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Rev Age Author Path Log message Diff Changes
1929 7583 d 15 h bates /branches/Matrix-mer2/ Incorporating CHOLMOD-based lmer  
/branches/Matrix-mer2
1876 7602 d 9 h bates /trunk/Matrix/ Modifications to mer2  
/trunk/Matrix/INDEX
/trunk/Matrix/R/AllClass.R
/trunk/Matrix/R/lmer.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/chm_common.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1864 7606 d 15 h maechler /trunk/Matrix/src/ packed_to_full_(double|int) and full_to_packed_*  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/ldense.c
1862 7606 d 22 h maechler /trunk/Matrix/src/ use uplo_P() and diag_P() macros instead of *_value() functions  
/trunk/Matrix/src/HBMM.c
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dppMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/lgCMatrix.c
/trunk/Matrix/src/lsCMatrix.c
/trunk/Matrix/src/ltCMatrix.c
1854 7607 d 2 h maechler /trunk/Matrix/src/ + uplo_value(), diag_value()  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
1781 7633 d 17 h maechler /trunk/Matrix/ add triangularMatrix_validate and symmetric* to C code and make (re!)use of it - not quite everywhere?  
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dspMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/tests/dpoMatrix.Rout.save
1735 7647 d 13 h bates /trunk/Matrix/ Coercion method for graphNEL to sparseMatrix class  
/trunk/Matrix/R/dsTMatrix.R
/trunk/Matrix/R/sparseMatrix.R
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgTMatrix.h
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
1631 7692 d 20 h bates /trunk/Matrix/src/ Added utilities vecSum and vecIncrement  
/trunk/Matrix/src/Mutils.h
1577 7719 d 12 h bates /trunk/Matrix/src/ Isolating and cleaning up the mer, lmer, and glmer functions  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
1536 7740 d 17 h bates /trunk/Matrix/src/ Added Matrix_expand_pointers (callable from R) and moved utility for duplicating slots  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
1317 7788 d 20 h bates /trunk/Matrix/src/ Rename expand_column_pointers to expand_cmpPt (expand compressed pointers)  
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/dgBCMatrix.c
/trunk/Matrix/src/dgCMatrix.c
1209 7815 d 15 h bates /trunk/Matrix/ Methods and coercions for the dtpMatrix class  
/trunk/Matrix/R/dtpMatrix.R
/trunk/Matrix/man/dtpMatrix-class.Rd
/trunk/Matrix/tests/dtpMatrix.R
/trunk/Matrix/INDEX
/trunk/Matrix/NAMESPACE
/trunk/Matrix/R/dtrMatrix.R
/trunk/Matrix/man/dtrMatrix-class.Rd
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dtpMatrix.c
/trunk/Matrix/src/dtpMatrix.h
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/dtrMatrix.h
/trunk/Matrix/src/init.c
1203 7816 d 5 h bates /trunk/Matrix/src/ Clean up *_validate functions  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtrMatrix.c
1199 7816 d 16 h bates /trunk/Matrix/src/ shorten csc_components_transpose to csc_compTr  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/sscCrosstab.c
1190 7818 d 16 h bates /trunk/Matrix/ Internationalization and localization  
/trunk/Matrix/inst/po
/trunk/Matrix/inst/po/LL
/trunk/Matrix/inst/po/LL/LC_MESSAGES
/trunk/Matrix/inst/po/LL/LC_MESSAGES/Matrix.mo
/trunk/Matrix/inst/po/LL/LC_MESSAGES/R-Matrix.mo
/trunk/Matrix/po
/trunk/Matrix/po/Matrix.pot
/trunk/Matrix/po/R-Matrix.pot
/trunk/Matrix/src/LU.c
/trunk/Matrix/src/LU.h
/trunk/Matrix/src/cblas.h
/trunk/Matrix/src/flame.c
/trunk/Matrix/src/flame.h
/trunk/Matrix/src/ldl.c
/trunk/Matrix/src/ldl.h
/trunk/Matrix/ChangeLog
/trunk/Matrix/Doxyfile
/trunk/Matrix/src/DEPS.mkf
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/SOURCES_C.mkf
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/dense.c
/trunk/Matrix/src/dgBCMatrix.c
/trunk/Matrix/src/dgCMatrix.c
/trunk/Matrix/src/dgTMatrix.c
/trunk/Matrix/src/dgeMatrix.c
/trunk/Matrix/src/dpoMatrix.c
/trunk/Matrix/src/dsCMatrix.c
/trunk/Matrix/src/dsTMatrix.c
/trunk/Matrix/src/dsyMatrix.c
/trunk/Matrix/src/dtCMatrix.c
/trunk/Matrix/src/dtTMatrix.c
/trunk/Matrix/src/dtrMatrix.c
/trunk/Matrix/src/factorizations.c
/trunk/Matrix/src/factorizations.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/sscCrosstab.c
/trunk/Matrix/src/ssclme.c
/trunk/Matrix/src/triplet_to_col.c
/trunk/Matrix/src/triplet_to_col.h
1168 7821 d 21 h bates /trunk/Matrix/src/ Inlined function declarations moved within the conditional expression  
/trunk/Matrix/src/Mutils.h
1131 7825 d 9 h bates /trunk/Matrix/src/ Clean up documentation errors exposed by doxygen  
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/dgBCMatrix.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/ssclme.c
1054 7837 d 2 h bates /trunk/Matrix/ rearranging utility functions in the C code  
/trunk/Matrix/Done
/trunk/Matrix/R/dgBCMatrix.R
/trunk/Matrix/TODO
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/dgBCMatrix.c
/trunk/Matrix/src/dgBCMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
992 7843 d 16 h bates /trunk/Matrix/src/ Move the make_named function to Mutils as Matrix_make_named  
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/bCrosstab.c
977 7844 d 20 h bates /trunk/Matrix/src/ Renaming and reorganizing classes  
/trunk/Matrix/src/LU.c
/trunk/Matrix/src/LU.h
/trunk/Matrix/src/Mutils.c
/trunk/Matrix/src/Mutils.h
/trunk/Matrix/src/bCrosstab.c
/trunk/Matrix/src/bCrosstab.h
/trunk/Matrix/src/cscBlocked.c
/trunk/Matrix/src/cscBlocked.h
/trunk/Matrix/src/cscMatrix.c
/trunk/Matrix/src/cscMatrix.h
/trunk/Matrix/src/geMatrix.c
/trunk/Matrix/src/geMatrix.h
/trunk/Matrix/src/init.c
/trunk/Matrix/src/lmer.c
/trunk/Matrix/src/lmer.h
/trunk/Matrix/src/poMatrix.c
/trunk/Matrix/src/poMatrix.h
/trunk/Matrix/src/sscChol.h
/trunk/Matrix/src/sscCrosstab.c
/trunk/Matrix/src/sscCrosstab.h
/trunk/Matrix/src/sscMatrix.c
/trunk/Matrix/src/sscMatrix.h
/trunk/Matrix/src/syMatrix.c
/trunk/Matrix/src/syMatrix.h
/trunk/Matrix/src/trMatrix.c
/trunk/Matrix/src/trMatrix.h
/trunk/Matrix/src/triplet.c
/trunk/Matrix/src/triplet.h
/trunk/Matrix/src/triplet_to_col.c
/trunk/Matrix/src/triplet_to_col.h
/trunk/Matrix/src/tscMatrix.c
/trunk/Matrix/src/tscMatrix.h

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