R-packages – /branches/Matrix-mer2/R/sparseMatrix.R

Rev 2141 – Package name as Matrix, not Matrix.new

bates — Thu, 05 Jan 2006 23:07:20 +0000

bates – 26 file(s) modified
Package name as Matrix, not Matrix.new

~ /branches/Matrix-mer2/R/Auxiliaries.R
~ /branches/Matrix-mer2/R/Csparse.R
~ /branches/Matrix-mer2/R/denseMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/dgeMatrix.R
~ /branches/Matrix-mer2/R/dgRMatrix.R
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/dppMatrix.R
~ /branches/Matrix-mer2/R/dsCMatrix.R
~ /branches/Matrix-mer2/R/dspMatrix.R
~ /branches/Matrix-mer2/R/dsTMatrix.R
~ /branches/Matrix-mer2/R/dsyMatrix.R
~ /branches/Matrix-mer2/R/dtCMatrix.R
~ /branches/Matrix-mer2/R/dtpMatrix.R
~ /branches/Matrix-mer2/R/dtrMatrix.R
~ /branches/Matrix-mer2/R/dtTMatrix.R
~ /branches/Matrix-mer2/R/eigen.R
~ /branches/Matrix-mer2/R/lCholCMatrix.R
~ /branches/Matrix-mer2/R/ldenseMatrix.R
~ /branches/Matrix-mer2/R/lgTMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
~ /branches/Matrix-mer2/R/lsCMatrix.R
~ /branches/Matrix-mer2/R/ltCMatrix.R
~ /branches/Matrix-mer2/R/LU.R
~ /branches/Matrix-mer2/R/sparseMatrix.R
~ /branches/Matrix-mer2/R/Tsparse.R

Rev 2127 – Merging (not entirely successfully)

bates — Wed, 04 Jan 2006 21:31:47 +0000

bates – 34 file(s) modified
Merging (not entirely successfully)

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/AllGeneric.R
~ /branches/Matrix-mer2/R/Auxiliaries.R
~ /branches/Matrix-mer2/R/Csparse.R
~ /branches/Matrix-mer2/R/denseMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/dgeMatrix.R
~ /branches/Matrix-mer2/R/dgRMatrix.R
+ /branches/Matrix-mer2/R/diagMatrix.R (copied from /trunk/Matrix/R/diagMatrix.R@2124)
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/dppMatrix.R
~ /branches/Matrix-mer2/R/dsCMatrix.R
~ /branches/Matrix-mer2/R/dspMatrix.R
~ /branches/Matrix-mer2/R/dsTMatrix.R
~ /branches/Matrix-mer2/R/dsyMatrix.R
~ /branches/Matrix-mer2/R/dtCMatrix.R
~ /branches/Matrix-mer2/R/dtpMatrix.R
~ /branches/Matrix-mer2/R/dtrMatrix.R
~ /branches/Matrix-mer2/R/dtTMatrix.R
~ /branches/Matrix-mer2/R/eigen.R
~ /branches/Matrix-mer2/R/lCholCMatrix.R
~ /branches/Matrix-mer2/R/ldenseMatrix.R
~ /branches/Matrix-mer2/R/lgTMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
~ /branches/Matrix-mer2/R/lsCMatrix.R
~ /branches/Matrix-mer2/R/ltCMatrix.R
+ /branches/Matrix-mer2/R/ltTMatrix.R (copied from /trunk/Matrix/R/ltTMatrix.R@2124)
~ /branches/Matrix-mer2/R/LU.R
~ /branches/Matrix-mer2/R/Matrix.R
~ /branches/Matrix-mer2/R/sparseMatrix.R
~ /branches/Matrix-mer2/R/Tsparse.R
~ /branches/Matrix-mer2/src/dgeMatrix.c
~ /branches/Matrix-mer2/src/dgeMatrix.h
~ /branches/Matrix-mer2/src/init.c

Rev 2000 – Merging from trunk -r 1996:1999

bates — Fri, 11 Nov 2005 21:34:57 +0000

bates – 27 file(s) modified
Merging from trunk -r 1996:1999

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/bCrosstab.R
~ /branches/Matrix-mer2/R/dgBCMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/dgeMatrix.R
~ /branches/Matrix-mer2/R/dgRMatrix.R
~ /branches/Matrix-mer2/R/dgTMatrix.R
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/dppMatrix.R
~ /branches/Matrix-mer2/R/dsCMatrix.R
~ /branches/Matrix-mer2/R/dspMatrix.R
~ /branches/Matrix-mer2/R/dsTMatrix.R
~ /branches/Matrix-mer2/R/dsyMatrix.R
~ /branches/Matrix-mer2/R/dtCMatrix.R
~ /branches/Matrix-mer2/R/dtpMatrix.R
~ /branches/Matrix-mer2/R/dtrMatrix.R
~ /branches/Matrix-mer2/R/dtTMatrix.R
~ /branches/Matrix-mer2/R/eigen.R
~ /branches/Matrix-mer2/R/lCholCMatrix.R
~ /branches/Matrix-mer2/R/ldenseMatrix.R
~ /branches/Matrix-mer2/R/lgCMatrix.R
~ /branches/Matrix-mer2/R/lgTMatrix.R
~ /branches/Matrix-mer2/R/lsCMatrix.R
~ /branches/Matrix-mer2/R/ltCMatrix.R
~ /branches/Matrix-mer2/R/LU.R
~ /branches/Matrix-mer2/R/pdmatrix.R
~ /branches/Matrix-mer2/R/sparseMatrix.R

Rev 1929 – Incorporating CHOLMOD-based lmer

bates — Fri, 21 Oct 2005 19:33:37 +0000

bates – 1 file(s) modified
Incorporating CHOLMOD-based lmer

+ /branches/Matrix-mer2 (copied from /trunk/Matrix@1928)

Rev 1906 – isSymmetric() & simulate() updates; sparse subsetting

maechler — Fri, 07 Oct 2005 20:15:08 +0000

maechler – 9 file(s) modified
isSymmetric() & simulate() updates; sparse subsetting

~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/zzz.R

Rev 1869 – more coercions; particularly "d" <-> "l"; more tests (and more ...

maechler — Fri, 30 Sep 2005 17:28:00 +0000

maechler – 45 file(s) modified
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/dg_Matrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

maechler — Mon, 19 Sep 2005 19:01:31 +0000

maechler – 44 file(s) modified
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
+ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
+ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dgTMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R

Rev 1804 – cbind() / cbind2() methods for R >= 2.2.0

maechler — Thu, 08 Sep 2005 15:30:08 +0000

maechler – 13 file(s) modified
cbind() / cbind2() methods for R >= 2.2.0

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/zzz.R

Rev 1777 – new classes "index", "symmetricM" and "triangularM"; indexing for logical and ...

maechler — Wed, 31 Aug 2005 17:49:47 +0000

maechler – 15 file(s) modified
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/man/index-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/gTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/tests/dgTMatrix.R
+ /trunk/Matrix/tests/graph.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 1765 – prepare graphNEL coercion both for directed and undir.

maechler — Sat, 27 Aug 2005 21:27:51 +0000

maechler – 4 file(s) modified
prepare graphNEL coercion both for directed and undir.

~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/init.c

Rev 1761 – Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

maechler — Fri, 26 Aug 2005 17:26:49 +0000

maechler – 12 file(s) modified
Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dsRMatrix-class.Rd
~ /trunk/Matrix/man/gTMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
+ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
+ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R

Rev 1746 – printing of sparse logicals; "[" reorganization (part 1)

maechler — Fri, 19 Aug 2005 17:01:11 +0000

maechler – 16 file(s) modified
printing of sparse logicals; "[" reorganization (part 1)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/TODO

Rev 1735 – Coercion method for graphNEL to sparseMatrix class

bates — Thu, 18 Aug 2005 21:31:07 +0000

bates – 9 file(s) modified
Coercion method for graphNEL to sparseMatrix class

~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dgTMatrix.h
~ /trunk/Matrix/src/dsTMatrix.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1325 – "[" and show() methods for sparse matrices => RFC

maechler — Fri, 01 Apr 2005 07:36:09 +0000

maechler – 9 file(s) modified
"[" and show() methods for sparse matrices => RFC

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
+ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/tests/indexing.R

Rev 1322 – Multiplication operations for sparseMatrix and ddenseMatrix

bates — Thu, 31 Mar 2005 17:56:46 +0000

bates – 1 file(s) modified
Multiplication operations for sparseMatrix and ddenseMatrix

+ /trunk/Matrix/R/sparseMatrix.R