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2186 7501 d 1 h bates /branches/Matrix-mer2/src/ Use dofree instead of free for argument name  
/branches/Matrix-mer2/src/chm_common.c
/branches/Matrix-mer2/src/chm_common.h
/branches/Matrix-mer2/src/init.c
2142 7507 d 16 h bates /branches/Matrix-mer2/src/ Redundant declaration of dspMatrix_trf; add visibility if defined  
/branches/Matrix-mer2/src/init.c
2127 7508 d 18 h bates /branches/Matrix-mer2/ Merging (not entirely successfully)  
/branches/Matrix-mer2/R/diagMatrix.R
/branches/Matrix-mer2/R/ltTMatrix.R
/branches/Matrix-mer2/R/AllClass.R
/branches/Matrix-mer2/R/AllGeneric.R
/branches/Matrix-mer2/R/Auxiliaries.R
/branches/Matrix-mer2/R/Csparse.R
/branches/Matrix-mer2/R/LU.R
/branches/Matrix-mer2/R/Matrix.R
/branches/Matrix-mer2/R/Tsparse.R
/branches/Matrix-mer2/R/denseMatrix.R
/branches/Matrix-mer2/R/dgCMatrix.R
/branches/Matrix-mer2/R/dgRMatrix.R
/branches/Matrix-mer2/R/dgeMatrix.R
/branches/Matrix-mer2/R/dpoMatrix.R
/branches/Matrix-mer2/R/dppMatrix.R
/branches/Matrix-mer2/R/dsCMatrix.R
/branches/Matrix-mer2/R/dsTMatrix.R
/branches/Matrix-mer2/R/dspMatrix.R
/branches/Matrix-mer2/R/dsyMatrix.R
/branches/Matrix-mer2/R/dtCMatrix.R
/branches/Matrix-mer2/R/dtTMatrix.R
/branches/Matrix-mer2/R/dtpMatrix.R
/branches/Matrix-mer2/R/dtrMatrix.R
/branches/Matrix-mer2/R/eigen.R
/branches/Matrix-mer2/R/lCholCMatrix.R
/branches/Matrix-mer2/R/ldenseMatrix.R
/branches/Matrix-mer2/R/lgTMatrix.R
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/R/lsCMatrix.R
/branches/Matrix-mer2/R/ltCMatrix.R
/branches/Matrix-mer2/R/sparseMatrix.R
/branches/Matrix-mer2/src/dgeMatrix.c
/branches/Matrix-mer2/src/dgeMatrix.h
/branches/Matrix-mer2/src/init.c
2101 7514 d 19 h bates /branches/Matrix-mer2/ Changes to glmer_PQL and glmer_devLaplace but still not working properly  
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
2073 7530 d 17 h bates /branches/Matrix-mer2/ Still messing around with glmer_devLaplace  
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
2071 7531 d 15 h bates /branches/Matrix-mer2/ Messing with the Laplace approximation  
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
2046 7537 d 16 h bates /branches/Matrix-mer2/ Install and use status flags  
/branches/Matrix-mer2/R/AllClass.R
/branches/Matrix-mer2/src/Syms.h
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
2042 7539 d 11 h bates /branches/Matrix-mer2/src/ Allow access to mer_ECMEsteps  
/branches/Matrix-mer2/src/init.c
2040 7541 d 16 h bates /branches/Matrix-mer2/src/ Add mer_gradient to init.c list  
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
2028 7545 d 23 h bates /branches/Matrix-mer2/src/ Added crossprod method for Csparse and dense  
/branches/Matrix-mer2/src/Csparse.c
/branches/Matrix-mer2/src/Csparse.h
/branches/Matrix-mer2/src/init.c
2027 7547 d 23 h bates /branches/Matrix-mer2/ Merge updates to Matrix package  
/branches/Matrix-mer2/man/simulate.Rd
/branches/Matrix-mer2/R/Csparse.R
/branches/Matrix-mer2/R/Tsparse.R
/branches/Matrix-mer2/R/denseMatrix.R
/branches/Matrix-mer2/R/zzz.R
/branches/Matrix-mer2/inst/doc/Comparisons.Rnw
/branches/Matrix-mer2/man/CsparseMatrix-class.Rd
/branches/Matrix-mer2/man/TsparseMatrix-class.Rd
/branches/Matrix-mer2/man/denseMatrix-class.Rd
/branches/Matrix-mer2/man/dgeMatrix-class.Rd
/branches/Matrix-mer2/src/Csparse.c
/branches/Matrix-mer2/src/Csparse.h
/branches/Matrix-mer2/src/Makefile
/branches/Matrix-mer2/src/Makefile.win
/branches/Matrix-mer2/src/Tsparse.c
/branches/Matrix-mer2/src/dense.c
/branches/Matrix-mer2/src/dense.h
/branches/Matrix-mer2/src/dgCMatrix.c
/branches/Matrix-mer2/src/dgTMatrix.c
/branches/Matrix-mer2/src/dsCMatrix.c
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/tests/matprod.R
2021 7551 d 16 h bates /branches/Matrix-mer2/ Use defaults for useScale and REML  
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
2011 7560 d 19 h bates /branches/Matrix-mer2/ Add slots to mer object, change to automatic factor and mer_secondary  
/branches/Matrix-mer2/R/AllClass.R
/branches/Matrix-mer2/R/dMatrix.R
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/Syms.h
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
2010 7561 d 2 h bates /branches/Matrix-mer2/ Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.  
/branches/Matrix-mer2/R/bCrosstab.R
/branches/Matrix-mer2/R/dgBCMatrix.R
/branches/Matrix-mer2/R/pdmatrix.R
/branches/Matrix-mer2/man/bCrosstab.Rd
/branches/Matrix-mer2/man/dgBCMatrix-class.Rd
/branches/Matrix-mer2/man/pdmatrix-class.Rd
/branches/Matrix-mer2/src/dgBCMatrix.c
/branches/Matrix-mer2/src/dgBCMatrix.h
/branches/Matrix-mer2/INDEX
/branches/Matrix-mer2/NAMESPACE
/branches/Matrix-mer2/R/AllClass.R
/branches/Matrix-mer2/R/dgCMatrix.R
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/inst/doc/Comparisons.Rnw
/branches/Matrix-mer2/inst/doc/Introduction.Rnw
/branches/Matrix-mer2/man/VarCorr.Rd
/branches/Matrix-mer2/man/dpoMatrix-class.Rd
/branches/Matrix-mer2/man/lmer-class.Rd
/branches/Matrix-mer2/man/mcmcsamp.Rd
/branches/Matrix-mer2/man/ranef.Rd
/branches/Matrix-mer2/src/DEPS.mkf
/branches/Matrix-mer2/src/SOURCES_C.mkf
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
/branches/Matrix-mer2/tests/Class+Meth.R
2003 7562 d 15 h bates /branches/Matrix-mer2/src/ mer2_simulate  
/branches/Matrix-mer2/src/dpoMatrix.c
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
1993 7564 d 0 h bates /branches/Matrix-mer2/src/ gradient components for mer2 objects  
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
1967 7566 d 16 h bates /branches/Matrix-mer2/src/ Add call and family to the mer2 object  
/branches/Matrix-mer2/src/Syms.h
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
1966 7567 d 2 h bates /branches/Matrix-mer2/src/ Separate creation of Zt from creation of the mer2 object  
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h
1961 7570 d 18 h bates /branches/Matrix-mer2/ Factoring building matrices from allocating matrices - not yet complete  
/branches/Matrix-mer2/R/AllClass.R
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/Syms.h
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
1958 7571 d 18 h bates /branches/Matrix-mer2/ Unsuccessful attempt to add IPLS iterations  
/branches/Matrix-mer2/R/lmer.R
/branches/Matrix-mer2/src/init.c
/branches/Matrix-mer2/src/lmer.c
/branches/Matrix-mer2/src/lmer.h

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