R-packages – /branches/cluster-2.1/src/cluster.h

Rev 8500 – create cluster-2.1 branch

maechler — Tue, 11 Mar 2025 21:41:39 +0000

maechler – 1 file(s) modified
create cluster-2.1 branch

+ /branches/cluster-2.1 (copied from /trunk/cluster@8468)

Rev 8465 – tweaks from mv Fortran -> C: dysta() returns; dysta, dysta3 ...

maechler — Fri, 06 Dec 2024 10:49:50 +0000

maechler – 11 file(s) modified
tweaks from mv Fortran -> C: dysta() *returns*; dysta, dysta3 no longer exported

~ /trunk/cluster/.Rbuildignore
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/dysta.c
~ /trunk/cluster/src/fanny.c
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/src/twins.c
~ /trunk/cluster/tests/dysta-ex.R

Rev 8457 – translate last remaining Fortran dysta.f and daisy.f to *.c adapting ...

maechler — Fri, 04 Oct 2024 15:42:51 +0000

maechler – 14 file(s) modified
translate last remaining Fortran dysta.f and daisy.f to *.c adapting calls,headers

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
~ /trunk/cluster/R/agnes.q
~ /trunk/cluster/R/daisy.q
~ /trunk/cluster/R/mona.q
~ /trunk/cluster/src/cluster.h
+ /trunk/cluster/src/daisy.c
x /trunk/cluster/src/daisy.f
+ /trunk/cluster/src/dysta.c
x /trunk/cluster/src/dysta.f
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/mona.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/src/twins.c

Rev 8265 – clara(): add `metric = "gower"` {strange probl. w/ --as-cran ??}

maechler — Sat, 12 Aug 2023 22:01:17 +0000

maechler – 9 file(s) modified
clara(): add `metric = "gower"` {strange probl. w/ --as-cran ??}

~ /trunk/cluster/.Rbuildignore
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
~ /trunk/cluster/man/clara.Rd
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/R/daisy.q
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
+ /trunk/cluster/tests/clara-gower.R

Rev 7673 – fix LTO-revealed issue in F77_NAME(cldaisy) decl

maechler — Fri, 07 Jun 2019 16:53:58 +0000

maechler – 4 file(s) modified
fix LTO-revealed issue in F77_NAME(cldaisy) decl

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/daisy.f

Rev 7663 – version 2.0.9; use void F77_NAME; update

maechler — Wed, 01 May 2019 11:06:37 +0000

maechler – 3 file(s) modified
version 2.0.9; use *void* F77_NAME; update

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/tests/mona.Rout.save

Rev 7509 – (from a year ago:) clara() with Jaccard metric, pam() ...

maechler — Thu, 29 Mar 2018 14:44:04 +0000

maechler – 20 file(s) modified
(from a year ago:) clara() with Jaccard metric, pam() to follow, not quiet yet; + small things

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
+ /trunk/cluster/inst/test-tools.R
~ /trunk/cluster/man/clara.Rd
~ /trunk/cluster/man/clusGap.Rd
~ /trunk/cluster/man/mona.Rd
~ /trunk/cluster/man/pam.Rd
~ /trunk/cluster/man/xclara.Rd
~ /trunk/cluster/NAMESPACE
~ /trunk/cluster/R/0aaa.R
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/R/clusGapGen.R
~ /trunk/cluster/R/daisy.q
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/daisy.f
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/TODO-MM

Rev 7331 – switch (again!) mona to use C version; catch p=1 as ...

maechler — Fri, 10 Mar 2017 08:04:00 +0000

maechler – 12 file(s) modified
switch (again!) mona to use C version; catch p=1 as error; cosmetic

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
~ /trunk/cluster/man/pam.Rd
~ /trunk/cluster/R/mona.q
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/mona.c
x /trunk/cluster/src/mona.f
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/tests/mona.R
~ /trunk/cluster/tests/mona.Rout.save

Rev 7184 – finalized the `correct.d` -- bug fix to clara(); ready for ...

maechler — Fri, 15 Apr 2016 14:03:03 +0000

maechler – 11 file(s) modified
finalized the `correct.d` -- bug fix to clara(); ready for release

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/inst/NEWS.Rd
~ /trunk/cluster/man/clara.Rd
~ /trunk/cluster/man/pam.Rd
~ /trunk/cluster/NAMESPACE
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/tests/clara-2.Rout.save
~ /trunk/cluster/tests/clara-NAs.Rout.save

Rev 6872 – basically revert r6871: do pass `n` for now

maechler — Mon, 26 Jan 2015 18:21:15 +0000

maechler – 4 file(s) modified
basically revert r6871: do pass `n` for now

~ /trunk/cluster/R/pam.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c

Rev 6871 – cl_Pam() no need to pass `n`; can get it from ...

maechler — Mon, 26 Jan 2015 17:46:41 +0000

maechler – 3 file(s) modified
cl_Pam() no need to pass `n`; can get it from the object

~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c

Rev 6869 – pam() now uses .Call() instead of .C() -- (kept old ...

maechler — Mon, 26 Jan 2015 13:30:42 +0000

maechler – 16 file(s) modified
pam() now uses .Call() instead of .C() -- (kept old code for now)

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/man/pam.object.Rd
~ /trunk/cluster/R/agnes.q
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/R/daisy.q
~ /trunk/cluster/R/diana.q
~ /trunk/cluster/R/fanny.q
~ /trunk/cluster/R/internal.R
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/dysta.f
~ /trunk/cluster/src/fanny.c
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/tests/pam.R
~ /trunk/cluster/tests/pam.Rout.save

Rev 6801 – agnes() and diana() finally get, respectively work with a "trace.lev" ...

maechler — Thu, 04 Sep 2014 15:47:41 +0000

maechler – 9 file(s) modified
agnes() and diana() finally get, respectively work with a "trace.lev" option.
Further: agnes(*, method="flexible", par.method = c(a1, a2, b, c)), i.e.,
length(alpha) == 4, finally works *correctly* {confirmed with single,complete tests}

~ /trunk/cluster/man/agnes.Rd
~ /trunk/cluster/man/diana.Rd
~ /trunk/cluster/R/agnes.q
~ /trunk/cluster/R/diana.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/twins.c
~ /trunk/cluster/tests/agnes-ex.R
~ /trunk/cluster/tests/agnes-ex.Rout.save

Rev 6057 – pam(*, pamonce=.) incorporate the faster SWAP algorithms provided by Matthias ...

maechler — Wed, 01 Feb 2012 08:42:19 +0000

maechler – 10 file(s) modified
pam(*, pamonce=.) incorporate the faster SWAP algorithms provided by Matthias Studer

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/DONE-MM
~ /trunk/cluster/man/pam.Rd
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/tests/pam.R
~ /trunk/cluster/tests/pam.Rout.save
~ /trunk/cluster/TODO-MM

Rev 5980 – meet() is no longer needed

maechler — Thu, 22 Dec 2011 08:17:22 +0000

maechler – 3 file(s) modified
meet() is no longer needed

~ /trunk/cluster/src/cluster.h
x /trunk/cluster/src/meet.f
~ /trunk/cluster/src/twins.c

Rev 5978 – more twins.c code cleanup; export coefHier()

maechler — Wed, 21 Dec 2011 12:01:53 +0000

maechler – 7 file(s) modified
more twins.c code cleanup; export coefHier()

~ /trunk/cluster/ChangeLog
~ /trunk/cluster/man/coef.hclust.Rd
~ /trunk/cluster/NAMESPACE
~ /trunk/cluster/R/coef.R
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/twins.c

Rev 5976 – twins.f -> twins.c -- using C instead of Fortran

maechler — Wed, 21 Dec 2011 09:36:17 +0000

maechler – 6 file(s) modified
twins.f -> twins.c -- using C instead of Fortran

~ /trunk/cluster/R/agnes.q
~ /trunk/cluster/R/diana.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
+ /trunk/cluster/src/twins.c
x /trunk/cluster/src/twins.f

Rev 5758 – make clara() more pam()-like on C level --- notably allow ...

maechler — Sat, 16 Apr 2011 18:09:23 +0000

maechler – 11 file(s) modified
make clara() more pam()-like on C level --- notably allow "pamLike=TRUE" argument

~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/tests/clara-2.R
~ /trunk/cluster/tests/clara.Rout.save
~ /trunk/cluster/tests/diana-ex.Rout.save
~ /trunk/cluster/tests/ellipsoid-ex.Rout.save
~ /trunk/cluster/tests/pam.Rout.save

Rev 5634 – omit the "_" in cl_() for fortran for now; Enhances

maechler — Thu, 21 Oct 2010 15:13:49 +0000

maechler – 7 file(s) modified
omit the "_" in cl_<name>() for fortran for now; Enhances

~ /trunk/cluster/ChangeLog
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/daisy.f
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/mona.f
~ /trunk/cluster/tests/clusplot-out.Rout.save

Rev 5592 – rename some compiled routines, in order to allow registration of ...

maechler — Sat, 19 Jun 2010 16:37:03 +0000

maechler – 19 file(s) modified
rename some compiled routines, in order to allow registration of those names

~ /trunk/cluster/ChangeLog
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/NAMESPACE
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/R/fanny.q
~ /trunk/cluster/R/mona.q
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/R/zzz.R
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/fanny.c
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/mona.f
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/src/spannel.c
~ /trunk/cluster/tests/clara-NAs.Rout.save
~ /trunk/cluster/tests/clara.Rout.save
~ /trunk/cluster/tests/fanny-ex.Rout.save
~ /trunk/cluster/tests/sweep-ex.R

Rev 4967 – misc. updates since September; notably pam(, do.swap)

maechler — Fri, 29 Feb 2008 11:13:02 +0000

maechler – 20 file(s) modified
misc. updates since September; notably pam(<large>, do.swap)

~ /trunk/cluster/ChangeLog
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/man/clara.Rd
~ /trunk/cluster/man/pam.Rd
~ /trunk/cluster/R/clara.q
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/ind_2.h
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/tests/clara-2.Rout.save
~ /trunk/cluster/tests/clara-ex.Rout.save
~ /trunk/cluster/tests/clara-NAs.Rout.save
~ /trunk/cluster/tests/clusplot-out.R
~ /trunk/cluster/tests/clusplot-out.Rout.save
~ /trunk/cluster/tests/daisy-ex.Rout.save
~ /trunk/cluster/tests/ellipsoid-ex.Rout.save
~ /trunk/cluster/tests/fanny-ex.Rout.save
~ /trunk/cluster/tests/mona.Rout.save
~ /trunk/cluster/tests/pam.R
~ /trunk/cluster/tests/pam.Rout.save

Rev 3721 – register dysta3 as C, not Fortran; ready to release 1.11.2

maechler — Thu, 07 Sep 2006 16:01:24 +0000

maechler – 8 file(s) modified
register dysta3 as C, not Fortran; ready to release 1.11.2

~ /trunk/cluster/.Rbuildignore
~ /trunk/cluster/ChangeLog
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/man/clara.object.Rd
~ /trunk/cluster/man/fanny.object.Rd
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/fanny.c
~ /trunk/cluster/src/init.c

Rev 3143 – fanny; a bit more fygur() cleanup

maechler — Wed, 17 May 2006 13:51:20 +0000

maechler – 3 file(s) modified
fanny; a bit more fygur() cleanup

~ /trunk/cluster/ChangeLog
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/fanny.c

Rev 3083 – many more fanny extensions

maechler — Wed, 19 Apr 2006 14:36:37 +0000

maechler – 14 file(s) modified
many more fanny extensions

~ /trunk/cluster/ChangeLog
~ /trunk/cluster/DESCRIPTION
~ /trunk/cluster/man/fanny.object.Rd
~ /trunk/cluster/man/fanny.Rd
~ /trunk/cluster/R/fanny.q
~ /trunk/cluster/R/pam.q
~ /trunk/cluster/R/plotpart.q
~ /trunk/cluster/src/clara.c
~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/dysta.f
~ /trunk/cluster/src/fanny.c
~ /trunk/cluster/src/init.c
~ /trunk/cluster/src/pam.c
~ /trunk/cluster/tests/fanny-ex.R

Rev 3053 – translated fanny.f to fanny.c (and properly register)

maechler — Sat, 08 Apr 2006 23:13:51 +0000

maechler – 6 file(s) modified
translated fanny.f to fanny.c (and properly register)

~ /trunk/cluster/man/fanny.Rd
~ /trunk/cluster/R/fanny.q
~ /trunk/cluster/src/cluster.h
+ /trunk/cluster/src/fanny.c (copied from /trunk/cluster/src/fanny.f@3052)
x /trunk/cluster/src/fanny.f
~ /trunk/cluster/src/init.c

Rev 3012 – new sildist from Romain Francois

maechler — Mon, 27 Feb 2006 08:54:19 +0000

maechler – 3 file(s) modified
new sildist from Romain Francois

~ /trunk/cluster/src/cluster.h
~ /trunk/cluster/src/init.c
+ /trunk/cluster/src/sildist.c

Rev 2968 – version of 2006.01.26.16.48.02 (now is 26 Jan 2006).

maechler — Thu, 26 Jan 2006 16:48:02 +0000

maechler – 1 file(s) modified
version of 2006.01.26.16.48.02 (now is 26 Jan 2006).