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3570 7265 d 18 h bates /branches/Matrix-nolmer/ Move lmer back to lme4  
/branches/Matrix-nolmer/ChangeLog
/branches/Matrix-nolmer/DESCRIPTION
/branches/Matrix-nolmer/R/AllClass.R
/branches/Matrix-nolmer/R/dtCMatrix.R
/branches/Matrix-nolmer/src/DEPS.mkf
/branches/Matrix-nolmer/src/Mutils.c
/branches/Matrix-nolmer/src/Mutils.h
/branches/Matrix-nolmer/src/dtCMatrix.c
/branches/Matrix-nolmer/src/dtCMatrix.h
/branches/Matrix-nolmer/src/init.c
/branches/Matrix-nolmer/src/ltCMatrix.c
/branches/Matrix-nolmer/src/ltCMatrix.h
3548 7267 d 15 h bates /branches/Matrix-nolmer/ New branch for bringing lmer C code back into lme4  
/branches/Matrix-nolmer
3518 7271 d 18 h bates /trunk/Matrix/src/ Define and use class_P and mMatrix_as_dgeMatrix  
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/cs_utils.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dsCMatrix.c
3503 7274 d 21 h bates /trunk/Matrix/src/ Remove sections of code that are no longer used  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/dtTMatrix.h
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
3501 7275 d 14 h maechler /trunk/Matrix/ use setAs("ddenseMatrix", "dgeMatrix", *) instead of older specific ones  
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/init.c
3493 7276 d 12 h bates /trunk/Matrix/src/ Add ddiMatrix,dtpMatrix, dspMatrix and dppMatrix conversions. Remove no-longer-used functions.  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
3492 7276 d 16 h bates /trunk/Matrix/src/ Use dup_mMatrix_as_dgeMatrix  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/dgTMatrix.h
3484 7276 d 18 h maechler /trunk/Matrix/ eliminate classed argument from dup_mM*() and dependencies  
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dppMatrix.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dspMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/sparseQR.c
/trunk/Matrix/src/sparseQR.h
3472 7277 d 20 h maechler /trunk/Matrix/src/ comments; cosmetic  
/trunk/Matrix/src/Mutils.c
3462 7278 d 16 h bates /trunk/Matrix/src/ Misunderstood effect of make_d_matrix_triangular and make_d_matrix_symmetric. Now fixed. Use _NOT_A_CLASS_ instead of dmatrix for the name of the class that should not occur.  
/trunk/Matrix/src/Mutils.c
3459 7278 d 17 h bates /trunk/Matrix/src/ updated for general types of classed Matrices, matrices or numeric or logical vectors.  
/trunk/Matrix/src/Mutils.c
3437 7281 d 7 h bates /trunk/Matrix/src/ Added dup_mMatrix_as_dgeMatrix utility  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
2254 7489 d 18 h maechler /trunk/Matrix/ make*_(triangular|symmetric) : now for ldense* as well  
/trunk/Matrix/ChangeLog
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/factorizations.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/ldense.c
/trunk/Matrix/src/ldense.h
2197 7498 d 11 h maechler /trunk/Matrix/src/ new dMatrix_validate and dense_nonpacked_validate  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dgeMatrix.h
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/init.c
2194 7499 d 11 h bates /trunk/Matrix/ Move glmer reweighting to internal_update_ZXy; rearrange the deck chairs  
/trunk/Matrix/INDEX
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/chm_common.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/tests/lmer.R
1876 7602 d 9 h bates /trunk/Matrix/ Modifications to mer2  
/trunk/Matrix/INDEX
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1864 7606 d 15 h maechler /trunk/Matrix/src/ packed_to_full_(double|int) and full_to_packed_*  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/ldense.c
1862 7606 d 22 h maechler /trunk/Matrix/src/ use uplo_P() and diag_P() macros instead of *_value() functions  
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/ltCMatrix.c
1854 7607 d 2 h maechler /trunk/Matrix/src/ + uplo_value(), diag_value()  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
1785 7631 d 12 h maechler /trunk/Matrix/src/ comments  
/trunk/Matrix/src/Mutils.c

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