R-packages – /branches/Matrix-mer2/man/VarCorr.Rd

Rev 2010 – Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

bates — Sun, 13 Nov 2005 14:00:15 +0000

bates – 26 file(s) modified
Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/inst/doc/Comparisons.Rnw
~ /branches/Matrix-mer2/inst/doc/Introduction.Rnw
x /branches/Matrix-mer2/man/bCrosstab.Rd
x /branches/Matrix-mer2/man/dgBCMatrix-class.Rd
~ /branches/Matrix-mer2/man/dpoMatrix-class.Rd
~ /branches/Matrix-mer2/man/lmer-class.Rd
~ /branches/Matrix-mer2/man/mcmcsamp.Rd
x /branches/Matrix-mer2/man/pdmatrix-class.Rd
~ /branches/Matrix-mer2/man/ranef.Rd
~ /branches/Matrix-mer2/man/VarCorr.Rd
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
x /branches/Matrix-mer2/R/bCrosstab.R
x /branches/Matrix-mer2/R/dgBCMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
x /branches/Matrix-mer2/R/pdmatrix.R
~ /branches/Matrix-mer2/src/DEPS.mkf
x /branches/Matrix-mer2/src/dgBCMatrix.c
x /branches/Matrix-mer2/src/dgBCMatrix.h
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/lmer.h
~ /branches/Matrix-mer2/src/SOURCES_C.mkf
~ /branches/Matrix-mer2/tests/Class+Meth.R

Rev 1929 – Incorporating CHOLMOD-based lmer

bates — Fri, 21 Oct 2005 19:33:37 +0000

bates – 1 file(s) modified
Incorporating CHOLMOD-based lmer

+ /branches/Matrix-mer2 (copied from /trunk/Matrix@1928)

Rev 1699 – Remove OrchardSprays examples

bates — Sun, 07 Aug 2005 21:59:32 +0000

bates – 3 file(s) modified
Remove OrchardSprays examples

~ /trunk/Matrix/man/fixef.Rd
~ /trunk/Matrix/man/ranef.Rd
~ /trunk/Matrix/man/VarCorr.Rd

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1330 – Release of lme_0.95-1

bates — Sat, 02 Apr 2005 14:41:46 +0000

bates – 36 file(s) modified
Release of lme_0.95-1

~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
x /trunk/lme4/inst/doc/MixedEffects.Rnw
~ /trunk/lme4/man/BIC.Rd
x /trunk/lme4/man/coefGets.Rd
~ /trunk/lme4/man/fixef.Rd
x /trunk/lme4/man/GLMM-class.Rd
x /trunk/lme4/man/GLMM.Rd
x /trunk/lme4/man/lme-class.Rd
x /trunk/lme4/man/lme.Rd
x /trunk/lme4/man/lmeControl.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
+ /trunk/lme4/man/lmerControl.Rd (copied from /trunk/lme4/man/lmeControl.Rd@1305)
~ /trunk/lme4/man/lmList-class.Rd
~ /trunk/lme4/man/lmList.Rd
~ /trunk/lme4/man/ranef.Rd
x /trunk/lme4/man/sscCrosstab-class.Rd
x /trunk/lme4/man/sscCrosstab.Rd
x /trunk/lme4/man/ssclme-class.Rd
x /trunk/lme4/man/summary.GLMM-class.Rd
x /trunk/lme4/man/summary.lme-class.Rd
~ /trunk/lme4/man/summary.lmer-class.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/ccoef.R
x /trunk/lme4/R/GLMM.R
x /trunk/lme4/R/GLMM1.R
x /trunk/lme4/R/lme.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R
x /trunk/lme4/R/sscCrosstab.R
x /trunk/lme4/R/ssclme.R
~ /trunk/lme4/ToDo

Rev 1165 – Release 0.9-1

bates — Fri, 25 Feb 2005 13:30:34 +0000

bates – 21 file(s) modified
Release 0.9-1

~ /trunk/lme4/ChangeLog
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
~ /trunk/lme4/inst/doc/Implementation.Rnw
~ /trunk/lme4/inst/doc/MixedEffects.Rnw
~ /trunk/lme4/man/GLMM.Rd
~ /trunk/lme4/man/gsummary.Rd
x /trunk/lme4/man/intervals.Rd
~ /trunk/lme4/man/lme.Rd
~ /trunk/lme4/man/lmer-class.Rd
~ /trunk/lme4/man/lmer.Rd
~ /trunk/lme4/man/lmList.Rd
x /trunk/lme4/man/Names.Rd
~ /trunk/lme4/man/pooledSD.Rd
~ /trunk/lme4/man/random.effects.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/lmer.R
~ /trunk/lme4/R/lmList.R

Rev 1147 – Move data sets to mlmRev and MEMSS

bates — Wed, 23 Feb 2005 23:54:42 +0000

bates – 61 file(s) modified
Move data sets to mlmRev and MEMSS

x /trunk/lme4/data
~ /trunk/lme4/DESCRIPTION
~ /trunk/lme4/INDEX
x /trunk/lme4/man/Alfalfa.Rd
x /trunk/lme4/man/Assay.Rd
x /trunk/lme4/man/bdf.Rd
x /trunk/lme4/man/BodyWeight.Rd
x /trunk/lme4/man/Cefamandole.Rd
x /trunk/lme4/man/Contraception.Rd
x /trunk/lme4/man/Dialyzer.Rd
x /trunk/lme4/man/Early.Rd
x /trunk/lme4/man/Earthquake.Rd
x /trunk/lme4/man/egsingle.Rd
x /trunk/lme4/man/ergoStool.Rd
x /trunk/lme4/man/Fatigue.Rd
x /trunk/lme4/man/Gasoline.Rd
x /trunk/lme4/man/Gcsemv.Rd
~ /trunk/lme4/man/GLMM.Rd
x /trunk/lme4/man/Glucose.Rd
x /trunk/lme4/man/Glucose2.Rd
~ /trunk/lme4/man/gsummary.Rd
x /trunk/lme4/man/guImmun.Rd
x /trunk/lme4/man/Gun.Rd
x /trunk/lme4/man/guPrenat.Rd
x /trunk/lme4/man/Hsb82.Rd
x /trunk/lme4/man/IGF.Rd
~ /trunk/lme4/man/lme.Rd
~ /trunk/lme4/man/lmList.Rd
x /trunk/lme4/man/Machines.Rd
x /trunk/lme4/man/MathAchieve.Rd
x /trunk/lme4/man/MathAchSchool.Rd
x /trunk/lme4/man/Meat.Rd
x /trunk/lme4/man/Milk.Rd
x /trunk/lme4/man/Mmmec.Rd
x /trunk/lme4/man/Muscle.Rd
x /trunk/lme4/man/Nitrendipene.Rd
x /trunk/lme4/man/Oats.Rd
x /trunk/lme4/man/Orthodont.Rd
x /trunk/lme4/man/Ovary.Rd
x /trunk/lme4/man/Oxboys.Rd
x /trunk/lme4/man/Oxide.Rd
x /trunk/lme4/man/PBG.Rd
x /trunk/lme4/man/Phenobarb.Rd
x /trunk/lme4/man/Pixel.Rd
~ /trunk/lme4/man/pooledSD.Rd
x /trunk/lme4/man/Quinidine.Rd
x /trunk/lme4/man/Rail.Rd
x /trunk/lme4/man/RatPupWeight.Rd
x /trunk/lme4/man/Relaxin.Rd
x /trunk/lme4/man/Remifentanil.Rd
x /trunk/lme4/man/s3bbx.Rd
x /trunk/lme4/man/s3bby.Rd
x /trunk/lme4/man/Socatt.Rd
x /trunk/lme4/man/Soybean.Rd
x /trunk/lme4/man/Spruce.Rd
x /trunk/lme4/man/Tetracycline1.Rd
x /trunk/lme4/man/Tetracycline2.Rd
~ /trunk/lme4/man/VarCorr.Rd
x /trunk/lme4/man/Wafer.Rd
x /trunk/lme4/man/Wheat.Rd
x /trunk/lme4/man/Wheat2.Rd

Rev 283 – Readying rc1

bates — Tue, 27 Apr 2004 20:39:13 +0000

bates – 16 file(s) modified
Readying rc1

~ /trunk/lme4/INDEX
~ /trunk/lme4/man/family-class.Rd
~ /trunk/lme4/man/formulas.Rd
+ /trunk/lme4/man/GLMM.Rd
~ /trunk/lme4/man/lme-class.Rd
~ /trunk/lme4/man/lme.Rd
~ /trunk/lme4/man/Pixel.Rd
x /trunk/lme4/man/sparseGLMM.Rd
~ /trunk/lme4/man/VarCorr.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllGeneric.R
~ /trunk/lme4/R/formulas.R
+ /trunk/lme4/R/GLMM.R (copied from /trunk/lme4/R/sparseGLMM.R@282)
~ /trunk/lme4/R/groupedData.R
~ /trunk/lme4/R/lme.R
x /trunk/lme4/R/sparseGLMM.R

Rev 275 – Documentation changes for R CMD check

bates — Sun, 25 Apr 2004 18:00:15 +0000

bates – 48 file(s) modified
Documentation changes for R CMD check

~ /trunk/lme4/INDEX
x /trunk/lme4/man/EMstepsGets.Rd
x /trunk/lme4/man/EMupdateGets.Rd
~ /trunk/lme4/man/family-class.Rd
~ /trunk/lme4/man/fixed.effects.Rd
~ /trunk/lme4/man/formulas.Rd
x /trunk/lme4/man/glmm-class.Rd
x /trunk/lme4/man/GLMM.Rd
x /trunk/lme4/man/glmmStruct.Rd
~ /trunk/lme4/man/lme-class.Rd
~ /trunk/lme4/man/lme.Rd
~ /trunk/lme4/man/lmeControl.Rd
x /trunk/lme4/man/LMEgradient.Rd
x /trunk/lme4/man/lmeLevel-class.Rd
x /trunk/lme4/man/lmeLevel.Rd
~ /trunk/lme4/man/LMEoptimizeGets.Rd
x /trunk/lme4/man/logDet.Rd
x /trunk/lme4/man/model.matrixGets.Rd
x /trunk/lme4/man/nlme-internal.Rd
x /trunk/lme4/man/nlmeInternal-class.Rd
x /trunk/lme4/man/pdgradient.Rd
x /trunk/lme4/man/responseGets.Rd
x /trunk/lme4/man/reStruct-class.Rd
x /trunk/lme4/man/reStruct.Rd
~ /trunk/lme4/man/sparseGLMM.Rd
x /trunk/lme4/man/summary.reStruct-class.Rd
~ /trunk/lme4/man/VarCorr.Rd
x /trunk/lme4/man/weightedGets.Rd
~ /trunk/lme4/NAMESPACE
~ /trunk/lme4/R/AllClass.R
~ /trunk/lme4/R/AllGeneric.R
x /trunk/lme4/R/glmm.R
x /trunk/lme4/R/pdMat.R
~ /trunk/lme4/R/sparseGLMM.R
~ /trunk/lme4/R/VarCorr.R
x /trunk/lme4/src/Makevars
x /trunk/lme4/src/STYLE
~ /trunk/lme4/src/utilities.h
~ /trunk/lme4/tests/bdf.R
~ /trunk/lme4/tests/GLMM.R
~ /trunk/lme4/tests/guImmun.R
~ /trunk/lme4/tests/guPrenat.R
x /trunk/lme4/tests/pdDiag.R
x /trunk/lme4/tests/pdIdent.R
x /trunk/lme4/tests/pdLogChol.R
x /trunk/lme4/tests/pdNatural.R
+ /trunk/lme4/tests/ScotsSec.R
x /trunk/lme4/tests/ssclme.R

Rev 151 – Initial import

bates — Fri, 19 Mar 2004 20:16:29 +0000

bates – 181 file(s) modified
Initial import

+ /trunk/lme4
+ /trunk/lme4/ChangeLog
+ /trunk/lme4/data
+ /trunk/lme4/data/00Index
+ /trunk/lme4/data/Alfalfa.rda
+ /trunk/lme4/data/Assay.rda
+ /trunk/lme4/data/bdf.rda
+ /trunk/lme4/data/BodyWeight.rda
+ /trunk/lme4/data/Cefamandole.rda
+ /trunk/lme4/data/Dialyzer.rda
+ /trunk/lme4/data/Earthquake.rda
+ /trunk/lme4/data/ergoStool.rda
+ /trunk/lme4/data/Fatigue.rda
+ /trunk/lme4/data/Gasoline.rda
+ /trunk/lme4/data/Glucose.rda
+ /trunk/lme4/data/Glucose2.rda
+ /trunk/lme4/data/guImmun.rda
+ /trunk/lme4/data/Gun.rda
+ /trunk/lme4/data/guPrenat.rda
+ /trunk/lme4/data/Hsb82.rda
+ /trunk/lme4/data/IGF.rda
+ /trunk/lme4/data/Machines.rda
+ /trunk/lme4/data/MathAchieve.rda
+ /trunk/lme4/data/MathAchSchool.rda
+ /trunk/lme4/data/Meat.rda
+ /trunk/lme4/data/Milk.rda
+ /trunk/lme4/data/Muscle.rda
+ /trunk/lme4/data/Nitrendipene.rda
+ /trunk/lme4/data/Oats.rda
+ /trunk/lme4/data/Orthodont.rda
+ /trunk/lme4/data/Ovary.rda
+ /trunk/lme4/data/Oxboys.rda
+ /trunk/lme4/data/Oxide.rda
+ /trunk/lme4/data/PBG.rda
+ /trunk/lme4/data/Phenobarb.rda
+ /trunk/lme4/data/Pixel.rda
+ /trunk/lme4/data/Quinidine.rda
+ /trunk/lme4/data/Rail.rda
+ /trunk/lme4/data/RatPupWeight.rda
+ /trunk/lme4/data/Relaxin.rda
+ /trunk/lme4/data/Remifentanil.rda
+ /trunk/lme4/data/s3bbx.rda
+ /trunk/lme4/data/s3bby.rda
+ /trunk/lme4/data/Soybean.rda
+ /trunk/lme4/data/Spruce.rda
+ /trunk/lme4/data/Tetracycline1.rda
+ /trunk/lme4/data/Tetracycline2.rda
+ /trunk/lme4/data/Wafer.rda
+ /trunk/lme4/data/Wheat.rda
+ /trunk/lme4/data/Wheat2.rda
+ /trunk/lme4/DESCRIPTION
+ /trunk/lme4/Doxyfile
+ /trunk/lme4/INDEX
+ /trunk/lme4/install.R
+ /trunk/lme4/man
+ /trunk/lme4/man/Alfalfa.Rd
+ /trunk/lme4/man/Assay.Rd
+ /trunk/lme4/man/bdf.Rd
+ /trunk/lme4/man/BIC.Rd
+ /trunk/lme4/man/BodyWeight.Rd
+ /trunk/lme4/man/Cefamandole.Rd
+ /trunk/lme4/man/coerce-methods.Rd
+ /trunk/lme4/man/Dialyzer.Rd
+ /trunk/lme4/man/Earthquake.Rd
+ /trunk/lme4/man/EMstepsGets.Rd
+ /trunk/lme4/man/EMupdateGets.Rd
+ /trunk/lme4/man/ergoStool.Rd
+ /trunk/lme4/man/family-class.Rd
+ /trunk/lme4/man/Fatigue.Rd
+ /trunk/lme4/man/fixed.effects.Rd
+ /trunk/lme4/man/formulas.Rd
+ /trunk/lme4/man/Gasoline.Rd
+ /trunk/lme4/man/glmm-class.Rd
+ /trunk/lme4/man/GLMM.Rd
+ /trunk/lme4/man/glmmStruct.Rd
+ /trunk/lme4/man/Glucose.Rd
+ /trunk/lme4/man/Glucose2.Rd
+ /trunk/lme4/man/groupedData-class.Rd
+ /trunk/lme4/man/groupedData.Rd
+ /trunk/lme4/man/guImmun.Rd
+ /trunk/lme4/man/Gun.Rd
+ /trunk/lme4/man/guPrenat.Rd
+ /trunk/lme4/man/Hsb82.Rd
+ /trunk/lme4/man/IGF.Rd
+ /trunk/lme4/man/intervals.Rd
+ /trunk/lme4/man/lme-class.Rd
+ /trunk/lme4/man/lme.Rd
+ /trunk/lme4/man/lmeControl.Rd
+ /trunk/lme4/man/LMEgradient.Rd
+ /trunk/lme4/man/lmeLevel-class.Rd
+ /trunk/lme4/man/lmeLevel.Rd
+ /trunk/lme4/man/LMEoptimizeGets.Rd
+ /trunk/lme4/man/lmList-class.Rd
+ /trunk/lme4/man/lmList.Rd
+ /trunk/lme4/man/logDet.Rd
+ /trunk/lme4/man/Machines.Rd
+ /trunk/lme4/man/MathAchieve.Rd
+ /trunk/lme4/man/MathAchSchool.Rd
+ /trunk/lme4/man/Meat.Rd
+ /trunk/lme4/man/Milk.Rd
+ /trunk/lme4/man/model.matrixGets.Rd
+ /trunk/lme4/man/Muscle.Rd
+ /trunk/lme4/man/Names.Rd
+ /trunk/lme4/man/nffGroupedData-class.Rd
+ /trunk/lme4/man/nfGroupedData-class.Rd
+ /trunk/lme4/man/nfnGroupedData-class.Rd
+ /trunk/lme4/man/Nitrendipene.Rd
+ /trunk/lme4/man/nlme-internal.Rd
+ /trunk/lme4/man/nlmeInternal-class.Rd
+ /trunk/lme4/man/nmGroupedData-class.Rd
+ /trunk/lme4/man/Oats.Rd
+ /trunk/lme4/man/Orthodont.Rd
+ /trunk/lme4/man/Ovary.Rd
+ /trunk/lme4/man/Oxboys.Rd
+ /trunk/lme4/man/Oxide.Rd
+ /trunk/lme4/man/PBG.Rd
+ /trunk/lme4/man/pdgradient.Rd
+ /trunk/lme4/man/Phenobarb.Rd
+ /trunk/lme4/man/Pixel.Rd
+ /trunk/lme4/man/pooledSD.Rd
+ /trunk/lme4/man/Quinidine.Rd
+ /trunk/lme4/man/Rail.Rd
+ /trunk/lme4/man/random.effects.Rd
+ /trunk/lme4/man/RatPupWeight.Rd
+ /trunk/lme4/man/Relaxin.Rd
+ /trunk/lme4/man/Remifentanil.Rd
+ /trunk/lme4/man/responseGets.Rd
+ /trunk/lme4/man/reStruct-class.Rd
+ /trunk/lme4/man/reStruct.Rd
+ /trunk/lme4/man/s3bbx.Rd
+ /trunk/lme4/man/s3bby.Rd
+ /trunk/lme4/man/solve-methods.Rd
+ /trunk/lme4/man/Soybean.Rd
+ /trunk/lme4/man/Spruce.Rd
+ /trunk/lme4/man/summary.reStruct-class.Rd
+ /trunk/lme4/man/Tetracycline1.Rd
+ /trunk/lme4/man/Tetracycline2.Rd
+ /trunk/lme4/man/VarCorr-class.Rd
+ /trunk/lme4/man/VarCorr.Rd
+ /trunk/lme4/man/Wafer.Rd
+ /trunk/lme4/man/weightedGets.Rd
+ /trunk/lme4/man/Wheat.Rd
+ /trunk/lme4/man/Wheat2.Rd
+ /trunk/lme4/NAMESPACE
+ /trunk/lme4/R
+ /trunk/lme4/R/AllClass.R
+ /trunk/lme4/R/AllGeneric.R
+ /trunk/lme4/R/formulas.R
+ /trunk/lme4/R/glmm.R
+ /trunk/lme4/R/glmmStruct.R
+ /trunk/lme4/R/groupedData.R
+ /trunk/lme4/R/lme.R
+ /trunk/lme4/R/lmList.R
+ /trunk/lme4/R/pdMat.R
+ /trunk/lme4/R/reLevel.R
+ /trunk/lme4/R/reStruct.R
+ /trunk/lme4/R/ssclme.R
+ /trunk/lme4/R/VarCorr.R
+ /trunk/lme4/R/zzz.R
+ /trunk/lme4/src
+ /trunk/lme4/src/bitfield.c
+ /trunk/lme4/src/bitfield.h
+ /trunk/lme4/src/glmmStruct.c
+ /trunk/lme4/src/Makevars
+ /trunk/lme4/src/ms.c
+ /trunk/lme4/src/reStruct.c
+ /trunk/lme4/src/reStruct.h
+ /trunk/lme4/src/STYLE
+ /trunk/lme4/src/utilities.c
+ /trunk/lme4/src/utilities.h
+ /trunk/lme4/tests
+ /trunk/lme4/tests/bdf.R
+ /trunk/lme4/tests/GLMM.R
+ /trunk/lme4/tests/guImmun.R
+ /trunk/lme4/tests/guPrenat.R
+ /trunk/lme4/tests/Hsb82.R
+ /trunk/lme4/tests/pdDiag.R
+ /trunk/lme4/tests/pdIdent.R
+ /trunk/lme4/tests/pdLogChol.R
+ /trunk/lme4/tests/pdNatural.R
+ /trunk/lme4/tests/ssclme.R