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R version 2.12.0 Patched (2010-10-19 r53372)
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ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

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> library(cluster)
> 
> ### clusplot() & pam() RESULT checking ...
> 
> ## plotting votes.diss(dissimilarity) in a bivariate plot and
> ## partitioning into 2 clusters
> data(votes.repub)
> votes.diss <- daisy(votes.repub)
> for(k in 2:4) {
+     votes.clus <- pam(votes.diss, k, diss = TRUE)$clustering
+     print(clusplot(votes.diss, votes.clus, diss = TRUE, shade = TRUE))
+ }
$Distances
         [,1]     [,2]
[1,]   0.0000 154.8601
[2,] 154.8601   0.0000

$Shading
[1] 22.12103 20.87897

$Distances
         [,1] [,2]     [,3]
[1,]   0.0000   NA 140.8008
[2,]       NA    0       NA
[3,] 140.8008   NA   0.0000

$Shading
[1] 25.602967  5.292663 15.104370

$Distances
         [,1] [,2]     [,3]     [,4]
[1,]   0.0000   NA 117.2287 280.7259
[2,]       NA    0       NA       NA
[3,] 117.2287   NA   0.0000       NA
[4,] 280.7259   NA       NA   0.0000

$Shading
[1] 15.431339  3.980743 10.145454 19.442464

> 
> ## plotting iris (dataframe) in a 2-dimensional plot and partitioning
> ## into 3 clusters.
> data(iris)
> iris.x <- iris[, 1:4]
> 
> for(k in 2:5)
+     print(clusplot(iris.x, pam(iris.x, k)$clustering, diss = FALSE))
$Distances
          [,1]      [,2]
[1,] 0.0000000 0.5452161
[2,] 0.5452161 0.0000000

$Shading
[1] 18.93861 24.06139

$Distances
         [,1]     [,2]     [,3]
[1,] 0.000000 1.433071 2.851715
[2,] 1.433071 0.000000       NA
[3,] 2.851715       NA 0.000000

$Shading
[1] 18.987588 17.166940  9.845472

$Distances
         [,1]    [,2]      [,3]      [,4]
[1,] 0.000000 2.24157 1.6340329 3.0945887
[2,] 2.241570 0.00000        NA        NA
[3,] 1.634033      NA 0.0000000 0.9461858
[4,] 3.094589      NA 0.9461858 0.0000000

$Shading
[1] 12.881766 14.912379 13.652381  7.553474

$Distances
         [,1]      [,2]     [,3]       [,4]       [,5]
[1,] 0.000000 1.9899160 1.552387 3.11516148 3.96536391
[2,] 1.989916 0.0000000       NA         NA 0.94713417
[3,] 1.552387        NA 0.000000 1.17348334 2.22769309
[4,] 3.115161        NA 1.173483 0.00000000 0.04539385
[5,] 3.965364 0.9471342 2.227693 0.04539385 0.00000000

$Shading
[1] 10.369738 11.560147 10.088431 14.857590  5.124093

> 
> 
> .Random.seed <- c(0L,rep(7654L,3))
> ## generate 25 objects, divided into 2 clusters.
> x <- rbind(cbind(rnorm(10,0,0.5), rnorm(10,0,0.5)),
+            cbind(rnorm(15,5,0.5), rnorm(15,5,0.5)))
> print.default(clusplot(px2 <- pam(x, 2)))
$Distances
         [,1]     [,2]
[1,] 0.000000 5.516876
[2,] 5.516876 0.000000

$Shading
[1] 20.18314 22.81686

> 
> clusplot(px2, labels = 2, col.p = 1 + px2$clustering)
>