| Rev |
Age |
Author |
Path |
Log message |
Diff |
Changes |
| 3548 |
7267 d 15 h |
bates |
/branches/Matrix-nolmer/ |
New branch for bringing lmer C code back into lme4 |
|
/branches/Matrix-nolmer
|
| 3309 |
7321 d 19 h |
maechler |
/trunk/Matrix/ |
add lgCMatrix_diag() |
|
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
|
| 3182 |
7365 d 14 h |
maechler |
/trunk/Matrix/ |
a few small changes, comments - on the way to get to a better "Compare" (group method) approach |
|
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/tests/lmer.R
/trunk/Matrix/tests/validObj.R
|
| 3176 |
7368 d 17 h |
maechler |
/trunk/Matrix/ |
eliminate a few old "FIXME"s (and add a new one :-) |
|
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/src/lgCMatrix.c
|
| 3175 |
7368 d 19 h |
maechler |
/trunk/Matrix/man/ |
start massive use of \linkS4class{.} |
|
/trunk/Matrix/man/CAex.Rd
/trunk/Matrix/man/CHMfactor-class.Rd
/trunk/Matrix/man/Cholesky-class.Rd
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/Hilbert.Rd
/trunk/Matrix/man/LU-class.Rd
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/RsparseMatrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/VarCorr.Rd
/trunk/Matrix/man/band.Rd
/trunk/Matrix/man/compMatrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsRMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/expm.Rd
/trunk/Matrix/man/generalMatrix-class.Rd
/trunk/Matrix/man/index-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lmer-class.Rd
/trunk/Matrix/man/lmer.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/lu.Rd
/trunk/Matrix/man/mcmcsamp.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/pedigree-class.Rd
/trunk/Matrix/man/pedigree.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/man/unused-classes.Rd
|
| 2362 |
7438 d 16 h |
maechler |
/trunk/Matrix/ |
put "mm" and "y" datasets into list "KNex" and change the docu, examples, tests, and one vignette accordingly;
ready for release of 0.995-6 |
|
/trunk/Matrix/data/KNex.rda
/trunk/Matrix/man/KNex.Rd
/trunk/Matrix/tests/dpoMatrix.Rout.save
/trunk/Matrix/data/mm.rda
/trunk/Matrix/data/y.rda
/trunk/Matrix/man/mm.Rd
/trunk/Matrix/man/y.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/TODO
/trunk/Matrix/inst/doc/Comparisons.Rnw
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/externalFormats.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/dg_Matrix.R
/trunk/Matrix/tests/matprod.R
/trunk/Matrix/tests/mm-redo.R
/trunk/Matrix/tests/simple.R
|
| 2256 |
7489 d 17 h |
maechler |
/trunk/Matrix/ |
add to tests: now also check setAs("matrix", *) |
|
/trunk/Matrix/R/dpoMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/tests/Class+Meth.R
|
| 2255 |
7489 d 18 h |
maechler |
/trunk/Matrix/ |
Class cleanup; particularly ldense* ones |
|
/trunk/Matrix/R/lgeMatrix.R
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgRMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
|
| 2208 |
7496 d 14 h |
maechler |
/trunk/Matrix/ |
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings |
|
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/man/Matrix.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/simple.R
|
| 2123 |
7509 d 17 h |
maechler |
/trunk/Matrix/ |
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods |
|
/trunk/Matrix/R/diagMatrix.R
/trunk/Matrix/R/ltTMatrix.R
/trunk/Matrix/man/Diagonal.Rd
/trunk/Matrix/man/ddiMatrix-class.Rd
/trunk/Matrix/man/diagonalMatrix-class.Rd
/trunk/Matrix/man/ldiMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/lsparseMatrix-classes.Rd
|
| 2059 |
7534 d 13 h |
maechler |
/trunk/Matrix/ |
make tcrossprod() use 2 arguments (x, y=NULL) |
|
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Csparse.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/tcrossprod.Rd
/trunk/Matrix/tests/dtpMatrix.R
|
| 1869 |
7604 d 17 h |
maechler |
/trunk/Matrix/ |
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ... |
|
/trunk/Matrix/ChangeLog
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dtCMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgeMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/R/zzz.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/denseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Makefile
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/base-matrix-fun.R
/trunk/Matrix/tests/dg_Matrix.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/simple.R
|
| 1857 |
7607 d 1 h |
maechler |
/trunk/Matrix/ |
some "Summary" methods; some "Compare" group methods; logical dense matrices |
|
/trunk/Matrix/R/ldenseMatrix.R
/trunk/Matrix/R/lgeMatrix.R
/trunk/Matrix/man/ldenseMatrix-class.Rd
/trunk/Matrix/man/lgeMatrix-class.Rd
/trunk/Matrix/man/lsyMatrix-class.Rd
/trunk/Matrix/man/ltrMatrix-class.Rd
/trunk/Matrix/Done
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dppMatrix.R
/trunk/Matrix/R/dsCMatrix.R
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/dspMatrix.R
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtTMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/R/ltCMatrix.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgeMatrix-class.Rd
/trunk/Matrix/man/dpoMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/unused-classes.Rd
|
| 1833 |
7615 d 15 h |
maechler |
/trunk/Matrix/ |
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes |
|
/trunk/Matrix/R/dsparseMatrix.R
/trunk/Matrix/man/CsparseMatrix-class.Rd
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/AllGeneric.R
/trunk/Matrix/R/Auxiliaries.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/Tsparse.R
/trunk/Matrix/R/dMatrix.R
/trunk/Matrix/R/ddenseMatrix.R
/trunk/Matrix/R/denseMatrix.R
/trunk/Matrix/R/dgCMatrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/dgeMatrix.R
/trunk/Matrix/R/dsyMatrix.R
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/lsparseMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/inst/test-tools.R
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Subassign-methods.Rd
/trunk/Matrix/man/TsparseMatrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/man/ddenseMatrix-class.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dsCMatrix-class.Rd
/trunk/Matrix/man/dsparseMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/src/Csparse.c
/trunk/Matrix/tests/Class+Meth.R
/trunk/Matrix/tests/bind.R
/trunk/Matrix/tests/dgTMatrix.R
/trunk/Matrix/tests/group-methods.R
/trunk/Matrix/tests/indexing.R
/trunk/Matrix/tests/indexing.Rout.save
/trunk/Matrix/tests/matprod.R
|
| 1782 |
7632 d 20 h |
maechler |
/trunk/Matrix/man/ |
new symmetric* and triangular* classes` docu: link to them in other places |
|
/trunk/Matrix/man/symmetricMatrix-class.Rd
/trunk/Matrix/man/triangularMatrix-class.Rd
/trunk/Matrix/man/dsyMatrix-class.Rd
/trunk/Matrix/man/dtCMatrix-class.Rd
/trunk/Matrix/man/dtRMatrix-class-def.Rd
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
|
| 1746 |
7646 d 17 h |
maechler |
/trunk/Matrix/ |
printing of sparse logicals; "[" reorganization (part 1) |
|
/trunk/Matrix/ChangeLog
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/Matrix.R
/trunk/Matrix/R/dgTMatrix.R
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/R/lgTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/man/Matrix-class.Rd
/trunk/Matrix/man/Xtrct-methods.Rd
/trunk/Matrix/man/dgCMatrix-class.Rd
/trunk/Matrix/man/dgTMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/pMatrix-class.Rd
/trunk/Matrix/man/sparseMatrix-class.Rd
/trunk/Matrix/tests/Class+Meth.R
|
| 1730 |
7649 d 4 h |
maechler |
/trunk/Matrix/man/ |
line wrap; + example |
|
/trunk/Matrix/man/lsparseMatrix-classes.Rd
|
| 1533 |
7740 d 17 h |
bates |
/trunk/Matrix/man/ |
Adding logical sparse matrix methods |
|
/trunk/Matrix/man/dCholCMatrix-class.Rd
/trunk/Matrix/man/lsparseMatrix-classes.Rd
|
| 1476 |
7747 d 19 h |
bates |
/trunk/Matrix/ |
Release 0.95-8 with bug fix for sparse symmetric solve |
|
/trunk/Matrix/ChangeLog
/trunk/Matrix/DESCRIPTION
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.h
/trunk/Matrix/src/lmer.c
|
| 1473 |
7748 d 8 h |
bates |
/trunk/Matrix/ |
More logical sparse matrix methods |
|
/trunk/Matrix/R/lsCMatrix.R
/trunk/Matrix/man/lsparseMatrix-classes.Rd
/trunk/Matrix/man/lgCMatrix-class.Rd
/trunk/Matrix/INDEX
/trunk/Matrix/R/lgCMatrix.R
/trunk/Matrix/man/dMatrix-class.Rd
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lgCMatrix.h
|
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