun 2006 16:04:50 +0000

bates – 1 file(s) modified
No longer create a generic for qqmath

~ /trunk/Matrix/R/AllGeneric.R

Rev 3180 – Add isNested and for an identity permutation for nested grouping ...

bates — Sat, 27 May 2006 19:51:01 +0000

bates – 7 file(s) modified
Add isNested and for an identity permutation for nested grouping factors

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 3166 – Add a generic for qqmath (maybe not a good idea)

bates — Mon, 22 May 2006 18:57:35 +0000

bates – 1 file(s) modified
Add a generic for qqmath (maybe not a good idea)

~ /trunk/Matrix/R/AllGeneric.R

Rev 3145 – lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

bates — Wed, 17 May 2006 17:42:09 +0000

bates – 6 file(s) modified
lowerTriMatrix to tril, upperTriMatrix to triu, added band extractor

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R

Rev 3134 – Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

bates — Mon, 15 May 2006 22:36:59 +0000

bates – 6 file(s) modified
Generics lowerTriMatrix and upperTriMatrix and C function Csparse_band

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c

Rev 3080 – Remove postVar generic and methods

bates — Wed, 19 Apr 2006 14:16:59 +0000

bates – 3 file(s) modified
Remove postVar generic and methods

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R

Rev 3054 – Added qqmath method for ranef.lmer and postVar for ranef methods

bates — Sun, 09 Apr 2006 00:02:26 +0000

bates – 9 file(s) modified
Added qqmath method for ranef.lmer and postVar for ranef methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/TODO

Rev 3034 – coercions from dgC to triangular (dtC) and symmetric (dsC), etc

maechler — Thu, 30 Mar 2006 19:56:09 +0000

maechler – 17 file(s) modified
coercions from dgC to triangular (dtC) and symmetric (dsC), etc

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/simple.R

Rev 2348 – lmer(): dropped non-sensical 'x' and 'y' arguments

maechler — Tue, 07 Mar 2006 11:06:46 +0000

maechler – 2 file(s) modified
lmer(): dropped non-sensical 'x' and 'y' arguments

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/src/lmer.c

Rev 2212 – Munging the data frame

bates — Tue, 17 Jan 2006 23:41:36 +0000

bates – 6 file(s) modified
Munging the data frame

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 2120 – isSymmetric() generic must match isSymmetric in R-devel

maechler — Mon, 02 Jan 2006 23:02:07 +0000

maechler – 4 file(s) modified
isSymmetric() generic must match isSymmetric in R-devel

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 2068 – Brian's version of 2-arg tcrossprod()

maechler — Mon, 12 Dec 2005 13:58:10 +0000

maechler – 1 file(s) modified
Brian's version of 2-arg tcrossprod()

~ /trunk/Matrix/R/AllGeneric.R

Rev 2059 – make tcrossprod() use 2 arguments (x, y=NULL)

maechler — Fri, 09 Dec 2005 20:55:39 +0000

maechler – 16 file(s) modified
make tcrossprod() use 2 arguments (x, y=NULL)

~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/dtpMatrix.R
~ /trunk/Matrix/TODO

Rev 1906 – isSymmetric() & simulate() updates; sparse subsetting

maechler — Fri, 07 Oct 2005 20:15:08 +0000

maechler – 9 file(s) modified
isSymmetric() & simulate() updates; sparse subsetting

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/zzz.R

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

maechler — Wed, 28 Sep 2005 08:56:42 +0000

maechler – 37 file(s) modified
some "Summary" methods; some "Compare" group methods; logical dense matrices

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
+ /trunk/Matrix/man/ldenseMatrix-class.Rd
+ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
+ /trunk/Matrix/man/lsyMatrix-class.Rd
+ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
+ /trunk/Matrix/R/ldenseMatrix.R
+ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R

Rev 1844 – move setGeneric to AllGeneric

maechler — Tue, 20 Sep 2005 10:15:26 +0000

maechler – 2 file(s) modified
move setGeneric to AllGeneric

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dgeMatrix.R

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

maechler — Mon, 19 Sep 2005 19:01:31 +0000

maechler – 44 file(s) modified
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
+ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
+ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dgTMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R

Rev 1792 – Add "start" argument to lmer

bates — Tue, 06 Sep 2005 01:26:11 +0000

bates – 7 file(s) modified
Add "start" argument to lmer

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1779 – New simulate method for lmer objects

bates — Thu, 01 Sep 2005 13:46:21 +0000

bates – 7 file(s) modified
New simulate method for lmer objects

~ /trunk/Matrix/man/simulate.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1770 – Added simulate generic and method

bates — Tue, 30 Aug 2005 14:35:05 +0000

bates – 6 file(s) modified
Added simulate generic and method

+ /trunk/Matrix/man/simulate.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h