The R Project SVN R-packages

### Define Methods that can be inherited for all subclasses

setAs("dgeMatrix", "lgeMatrix", d2l_Matrix)
setAs("dtrMatrix", "ltrMatrix", d2l_Matrix)
setAs("dtpMatrix", "ltpMatrix", d2l_Matrix)
setAs("dsyMatrix", "lsyMatrix", d2l_Matrix)
setAs("dspMatrix", "lspMatrix", d2l_Matrix)

## -- see also ./Matrix.R  e.g., for a show() method

## These methods are the 'fallback' methods for all dense numeric
## matrices in that they simply coerce the ddenseMatrix to a
## dgeMatrix. Methods for special forms override these.

setMethod("norm", signature(x = "ddenseMatrix", type = "missing"),
          function(x, type, ...) callGeneric(as(x, "dgeMatrix")))

setMethod("norm", signature(x = "ddenseMatrix", type = "character"),
          function(x, type, ...) callGeneric(as(x, "dgeMatrix"), type))

setMethod("rcond", signature(x = "ddenseMatrix", type = "missing"),
          function(x, type, ...) callGeneric(as(x, "dgeMatrix")))

setMethod("rcond", signature(x = "ddenseMatrix", type = "character"),
          function(x, type, ...) callGeneric(as(x, "dgeMatrix"), type))

## Not really useful; now require *identical* class for result:
## setMethod("t", signature(x = "ddenseMatrix"),
##    function(x) callGeneric(as(x, "dgeMatrix")))

setMethod("tcrossprod", signature(x = "ddenseMatrix", y = "missing"),
      function(x, y = NULL) callGeneric(as(x, "dgeMatrix")))

setMethod("crossprod", signature(x = "ddenseMatrix", y = "missing"),
          function(x, y = NULL) callGeneric(as(x, "dgeMatrix")))

setMethod("diag", signature(x = "ddenseMatrix"),
          function(x = 1, nrow, ncol = n) callGeneric(as(x, "dgeMatrix")))

setMethod("solve", signature(a = "ddenseMatrix", b = "missing"),
          function(a, b, ...) callGeneric(as(a, "dgeMatrix")))

setMethod("solve", signature(a = "ddenseMatrix", b = "ANY"),
          function(a, b, ...) callGeneric(as(a, "dgeMatrix"), b))

setMethod("lu", signature(x = "ddenseMatrix"),
          function(x, ...) callGeneric(as(x, "dgeMatrix")))

setMethod("determinant", signature(x = "ddenseMatrix", logarithm = "missing"),
          function(x, logarithm, ...) callGeneric(as(x, "dgeMatrix")))

setMethod("determinant", signature(x = "ddenseMatrix", logarithm = "logical"),
          function(x, logarithm, ...)
          callGeneric(as(x, "dgeMatrix"), logarithm))

## now done for "dMatrix":
## setMethod("expm", signature(x = "ddenseMatrix"),
##           function(x) callGeneric(as(x, "dgeMatrix")))

setMethod("Schur", signature(x = "ddenseMatrix", vectors = "missing"),
          function(x, vectors, ...) callGeneric(as(x, "dgeMatrix")))

setMethod("Schur", signature(x = "ddenseMatrix", vectors = "logical"),
          function(x, vectors, ...) callGeneric(as(x, "dgeMatrix"), vectors))


### NAMESPACE must export this -- also only for R version 2.2.x:
if(paste(R.version$major, R.version$minor, sep=".") >= "2.2") {
    ## for R 2.2.x (and later):

### cbind2
    setMethod("cbind2", signature(x = "ddenseMatrix", y = "numeric"),
          function(x, y) {
          d <- dim(x); nr <- d[1]; nc <- d[2]
          y <- rep(y, length.out = nr)# 'silent procrustes'
          ## beware of (packed) triangular, symmetric, ...
          x <- as(x, "dgeMatrix")
          x@x <- c(x@x, as.double(y))
          x@Dim[2] <- nc + 1:1
          if(is.character(dn <- x@Dimnames[[2]]))
              x@Dimnames[[2]] <- c(dn, "")
          x
          })
    ## the same, (x,y) <-> (y,x):
    setMethod("cbind2", signature(x = "numeric", y = "ddenseMatrix"),
          function(x, y) {
          d <- dim(y); nr <- d[1]; nc <- d[2]
          x <- rep(x, length.out = nr)
          y <- as(y, "dgeMatrix")
          y@x <- c(as.double(x), y@x)
          y@Dim[2] <- nc + 1:1
          if(is.character(dn <- y@Dimnames[[2]]))
              y@Dimnames[[2]] <- c("", dn)
          y
          })

    setMethod("cbind2", signature(x = "ddenseMatrix", y = "matrix"),
          function(x, y) callGeneric(x, as(y, "dgeMatrix")))
    setMethod("cbind2", signature(x = "matrix", y = "ddenseMatrix"),
          function(x, y) callGeneric(as(x, "dgeMatrix"), y))

    setMethod("cbind2", signature(x = "ddenseMatrix", y = "ddenseMatrix"),
          function(x, y) {
          nr <- rowCheck(x,y)
          ncx <- x@Dim[2]
          ncy <- y@Dim[2]
          ## beware of (packed) triangular, symmetric, ...
          hasDN <- !is.null(dnx <- dimnames(x)) |
               !is.null(dny <- dimnames(y))
          x <- as(x, "dgeMatrix")
          y <- as(y, "dgeMatrix")
          x@x <- c(x@x, y@x)
          x@Dim[2] <- ncx + ncy
          if(hasDN) {
              ## R and S+ are different in which names they take
              ## if they differ -- but there's no warning in any case
              rn <- if(!is.null(dnx[[1]])) dnx[[1]] else dny[[1]]
              cx <- dnx[[2]] ; cy <- dny[[2]]
              cn <- if(is.null(cx) && is.null(cy)) NULL
              else c(if(!is.null(cx)) cx else rep.int("", ncx),
                 if(!is.null(cy)) cy else rep.int("", ncy))
              x@Dimnames <- list(rn, cn)
          }
          x
          })

### rbind2 -- analogous to cbind2 --- more to do for @x though:

    setMethod("rbind2", signature(x = "ddenseMatrix", y = "numeric"),
          function(x, y) {
          if(is.character(dn <- x@Dimnames[[1]])) dn <- c(dn, "")
          new("dgeMatrix", Dim = x@Dim + 1:0,
              Dimnames = list(dn, x@Dimnames[[2]]),
              x = c(rbind2(as(x,"matrix"), y)))
          })
    ## the same, (x,y) <-> (y,x):
    setMethod("rbind2", signature(x = "numeric", y = "ddenseMatrix"),
          function(x, y) {
          if(is.character(dn <- y@Dimnames[[1]])) dn <- c("", dn)
          new("dgeMatrix", Dim = y@Dim + 1:0,
              Dimnames = list(dn, y@Dimnames[[2]]),
              x = c(rbind2(x, as(y,"matrix"))))
          })

    setMethod("rbind2", signature(x = "ddenseMatrix", y = "matrix"),
          function(x, y) callGeneric(x, as(y, "dgeMatrix")))
    setMethod("rbind2", signature(x = "matrix", y = "ddenseMatrix"),
          function(x, y) callGeneric(as(x, "dgeMatrix"), y))

    setMethod("rbind2", signature(x = "ddenseMatrix", y = "ddenseMatrix"),
          function(x, y) {
          nc <- colCheck(x,y)
          nrx <- x@Dim[1]
          nry <- y@Dim[1]
          dn <-
              if(!is.null(dnx <- dimnames(x)) |
             !is.null(dny <- dimnames(y))) {
              ## R and S+ are different in which names they take
              ## if they differ -- but there's no warning in any case
              list(if(is.null(rx <- dnx[[1]]) && is.null(ry <- dny[[1]]))
                   NULL else
                   c(if(!is.null(rx)) rx else rep.int("", nrx),
                 if(!is.null(ry)) ry else rep.int("", nry)),
                   if(!is.null(dnx[[2]])) dnx[[2]] else dny[[2]])

              } else list(NULL, NULL)
          ## beware of (packed) triangular, symmetric, ...
          new("dgeMatrix", Dim = c(nrx + nry, nc), Dimnames = dn,
              x = c(rbind2(as(x,"matrix"), as(y,"matrix"))))
          })

}## R-2.2.x ff