R-packages – /branches/Matrix-nolmer/R/AllClass.R

Rev 3570 – Move lmer back to lme4

bates — Mon, 04 Sep 2006 16:01:11 +0000

bates – 12 file(s) modified
Move lmer back to lme4

~ /branches/Matrix-nolmer/ChangeLog
~ /branches/Matrix-nolmer/DESCRIPTION
~ /branches/Matrix-nolmer/R/AllClass.R
~ /branches/Matrix-nolmer/R/dtCMatrix.R
~ /branches/Matrix-nolmer/src/DEPS.mkf
~ /branches/Matrix-nolmer/src/dtCMatrix.c
~ /branches/Matrix-nolmer/src/dtCMatrix.h
~ /branches/Matrix-nolmer/src/init.c
~ /branches/Matrix-nolmer/src/ltCMatrix.c
~ /branches/Matrix-nolmer/src/ltCMatrix.h
~ /branches/Matrix-nolmer/src/Mutils.c
~ /branches/Matrix-nolmer/src/Mutils.h

Rev 3560 – Finish removal of lmer-related names

bates — Sat, 02 Sep 2006 20:46:12 +0000

bates – 3 file(s) modified
Finish removal of lmer-related names

~ /branches/Matrix-nolmer/NAMESPACE
~ /branches/Matrix-nolmer/R/AllClass.R
~ /branches/Matrix-nolmer/R/AllGeneric.R

Rev 3548 – New branch for bringing lmer C code back into lme4

bates — Sat, 02 Sep 2006 19:06:55 +0000

bates – 1 file(s) modified
New branch for bringing lmer C code back into lme4

+ /branches/Matrix-nolmer (copied from /trunk/Matrix@3547)

Rev 3524 – several smallish fixes

maechler — Wed, 30 Aug 2006 21:35:09 +0000

maechler – 19 file(s) modified
several smallish fixes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/man/sparseLU-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/factorizing.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/other-pkgs.R
~ /trunk/Matrix/tests/simple.R

Rev 3496 – a bit more "MatrixFactorization" ..

maechler — Fri, 25 Aug 2006 14:39:45 +0000

maechler – 5 file(s) modified
a bit more "MatrixFactorization" ..

~ /trunk/Matrix/man/CHMfactor-class.Rd
+ /trunk/Matrix/man/MatrixFactorization-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
+ /trunk/Matrix/R/MatrixFactorization.R

Rev 3495 – 1st stab at "MatrixFactorization" class; exporting CHMfactor etc

maechler — Fri, 25 Aug 2006 10:44:48 +0000

maechler – 7 file(s) modified
1st stab at "MatrixFactorization" class; exporting CHMfactor etc

~ /trunk/Matrix/man/CHMfactor-class.Rd
~ /trunk/Matrix/man/Cholesky.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R

Rev 3484 – eliminate classed argument from dup_mM*() and dependencies

maechler — Thu, 24 Aug 2006 16:21:18 +0000

maechler – 21 file(s) modified
eliminate classed argument from dup_mM*() and dependencies

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
~ /trunk/Matrix/src/sparseQR.c
~ /trunk/Matrix/src/sparseQR.h

Rev 3475 – Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

bates — Wed, 23 Aug 2006 21:25:32 +0000

bates – 4 file(s) modified
Remove classes lCholCMatrix and dCholCMatrix, now using CHMfactor classes instead

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 3451 – rename class "LU" to "denseLU" and make "LU" virtual

maechler — Mon, 21 Aug 2006 15:24:47 +0000

maechler – 12 file(s) modified
rename class "LU" to "denseLU" and make "LU" virtual

~ /trunk/Matrix/man/LU-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pMatrix.R
~ /trunk/Matrix/R/sparseQR.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/tests/other-pkgs.R
x /trunk/Matrix/tests/sparseQR.R

Rev 3420 – add sparse LU and QR decompositions

bates — Thu, 17 Aug 2006 13:57:53 +0000

bates – 11 file(s) modified
add sparse LU and QR decompositions

~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
+ /trunk/Matrix/man/sparseLU-class.Rd
+ /trunk/Matrix/man/sparseQR-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3415 – Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

bates — Tue, 15 Aug 2006 22:31:30 +0000

bates – 7 file(s) modified
Adding dgCMatrix_{lusol,qrsol,QR} but QR still not working

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/cs_utils.c
~ /trunk/Matrix/src/cs_utils.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c

Rev 3350 – change unused class "correlation" to "corMatrix"

maechler — Mon, 31 Jul 2006 12:11:35 +0000

maechler – 6 file(s) modified
change unused class "correlation" to "corMatrix"

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/lmer.R

Rev 3340 – many method cleanups; notably some "dgC" -> "Csparse" generaliztations

maechler — Sat, 22 Jul 2006 17:59:53 +0000

maechler – 41 file(s) modified
many method cleanups; notably some "dgC" -> "Csparse" generaliztations

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/band.Rd
~ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
+ /trunk/Matrix/man/replValue-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3310 – miscellaneous small things, including extended tests; see also ChangeLog

maechler — Mon, 10 Jul 2006 16:08:05 +0000

maechler – 22 file(s) modified
miscellaneous small things, including extended tests; see also ChangeLog

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/lu.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/bind.R
+ /trunk/Matrix/tests/bind.Rout.save
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 3288 – Establish new class glmer; modify validity check on pedigree to ...

bates — Thu, 06 Jul 2006 15:14:12 +0000

bates – 3 file(s) modified
Establish new class glmer; modify validity check on pedigree to account for nonparallel patterns of missingness in parents

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R

Rev 3172 – useDynlib(*, .registration=TRUE)

maechler — Tue, 23 May 2006 08:01:44 +0000

maechler – 33 file(s) modified
useDynlib(*, .registration=TRUE)

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/eigen.R
~ /trunk/Matrix/R/lCholCMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/R/LU.R
~ /trunk/Matrix/R/pedigree.R
~ /trunk/Matrix/R/Tsparse.R

Rev 3168 – Copy colcount in CHOLMOD supernodal factorization

bates — Mon, 22 May 2006 19:14:39 +0000

bates – 1 file(s) modified
Copy colcount in CHOLMOD supernodal factorization

~ /trunk/Matrix/R/AllClass.R

Rev 3138 – Added check on sire and dam indices to pedigree function ...

bates — Tue, 16 May 2006 19:11:00 +0000

bates – 2 file(s) modified
Added check on sire and dam indices to pedigree function and class validation function

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/pedigree.R

Rev 3085 – make pedigree class more memory-efficient; add pedigree()

maechler — Fri, 21 Apr 2006 15:44:39 +0000

maechler – 5 file(s) modified
make pedigree class more memory-efficient; add pedigree()

+ /trunk/Matrix/man/pedigree-class.Rd
+ /trunk/Matrix/man/pedigree.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/pedigree.R

Rev 3063 – pedigree class added

bates — Thu, 13 Apr 2006 11:12:51 +0000

bates – 3 file(s) modified
pedigree class added

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 3024 – Change name of lmer.ranef class to ranef.lmer, add coef.lmer and ...

bates — Tue, 21 Mar 2006 12:33:28 +0000

bates – 4 file(s) modified
Change name of lmer.ranef class to ranef.lmer, add coef.lmer and update plot methods for these classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R

Rev 2361 – use isPacked() [internal] instead of private class "packedMatrix"

maechler — Wed, 15 Mar 2006 17:42:03 +0000

maechler – 3 file(s) modified
use isPacked() [internal] instead of private class "packedMatrix"

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/dMatrix.R

Rev 2357 – sparse: "[<-" and better arithmetic; other tweaks

maechler — Mon, 13 Mar 2006 14:07:58 +0000

maechler – 26 file(s) modified
sparse: "[<-" and better arithmetic; other tweaks

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/TODO

Rev 2347 – lmer(): non-trivial summary() method -> summary.*mer classes

maechler — Tue, 07 Mar 2006 11:05:08 +0000

maechler – 7 file(s) modified
lmer(): non-trivial summary() method -> summary.*mer classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2255 – Class cleanup; particularly ldense* ones

maechler — Mon, 23 Jan 2006 16:04:12 +0000

maechler – 24 file(s) modified
Class cleanup; particularly ldense* ones

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/lsyMatrix-class.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
x /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/TODO

Rev 2236 – "dsy" no longer extends "dge"; other small fixes

maechler — Fri, 20 Jan 2006 18:13:39 +0000

maechler – 14 file(s) modified
"dsy" no longer extends "dge"; other small fixes

~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/tests/validObj.R

Rev 2208 – make Matrix() "smart" -- with help of quite a few ...

maechler — Mon, 16 Jan 2006 20:03:48 +0000

maechler – 24 file(s) modified
make Matrix() "smart" -- with help of quite a few new setAs(. , .) settings

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/simple.R

Rev 2199 – modifications to lmer and related classes

bates — Sun, 15 Jan 2006 19:18:20 +0000

bates – 7 file(s) modified
modifications to lmer and related classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer-class.Rd
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/tests/lmer.R

Rev 2198 – new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); ...

maechler — Sat, 14 Jan 2006 23:41:55 +0000

maechler – 16 file(s) modified
new coercion to dtr* and dsy* using isSymmetric() and isTriangular(); fix validity checking; some class descriptions

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/tests/dpoMatrix.Rout.save
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/validObj.R

Rev 2192 – Updating the list of slots on factorable and non-factorable classes

bates — Fri, 13 Jan 2006 23:45:45 +0000

bates – 2 file(s) modified
Updating the list of slots on factorable and non-factorable classes

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dtrMatrix.R

Rev 2187 – Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots ...

bates — Thu, 12 Jan 2006 23:39:56 +0000

bates – 4 file(s) modified
Remove redundant registration of dspMatrix_trf; incorporate wts and wrkres slots in mer class

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/Syms.h

Rev 2181 – Switch to supernodal Cholesky representation of mer objects

bates — Thu, 12 Jan 2006 03:41:25 +0000

bates – 3 file(s) modified
Switch to supernodal Cholesky representation of mer objects

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R

Rev 2158 – add ", drop = FALSE" in lmer.coef constructions; plus a ...

maechler — Tue, 10 Jan 2006 18:11:23 +0000

maechler – 7 file(s) modified
add ", drop = FALSE" in lmer.coef constructions; plus a few comments

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/lmer.R

Rev 2123 – "diagonalMatrix" class and subclasses with a few methods; very basic ...

maechler — Tue, 03 Jan 2006 16:42:31 +0000

maechler – 15 file(s) modified
"diagonalMatrix" class and subclasses with a few methods; very basic "ltTMatrix" methods

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
+ /trunk/Matrix/man/ddiMatrix-class.Rd
+ /trunk/Matrix/man/Diagonal.Rd
+ /trunk/Matrix/man/diagonalMatrix-class.Rd
+ /trunk/Matrix/man/ldiMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgeMatrix.R
+ /trunk/Matrix/R/diagMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
+ /trunk/Matrix/R/ltTMatrix.R
~ /trunk/Matrix/TODO

Rev 1997 – Adding PACKAGE = to .Call lines

bates — Fri, 11 Nov 2005 14:57:22 +0000

bates – 14 file(s) modified
Adding PACKAGE = to .Call lines

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/bCrosstab.R
~ /trunk/Matrix/R/dgBCMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R

Rev 1925 – Tidying up

bates — Tue, 11 Oct 2005 18:08:46 +0000

bates – 4 file(s) modified
Tidying up

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/TODO

Rev 1894 – More updates on lmer - still not quite correct

bates — Thu, 06 Oct 2005 03:07:23 +0000

bates – 6 file(s) modified
More updates on lmer - still not quite correct

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Syms.h

Rev 1876 – Modifications to mer2

bates — Mon, 03 Oct 2005 01:44:56 +0000

bates – 9 file(s) modified
Modifications to mer2

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1865 – move "factors" slot to "Matrix"

maechler — Wed, 28 Sep 2005 19:31:36 +0000

maechler – 8 file(s) modified
move "factors" slot to "Matrix"

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/TODO

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

maechler — Wed, 28 Sep 2005 08:56:42 +0000

maechler – 37 file(s) modified
some "Summary" methods; some "Compare" group methods; logical dense matrices

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
+ /trunk/Matrix/man/ldenseMatrix-class.Rd
+ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
+ /trunk/Matrix/man/lsyMatrix-class.Rd
+ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
+ /trunk/Matrix/R/ldenseMatrix.R
+ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R