R-packages – /trunk/Matrix/Done

Rev 5013 – no longer use "non-standard" chol() and qr() generic

maechler — Sat, 22 Mar 2008 21:23:12 +0000

maechler – 17 file(s) modified
no longer use "non-standard" chol() and qr() generic

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/chol.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/is.na-methods.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/nsCMatrix.R
~ /trunk/Matrix/TODO

Rev 5010 – several cosmetics

maechler — Thu, 20 Mar 2008 23:31:22 +0000

maechler – 8 file(s) modified
several cosmetics

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Announce.txt
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/R/CHMfactor.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/TODO

Rev 4979 – diagN2U() for preserving (unit-)triangularity in sparse (triang.)matrix multiplication

maechler — Fri, 07 Mar 2008 07:58:26 +0000

maechler – 13 file(s) modified
diagN2U() for preserving (unit-)triangularity in sparse (triang.)matrix multiplication

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 4963 – + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band ...

maechler — Sat, 23 Feb 2008 09:23:17 +0000

maechler – 55 file(s) modified
+ forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band allowing simplified methods; Matrix() and many man/*Rd : replace many as(*, <specific>) by as(*, <virtual superclass>)

~ /trunk/Matrix/.Rbuildignore
~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
+ /trunk/Matrix/inst/doc/Design-issues.Rnw
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CAex.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
+ /trunk/Matrix/man/forceSymmetric.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/bind2.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/symmetricMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/TMatrix_as.c
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 4952 – new symmpart(), skewpart()

maechler — Mon, 18 Feb 2008 08:24:46 +0000

maechler – 13 file(s) modified
new symmpart(), skewpart()

~ /trunk/Matrix/Done
+ /trunk/Matrix/man/symmpart.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/symmetricMatrix.R
~ /trunk/Matrix/src/dense.c
~ /trunk/Matrix/src/dense.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/TODO

Rev 4904 – + "Schur" class and many more Schur methods

maechler — Wed, 23 Jan 2008 09:36:04 +0000

maechler – 14 file(s) modified
+ "Schur" class and many more Schur methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/Schur.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/eigen.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 4871 – indexing M[i], for vector i; and tests for those, see ...

maechler — Sun, 09 Dec 2007 00:35:14 +0000

maechler – 16 file(s) modified
indexing M[i], for *vector* i; and tests for those, see ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 4733 – new nearPD() {from Jens` nearcor()}; some TODO cleanup

maechler — Tue, 14 Aug 2007 15:09:10 +0000

maechler – 10 file(s) modified
new nearPD() {from Jens` nearcor()}; some TODO cleanup

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
+ /trunk/Matrix/man/nearPD.Rd
~ /trunk/Matrix/man/rcond.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/nearPD.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4639 – norm() for sparse; systematic checking of norm() and all "Summary" ...

maechler — Wed, 18 Jul 2007 14:46:20 +0000

maechler – 42 file(s) modified
norm() for sparse; systematic checking of norm() and all "Summary" methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/all-methods.Rd
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/ndenseMatrix-class.Rd
~ /trunk/Matrix/man/nMatrix-class.Rd
~ /trunk/Matrix/man/norm.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/rcond.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/ndenseMatrix.R
~ /trunk/Matrix/R/ngTMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/TODO

Rev 4545 – not dropping dimnames (notably of sparse matrices)

maechler — Wed, 04 Jul 2007 18:07:07 +0000

maechler – 14 file(s) modified
not dropping dimnames (notably of sparse matrices)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/ngCMatrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/tests/Class+Meth.R

Rev 4501 – xsparseVector etc (smarter coercions)

maechler — Sat, 23 Jun 2007 18:08:48 +0000

maechler – 11 file(s) modified
xsparseVector etc (smarter coercions)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Intro2Matrix.Rnw
~ /trunk/Matrix/man/colSums.Rd
~ /trunk/Matrix/man/sparseVector-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/colSums.R
~ /trunk/Matrix/R/sparseVector.R
~ /trunk/Matrix/TODO

Rev 4468 – + print(, extra args)

maechler — Sat, 16 Jun 2007 18:31:51 +0000

maechler – 5 file(s) modified
+ print(<sparse>, extra args)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/sparseMatrix.R

Rev 4422 – give message on suppressed column names

maechler — Tue, 05 Jun 2007 16:28:55 +0000

maechler – 5 file(s) modified
give message on suppressed column names

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/TODO

Rev 4109 – drop(); tweaks to Ops & indexing; Rsparse coercions for less ...

maechler — Tue, 30 Jan 2007 17:41:02 +0000

maechler – 28 file(s) modified
drop(); tweaks to Ops & indexing; Rsparse coercions for less exceptions in tests/Class+Meth.R

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/nsparseMatrix-classes.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/nsparseMatrix.R
~ /trunk/Matrix/R/Ops.R
~ /trunk/Matrix/R/Rsparse.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3959 – host of changes; mostly indexing(sub-set & -assign) for symmetric and ...

maechler — Mon, 06 Nov 2006 20:54:26 +0000

maechler – 21 file(s) modified
host of changes; mostly indexing(sub-set & -assign) for symmetric and [ cbind(i,j) ]

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 3942 – extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

maechler — Wed, 01 Nov 2006 17:50:15 +0000

maechler – 13 file(s) modified
extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/TODO

Rev 3933 – another set of fixes/improvements; the last prompted by Harri Kiiveri

maechler — Mon, 30 Oct 2006 17:16:27 +0000

maechler – 22 file(s) modified
another set of fixes/improvements; the last prompted by Harri Kiiveri

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/RsparseMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3931 – miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

maechler — Fri, 27 Oct 2006 16:58:15 +0000

maechler – 38 file(s) modified
miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/ddiMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/diagonalMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/HBMM.R
~ /trunk/Matrix/R/Hilbert.R
~ /trunk/Matrix/R/lMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 3871 – M[i,j] <-

maechler — Thu, 05 Oct 2006 16:30:46 +0000

maechler – 5 file(s) modified
M[i,j] <- <Matrix>

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/Diagonal.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/R/Matrix.R

Rev 3828 – "Compare" for "dMatrix"; plus a few small ones

maechler — Thu, 28 Sep 2006 15:31:17 +0000

maechler – 11 file(s) modified
"Compare" for "dMatrix"; plus a few small ones

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3795 – Update. Move lmer-related TODOs to lme4

bates — Mon, 18 Sep 2006 21:02:50 +0000

bates – 2 file(s) modified
Update. Move lmer-related TODOs to lme4

~ /trunk/Matrix/Done
~ /trunk/Matrix/TODO

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3338 – miscellaneous mostly related to sparse indexing

maechler — Fri, 21 Jul 2006 06:47:06 +0000

maechler – 17 file(s) modified
miscellaneous mostly related to sparse indexing

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/TODO

Rev 3218 – implemented all 4 of {rowSums(), ... colMeans()}

maechler — Thu, 08 Jun 2006 09:30:21 +0000

maechler – 19 file(s) modified
implemented all 4 of {rowSums(), ... colMeans()}

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/TODO

Rev 2362 – put "mm" and "y" datasets into list "KNex" and change ...

maechler — Wed, 15 Mar 2006 17:43:34 +0000

maechler – 20 file(s) modified
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
ready for release of 0.995-6

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/KNex.rda
x /trunk/Matrix/data/mm.rda
x /trunk/Matrix/data/y.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/externalFormats.Rd
+ /trunk/Matrix/man/KNex.Rd (copied from /trunk/Matrix/man/mm.Rd@2360)
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
x /trunk/Matrix/man/mm.Rd
x /trunk/Matrix/man/y.Rd
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/dg_Matrix.R
+ /trunk/Matrix/tests/dpoMatrix.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/mm-redo.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 2357 – sparse: "[<-" and better arithmetic; other tweaks

maechler — Mon, 13 Mar 2006 14:07:58 +0000

maechler – 26 file(s) modified
sparse: "[<-" and better arithmetic; other tweaks

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 2355 – Update documentation to new lmer class structure

bates — Mon, 13 Mar 2006 13:05:33 +0000

bates – 4 file(s) modified
Update documentation to new lmer class structure

~ /trunk/Matrix/Done
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/TODO

Rev 2123 – "diagonalMatrix" class and subclasses with a few methods; very basic ...

maechler — Tue, 03 Jan 2006 16:42:31 +0000

maechler – 15 file(s) modified
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
+ /trunk/Matrix/man/ddiMatrix-class.Rd
+ /trunk/Matrix/man/Diagonal.Rd
+ /trunk/Matrix/man/diagonalMatrix-class.Rd
+ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
+ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
+ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/TODO

Rev 1909 – more examples; update

maechler — Fri, 07 Oct 2005 20:18:29 +0000

maechler – 7 file(s) modified
more examples; update

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/TODO

Rev 1865 – move "factors" slot to "Matrix"

maechler — Wed, 28 Sep 2005 19:31:36 +0000

maechler – 8 file(s) modified
move "factors" slot to "Matrix"

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/TODO

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

maechler — Wed, 28 Sep 2005 08:56:42 +0000

maechler – 37 file(s) modified
some "Summary" methods; some "Compare" group methods; logical dense matrices

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
+ /trunk/Matrix/man/ldenseMatrix-class.Rd
+ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
+ /trunk/Matrix/man/lsyMatrix-class.Rd
+ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
+ /trunk/Matrix/R/ldenseMatrix.R
+ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R

Rev 1843 – update TODOs

maechler — Tue, 20 Sep 2005 10:14:57 +0000

maechler – 2 file(s) modified
update TODOs

~ /trunk/Matrix/Done
~ /trunk/Matrix/TODO

Rev 1772 –

bates — Tue, 30 Aug 2005 14:37:09 +0000

bates – 2 file(s) modified

~ /trunk/Matrix/Done
~ /trunk/Matrix/TODO

Rev 1759 – better explain diag="U" for dtpMatrix

maechler — Fri, 26 Aug 2005 17:23:49 +0000

maechler – 3 file(s) modified
better explain diag="U" for dtpMatrix

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/TODO

Rev 1313 – export csc_tcrossprod - and add examples & test for tcrossprod()

maechler — Sat, 26 Mar 2005 11:16:05 +0000

maechler – 6 file(s) modified
export csc_tcrossprod - and add examples & test for tcrossprod()

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dgCMatrix.R
~ /trunk/Matrix/TODO

Rev 1126 – Release 0.95-1

bates — Fri, 18 Feb 2005 19:24:43 +0000

bates – 13 file(s) modified
Release 0.95-1

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/Doxyfile
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/corFactor.Rd
x /trunk/Matrix/man/corMatrix.Rd
~ /trunk/Matrix/man/expm.Rd
x /trunk/Matrix/man/matrixGets.Rd
x /trunk/Matrix/man/pdFactor.Rd
x /trunk/Matrix/man/pdMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/tests/matr-exp.R

Rev 1065 – more "Done"

maechler — Thu, 10 Feb 2005 14:32:59 +0000

maechler – 4 file(s) modified
more "Done"

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/bCrosstab.Rd
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/TODO

Rev 1060 – add @Dimnames (-> new "mm")

maechler — Thu, 10 Feb 2005 13:50:27 +0000

maechler – 18 file(s) modified
add @Dimnames (-> new "mm")

~ /trunk/Matrix/data/mm.rda
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/dgBCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/tests/dpoMatrix.Rout.save
~ /trunk/Matrix/tests/matr-exp.R
~ /trunk/Matrix/tests/mm-redo.R
~ /trunk/Matrix/tests/validObj.R
~ /trunk/Matrix/TODO

Rev 1054 – rearranging utility functions in the C code

bates — Thu, 10 Feb 2005 08:15:12 +0000

bates – 11 file(s) modified
rearranging utility functions in the C code

~ /trunk/Matrix/Done
~ /trunk/Matrix/R/dgBCMatrix.R
~ /trunk/Matrix/src/bCrosstab.c
~ /trunk/Matrix/src/dgBCMatrix.c
~ /trunk/Matrix/src/dgBCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/TODO

Rev 1034 – Fixes from the TODO list

bates — Mon, 07 Feb 2005 10:58:27 +0000

bates – 2 file(s) modified
Fixes from the TODO list

~ /trunk/Matrix/Done
~ /trunk/Matrix/TODO

R-packages – /trunk/Matrix/Done

Rev 5013 – no longer use "non-standard" chol() and qr() generic

Rev 5010 – several cosmetics

Rev 4979 – diagN2U() for preserving (unit-)triangularity in sparse (triang.)matrix multiplication

Rev 4963 – + forceSymmetric(); generalize ddense_to_symmetric to dense_to_s.. and ddense_band to dense_band ...

Rev 4952 – new symmpart(), skewpart()

Rev 4904 – + "Schur" class and many more Schur methods

Rev 4871 – indexing M[i], for *vector* i; and tests for those, see ...

Rev 4733 – new nearPD() {from Jens` nearcor()}; some TODO cleanup

Rev 4639 – norm() for sparse; systematic checking of norm() and all "Summary" ...

Rev 4545 – not dropping dimnames (notably of sparse matrices)

Rev 4501 – xsparseVector etc (smarter coercions)

Rev 4468 – + print(, extra args)

Rev 4422 – give message on suppressed column names

Rev 4109 – drop(); tweaks to Ops & indexing; Rsparse coercions for less ...

Rev 3959 – host of changes; mostly indexing(sub-set & -assign) for symmetric and ...

Rev 3942 – extend Csparse_Csparse_crossprod for tcrossprod (need test!); isSymmetric improved; misc.

Rev 3933 – another set of fixes/improvements; the last prompted by Harri Kiiveri

Rev 3931 – miscellaneous "fixes" mostly in ChangeLog and/or related to diagonalMatrix

Rev 3871 – M[i,j] <-

Rev 3828 – "Compare" for "dMatrix"; plus a few small ones

Rev 3795 – Update. Move lmer-related TODOs to lme4

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

Rev 3338 – miscellaneous mostly related to sparse indexing

Rev 3218 – implemented all 4 of {rowSums(), ... colMeans()}

Rev 2362 – put "mm" and "y" datasets into list "KNex" and change ...

Rev 2357 – sparse: "[<-" and better arithmetic; other tweaks

Rev 2355 – Update documentation to new lmer class structure

Rev 2123 – "diagonalMatrix" class and subclasses with a few methods; very basic ...

Rev 1909 – more examples; update

Rev 1865 – move "factors" slot to "Matrix"

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

Rev 1843 – update TODOs

Rev 1772 –

Rev 1759 – better explain diag="U" for dtpMatrix

Rev 1313 – export csc_tcrossprod - and add examples & test for tcrossprod()

Rev 1126 – Release 0.95-1

Rev 1065 – more "Done"

Rev 1060 – add @Dimnames (-> new "mm")

Rev 1054 – rearranging utility functions in the C code

Rev 1034 – Fixes from the TODO list

Rev 4871 – indexing M[i], for vector i; and tests for those, see ...