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Rev	Age	Author	Path	Log message	Diff	Changes
2141	7507 d 11 h	bates	/branches/Matrix-mer2/R/	Package name as Matrix, not Matrix.new		/branches/Matrix-mer2/R/Auxiliaries.R /branches/Matrix-mer2/R/Csparse.R /branches/Matrix-mer2/R/LU.R /branches/Matrix-mer2/R/Tsparse.R /branches/Matrix-mer2/R/denseMatrix.R /branches/Matrix-mer2/R/dgCMatrix.R /branches/Matrix-mer2/R/dgRMatrix.R /branches/Matrix-mer2/R/dgeMatrix.R /branches/Matrix-mer2/R/dpoMatrix.R /branches/Matrix-mer2/R/dppMatrix.R /branches/Matrix-mer2/R/dsCMatrix.R /branches/Matrix-mer2/R/dsTMatrix.R /branches/Matrix-mer2/R/dspMatrix.R /branches/Matrix-mer2/R/dsyMatrix.R /branches/Matrix-mer2/R/dtCMatrix.R /branches/Matrix-mer2/R/dtTMatrix.R /branches/Matrix-mer2/R/dtpMatrix.R /branches/Matrix-mer2/R/dtrMatrix.R /branches/Matrix-mer2/R/eigen.R /branches/Matrix-mer2/R/lCholCMatrix.R /branches/Matrix-mer2/R/ldenseMatrix.R /branches/Matrix-mer2/R/lgTMatrix.R /branches/Matrix-mer2/R/lmer.R /branches/Matrix-mer2/R/lsCMatrix.R /branches/Matrix-mer2/R/ltCMatrix.R /branches/Matrix-mer2/R/sparseMatrix.R
2127	7508 d 13 h	bates	/branches/Matrix-mer2/	Merging (not entirely successfully)		/branches/Matrix-mer2/R/diagMatrix.R /branches/Matrix-mer2/R/ltTMatrix.R /branches/Matrix-mer2/R/AllClass.R /branches/Matrix-mer2/R/AllGeneric.R /branches/Matrix-mer2/R/Auxiliaries.R /branches/Matrix-mer2/R/Csparse.R /branches/Matrix-mer2/R/LU.R /branches/Matrix-mer2/R/Matrix.R /branches/Matrix-mer2/R/Tsparse.R /branches/Matrix-mer2/R/denseMatrix.R /branches/Matrix-mer2/R/dgCMatrix.R /branches/Matrix-mer2/R/dgRMatrix.R /branches/Matrix-mer2/R/dgeMatrix.R /branches/Matrix-mer2/R/dpoMatrix.R /branches/Matrix-mer2/R/dppMatrix.R /branches/Matrix-mer2/R/dsCMatrix.R /branches/Matrix-mer2/R/dsTMatrix.R /branches/Matrix-mer2/R/dspMatrix.R /branches/Matrix-mer2/R/dsyMatrix.R /branches/Matrix-mer2/R/dtCMatrix.R /branches/Matrix-mer2/R/dtTMatrix.R /branches/Matrix-mer2/R/dtpMatrix.R /branches/Matrix-mer2/R/dtrMatrix.R /branches/Matrix-mer2/R/eigen.R /branches/Matrix-mer2/R/lCholCMatrix.R /branches/Matrix-mer2/R/ldenseMatrix.R /branches/Matrix-mer2/R/lgTMatrix.R /branches/Matrix-mer2/R/lmer.R /branches/Matrix-mer2/R/lsCMatrix.R /branches/Matrix-mer2/R/ltCMatrix.R /branches/Matrix-mer2/R/sparseMatrix.R /branches/Matrix-mer2/src/dgeMatrix.c /branches/Matrix-mer2/src/dgeMatrix.h /branches/Matrix-mer2/src/init.c
2000	7562 d 13 h	bates	/branches/Matrix-mer2/R/	Merging from trunk -r 1996:1999		/branches/Matrix-mer2/R/AllClass.R /branches/Matrix-mer2/R/LU.R /branches/Matrix-mer2/R/bCrosstab.R /branches/Matrix-mer2/R/dgBCMatrix.R /branches/Matrix-mer2/R/dgCMatrix.R /branches/Matrix-mer2/R/dgRMatrix.R /branches/Matrix-mer2/R/dgTMatrix.R /branches/Matrix-mer2/R/dgeMatrix.R /branches/Matrix-mer2/R/dpoMatrix.R /branches/Matrix-mer2/R/dppMatrix.R /branches/Matrix-mer2/R/dsCMatrix.R /branches/Matrix-mer2/R/dsTMatrix.R /branches/Matrix-mer2/R/dspMatrix.R /branches/Matrix-mer2/R/dsyMatrix.R /branches/Matrix-mer2/R/dtCMatrix.R /branches/Matrix-mer2/R/dtTMatrix.R /branches/Matrix-mer2/R/dtpMatrix.R /branches/Matrix-mer2/R/dtrMatrix.R /branches/Matrix-mer2/R/eigen.R /branches/Matrix-mer2/R/lCholCMatrix.R /branches/Matrix-mer2/R/ldenseMatrix.R /branches/Matrix-mer2/R/lgCMatrix.R /branches/Matrix-mer2/R/lgTMatrix.R /branches/Matrix-mer2/R/lsCMatrix.R /branches/Matrix-mer2/R/ltCMatrix.R /branches/Matrix-mer2/R/pdmatrix.R /branches/Matrix-mer2/R/sparseMatrix.R
1929	7583 d 15 h	bates	/branches/Matrix-mer2/	Incorporating CHOLMOD-based lmer		/branches/Matrix-mer2
1906	7597 d 14 h	maechler	/trunk/Matrix/R/	isSymmetric() & simulate() updates; sparse subsetting		/trunk/Matrix/R/AllGeneric.R /trunk/Matrix/R/Auxiliaries.R /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/denseMatrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/dsyMatrix.R /trunk/Matrix/R/lmer.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/R/zzz.R
1869	7604 d 17 h	maechler	/trunk/Matrix/	more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...		/trunk/Matrix/ChangeLog /trunk/Matrix/NAMESPACE /trunk/Matrix/R/Auxiliaries.R /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/dMatrix.R /trunk/Matrix/R/ddenseMatrix.R /trunk/Matrix/R/denseMatrix.R /trunk/Matrix/R/dgCMatrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/dgeMatrix.R /trunk/Matrix/R/dsTMatrix.R /trunk/Matrix/R/dsparseMatrix.R /trunk/Matrix/R/dtCMatrix.R /trunk/Matrix/R/dtTMatrix.R /trunk/Matrix/R/ldenseMatrix.R /trunk/Matrix/R/lgeMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/R/zzz.R /trunk/Matrix/TODO /trunk/Matrix/man/Matrix-class.Rd /trunk/Matrix/man/dCholCMatrix-class.Rd /trunk/Matrix/man/dMatrix-class.Rd /trunk/Matrix/man/denseMatrix-class.Rd /trunk/Matrix/man/dgCMatrix-class.Rd /trunk/Matrix/man/dgeMatrix-class.Rd /trunk/Matrix/man/dsCMatrix-class.Rd /trunk/Matrix/man/dsparseMatrix-class.Rd /trunk/Matrix/man/dsyMatrix-class.Rd /trunk/Matrix/man/dtCMatrix-class.Rd /trunk/Matrix/man/dtpMatrix-class.Rd /trunk/Matrix/man/dtrMatrix-class.Rd /trunk/Matrix/man/ldenseMatrix-class.Rd /trunk/Matrix/man/lgeMatrix-class.Rd /trunk/Matrix/man/lsparseMatrix-classes.Rd /trunk/Matrix/man/ltrMatrix-class.Rd /trunk/Matrix/man/pMatrix-class.Rd /trunk/Matrix/man/sparseMatrix-class.Rd /trunk/Matrix/src/Makefile /trunk/Matrix/src/dgCMatrix.c /trunk/Matrix/src/dgCMatrix.h /trunk/Matrix/src/init.c /trunk/Matrix/tests/base-matrix-fun.R /trunk/Matrix/tests/dg_Matrix.R /trunk/Matrix/tests/group-methods.R /trunk/Matrix/tests/simple.R
1833	7615 d 15 h	maechler	/trunk/Matrix/	too many changes: rbind2 for dM, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for all* classes		/trunk/Matrix/R/dsparseMatrix.R /trunk/Matrix/man/CsparseMatrix-class.Rd /trunk/Matrix/ChangeLog /trunk/Matrix/DESCRIPTION /trunk/Matrix/NAMESPACE /trunk/Matrix/R/AllClass.R /trunk/Matrix/R/AllGeneric.R /trunk/Matrix/R/Auxiliaries.R /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/Tsparse.R /trunk/Matrix/R/dMatrix.R /trunk/Matrix/R/ddenseMatrix.R /trunk/Matrix/R/denseMatrix.R /trunk/Matrix/R/dgCMatrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/dgeMatrix.R /trunk/Matrix/R/dsyMatrix.R /trunk/Matrix/R/dtrMatrix.R /trunk/Matrix/R/lgTMatrix.R /trunk/Matrix/R/lsparseMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/inst/test-tools.R /trunk/Matrix/man/Matrix-class.Rd /trunk/Matrix/man/Subassign-methods.Rd /trunk/Matrix/man/TsparseMatrix-class.Rd /trunk/Matrix/man/Xtrct-methods.Rd /trunk/Matrix/man/dMatrix-class.Rd /trunk/Matrix/man/ddenseMatrix-class.Rd /trunk/Matrix/man/dgCMatrix-class.Rd /trunk/Matrix/man/dsCMatrix-class.Rd /trunk/Matrix/man/dsparseMatrix-class.Rd /trunk/Matrix/man/dsyMatrix-class.Rd /trunk/Matrix/man/dtCMatrix-class.Rd /trunk/Matrix/man/dtrMatrix-class.Rd /trunk/Matrix/man/lsparseMatrix-classes.Rd /trunk/Matrix/man/sparseMatrix-class.Rd /trunk/Matrix/src/Csparse.c /trunk/Matrix/tests/Class+Meth.R /trunk/Matrix/tests/bind.R /trunk/Matrix/tests/dgTMatrix.R /trunk/Matrix/tests/group-methods.R /trunk/Matrix/tests/indexing.R /trunk/Matrix/tests/indexing.Rout.save /trunk/Matrix/tests/matprod.R
1804	7626 d 19 h	maechler	/trunk/Matrix/	cbind() / cbind2() methods for R >= 2.2.0		/trunk/Matrix/ChangeLog /trunk/Matrix/DESCRIPTION /trunk/Matrix/NAMESPACE /trunk/Matrix/R/Auxiliaries.R /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/ddenseMatrix.R /trunk/Matrix/R/dpoMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/R/zzz.R /trunk/Matrix/inst/test-tools.R /trunk/Matrix/man/Matrix-class.Rd /trunk/Matrix/man/ddenseMatrix-class.Rd /trunk/Matrix/man/sparseMatrix-class.Rd
1777	7634 d 16 h	maechler	/trunk/Matrix/	new classes "index", "symmetricM" and "triangularM"; indexing for logical and character indices; new tests; more to do		/trunk/Matrix/man/index-class.Rd /trunk/Matrix/tests/dgTMatrix.R /trunk/Matrix/tests/graph.R /trunk/Matrix/ChangeLog /trunk/Matrix/NAMESPACE /trunk/Matrix/R/AllClass.R /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/denseMatrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/gTMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/man/Subassign-methods.Rd /trunk/Matrix/man/Xtrct-methods.Rd /trunk/Matrix/tests/indexing.R /trunk/Matrix/tests/indexing.Rout.save
1765	7638 d 13 h	maechler	/trunk/Matrix/	prepare graphNEL coercion both for directed and undir.		/trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/src/dgTMatrix.c /trunk/Matrix/src/dgTMatrix.h /trunk/Matrix/src/init.c
1761	7639 d 17 h	maechler	/trunk/Matrix/	Version 0.98-6: "[" methods for dense matrices; first "[<-"; examples		/trunk/Matrix/R/denseMatrix.R /trunk/Matrix/man/Subassign-methods.Rd /trunk/Matrix/ChangeLog /trunk/Matrix/DESCRIPTION /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/man/Xtrct-methods.Rd /trunk/Matrix/man/denseMatrix-class.Rd /trunk/Matrix/man/dsRMatrix-class.Rd /trunk/Matrix/man/gTMatrix-class.Rd /trunk/Matrix/man/sparseMatrix-class.Rd
1746	7646 d 17 h	maechler	/trunk/Matrix/	printing of sparse logicals; "[" reorganization (part 1)		/trunk/Matrix/ChangeLog /trunk/Matrix/R/AllClass.R /trunk/Matrix/R/Matrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/lgCMatrix.R /trunk/Matrix/R/lgTMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/TODO /trunk/Matrix/man/Matrix-class.Rd /trunk/Matrix/man/Xtrct-methods.Rd /trunk/Matrix/man/dgCMatrix-class.Rd /trunk/Matrix/man/dgTMatrix-class.Rd /trunk/Matrix/man/lsparseMatrix-classes.Rd /trunk/Matrix/man/pMatrix-class.Rd /trunk/Matrix/man/sparseMatrix-class.Rd /trunk/Matrix/tests/Class+Meth.R
1735	7647 d 13 h	bates	/trunk/Matrix/	Coercion method for graphNEL to sparseMatrix class		/trunk/Matrix/R/dsTMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/src/Mutils.c /trunk/Matrix/src/Mutils.h /trunk/Matrix/src/dgTMatrix.c /trunk/Matrix/src/dgTMatrix.h /trunk/Matrix/src/dsTMatrix.c /trunk/Matrix/src/init.c /trunk/Matrix/src/lmer.c
1325	7787 d 3 h	maechler	/trunk/Matrix/	"[" and show() methods for sparse matrices => RFC		/trunk/Matrix/man/Xtrct-methods.Rd /trunk/Matrix/tests/indexing.R /trunk/Matrix/ChangeLog /trunk/Matrix/DESCRIPTION /trunk/Matrix/R/dgCMatrix.R /trunk/Matrix/R/dgTMatrix.R /trunk/Matrix/R/sparseMatrix.R /trunk/Matrix/man/dgCMatrix-class.Rd /trunk/Matrix/man/dgTMatrix-class.Rd
1322	7787 d 16 h	bates	/trunk/Matrix/R/	Multiplication operations for sparseMatrix and ddenseMatrix		/trunk/Matrix/R/sparseMatrix.R