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3570 7265 d 18 h bates /branches/Matrix-nolmer/ Move lmer back to lme4  
/branches/Matrix-nolmer/ChangeLog
/branches/Matrix-nolmer/DESCRIPTION
/branches/Matrix-nolmer/R/AllClass.R
/branches/Matrix-nolmer/R/dtCMatrix.R
/branches/Matrix-nolmer/src/DEPS.mkf
/branches/Matrix-nolmer/src/Mutils.c
/branches/Matrix-nolmer/src/Mutils.h
/branches/Matrix-nolmer/src/dtCMatrix.c
/branches/Matrix-nolmer/src/dtCMatrix.h
/branches/Matrix-nolmer/src/init.c
/branches/Matrix-nolmer/src/ltCMatrix.c
/branches/Matrix-nolmer/src/ltCMatrix.h
3562 7267 d 11 h bates /branches/Matrix-nolmer/ Update C and R code and man pages and NAMESPACE  
/branches/Matrix-nolmer/R/pedigree.R
/branches/Matrix-nolmer/man/BIC.Rd
/branches/Matrix-nolmer/man/mcmcsamp.Rd
/branches/Matrix-nolmer/tests/lmer.R
/branches/Matrix-nolmer/DESCRIPTION
/branches/Matrix-nolmer/INDEX
/branches/Matrix-nolmer/NAMESPACE
/branches/Matrix-nolmer/src/DEPS.mkf
/branches/Matrix-nolmer/src/Syms.h
/branches/Matrix-nolmer/src/init.c
3557 7267 d 13 h bates /branches/Matrix-nolmer/src/ Removal of lmer-related symbols and functions  
/branches/Matrix-nolmer/src/SOURCES_C.mkf
/branches/Matrix-nolmer/src/Syms.h
/branches/Matrix-nolmer/src/init.c
3548 7267 d 15 h bates /branches/Matrix-nolmer/ New branch for bringing lmer C code back into lme4  
/branches/Matrix-nolmer
3522 7271 d 7 h bates /trunk/Matrix/src/ housekeeping  
/trunk/Matrix/src/init.c
3514 7272 d 10 h bates /trunk/Matrix/src/ Remove vestigial classed argument for dsCMatrix_matrix_solve  
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c
3508 7273 d 18 h bates /trunk/Matrix/ Added triu, tril and band for ddenseMatrix objects.  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/man/band.Rd
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dense.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/init.c
3505 7274 d 17 h bates /trunk/Matrix/src/ Added initial version of dgeMatrix_band but may change design  
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/init.c
3502 7275 d 7 h bates /trunk/Matrix/ Move methods to the CsparseMatrix class  
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
/trunk/Matrix/src/lgTMatrix.c
/trunk/Matrix/src/lgTMatrix.h
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
/trunk/Matrix/src/ltCMatrix.c
3501 7275 d 14 h maechler /trunk/Matrix/ use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/init.c
3488 7276 d 16 h bates /trunk/Matrix/ Use dup_mMatrix_as_dgeMatrix  
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/lsCMatrix.h
3484 7276 d 18 h maechler /trunk/Matrix/ eliminate classed argument from dup_mM*() and dependencies  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dppMatrix.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
3475 7277 d 13 h bates /trunk/Matrix/ Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3468 7278 d 11 h bates /trunk/Matrix/src/ Comment out vestigial functions  
/trunk/Matrix/src/init.c
3460 7278 d 17 h bates /trunk/Matrix/src/ register dup_mMatrix_as_dgeMatrix for coercions.  
/trunk/Matrix/src/init.c
3438 7281 d 7 h bates /trunk/Matrix/ Added methods for sparseQR for qr.qy, qr.qty, qr.coef, qr.resid and qr.fitted  
/trunk/Matrix/R/sparseQR.R
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
/trunk/Matrix/NAMESPACE
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/init.c
3422 7283 d 12 h bates /trunk/Matrix/ Added solve methods for dgCMatrix and documentation  
/trunk/Matrix/man/qr-methods.Rd
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3420 7283 d 20 h bates /trunk/Matrix/ add sparse LU and QR decompositions  
/trunk/Matrix/man/sparseLU-class.Rd
/trunk/Matrix/man/sparseQR-class.Rd
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3415 7285 d 12 h bates /trunk/Matrix/ Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working  
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/cs_utils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
3410 7285 d 16 h maechler /trunk/Matrix/ eliminate sCMatrix_to_gCMatrix now that we have (almost identical) Csparse_symmetric_to_general  
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsCMatrix.h
/trunk/Matrix/src/init.c

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