R-packages – /branches/Matrix-mer2/R/AllClass.R

Rev 2159 – Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl ...

bates — Tue, 10 Jan 2006 21:46:29 +0000

bates – 5 file(s) modified
Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl and lCHMsimpl

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/chm_common.c
~ /branches/Matrix-mer2/src/chm_common.h

Rev 2145 – Conversion of the L slot in an mer object to ...

bates — Sat, 07 Jan 2006 01:00:22 +0000

bates – 4 file(s) modified
Conversion of the L slot in an mer object to a dCHMfactor object

~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/chm_common.c
~ /branches/Matrix-mer2/src/lmer.c

Rev 2140 – Remove dBCMatrix and add dCHOLMODfactor class

bates — Thu, 05 Jan 2006 23:06:31 +0000

bates – 1 file(s) modified
Remove dBCMatrix and add dCHOLMODfactor class

~ /branches/Matrix-mer2/R/AllClass.R

Rev 2127 – Merging (not entirely successfully)

bates — Wed, 04 Jan 2006 21:31:47 +0000

bates – 34 file(s) modified
Merging (not entirely successfully)

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/AllGeneric.R
~ /branches/Matrix-mer2/R/Auxiliaries.R
~ /branches/Matrix-mer2/R/Csparse.R
~ /branches/Matrix-mer2/R/denseMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/dgeMatrix.R
~ /branches/Matrix-mer2/R/dgRMatrix.R
+ /branches/Matrix-mer2/R/diagMatrix.R (copied from /trunk/Matrix/R/diagMatrix.R@2124)
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/dppMatrix.R
~ /branches/Matrix-mer2/R/dsCMatrix.R
~ /branches/Matrix-mer2/R/dspMatrix.R
~ /branches/Matrix-mer2/R/dsTMatrix.R
~ /branches/Matrix-mer2/R/dsyMatrix.R
~ /branches/Matrix-mer2/R/dtCMatrix.R
~ /branches/Matrix-mer2/R/dtpMatrix.R
~ /branches/Matrix-mer2/R/dtrMatrix.R
~ /branches/Matrix-mer2/R/dtTMatrix.R
~ /branches/Matrix-mer2/R/eigen.R
~ /branches/Matrix-mer2/R/lCholCMatrix.R
~ /branches/Matrix-mer2/R/ldenseMatrix.R
~ /branches/Matrix-mer2/R/lgTMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
~ /branches/Matrix-mer2/R/lsCMatrix.R
~ /branches/Matrix-mer2/R/ltCMatrix.R
+ /branches/Matrix-mer2/R/ltTMatrix.R (copied from /trunk/Matrix/R/ltTMatrix.R@2124)
~ /branches/Matrix-mer2/R/LU.R
~ /branches/Matrix-mer2/R/Matrix.R
~ /branches/Matrix-mer2/R/sparseMatrix.R
~ /branches/Matrix-mer2/R/Tsparse.R
~ /branches/Matrix-mer2/src/dgeMatrix.c
~ /branches/Matrix-mer2/src/dgeMatrix.h
~ /branches/Matrix-mer2/src/init.c

Rev 2046 – Install and use status flags

bates — Tue, 06 Dec 2005 23:15:33 +0000

bates – 4 file(s) modified
Install and use status flags

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/Syms.h

Rev 2011 – Add slots to mer object, change to automatic factor and ...

bates — Sun, 13 Nov 2005 20:58:55 +0000

bates – 7 file(s) modified
Add slots to mer object, change to automatic factor and mer_secondary

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/dMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/lmer.h
~ /branches/Matrix-mer2/src/Syms.h

Rev 2010 – Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

bates — Sun, 13 Nov 2005 14:00:15 +0000

bates – 26 file(s) modified
Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/inst/doc/Comparisons.Rnw
~ /branches/Matrix-mer2/inst/doc/Introduction.Rnw
x /branches/Matrix-mer2/man/bCrosstab.Rd
x /branches/Matrix-mer2/man/dgBCMatrix-class.Rd
~ /branches/Matrix-mer2/man/dpoMatrix-class.Rd
~ /branches/Matrix-mer2/man/lmer-class.Rd
~ /branches/Matrix-mer2/man/mcmcsamp.Rd
x /branches/Matrix-mer2/man/pdmatrix-class.Rd
~ /branches/Matrix-mer2/man/ranef.Rd
~ /branches/Matrix-mer2/man/VarCorr.Rd
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
x /branches/Matrix-mer2/R/bCrosstab.R
x /branches/Matrix-mer2/R/dgBCMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
x /branches/Matrix-mer2/R/pdmatrix.R
~ /branches/Matrix-mer2/src/DEPS.mkf
x /branches/Matrix-mer2/src/dgBCMatrix.c
x /branches/Matrix-mer2/src/dgBCMatrix.h
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/lmer.h
~ /branches/Matrix-mer2/src/SOURCES_C.mkf
~ /branches/Matrix-mer2/tests/Class+Meth.R

Rev 2000 – Merging from trunk -r 1996:1999

bates — Fri, 11 Nov 2005 21:34:57 +0000

bates – 27 file(s) modified
Merging from trunk -r 1996:1999

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/bCrosstab.R
~ /branches/Matrix-mer2/R/dgBCMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/dgeMatrix.R
~ /branches/Matrix-mer2/R/dgRMatrix.R
~ /branches/Matrix-mer2/R/dgTMatrix.R
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/dppMatrix.R
~ /branches/Matrix-mer2/R/dsCMatrix.R
~ /branches/Matrix-mer2/R/dspMatrix.R
~ /branches/Matrix-mer2/R/dsTMatrix.R
~ /branches/Matrix-mer2/R/dsyMatrix.R
~ /branches/Matrix-mer2/R/dtCMatrix.R
~ /branches/Matrix-mer2/R/dtpMatrix.R
~ /branches/Matrix-mer2/R/dtrMatrix.R
~ /branches/Matrix-mer2/R/dtTMatrix.R
~ /branches/Matrix-mer2/R/eigen.R
~ /branches/Matrix-mer2/R/lCholCMatrix.R
~ /branches/Matrix-mer2/R/ldenseMatrix.R
~ /branches/Matrix-mer2/R/lgCMatrix.R
~ /branches/Matrix-mer2/R/lgTMatrix.R
~ /branches/Matrix-mer2/R/lsCMatrix.R
~ /branches/Matrix-mer2/R/ltCMatrix.R
~ /branches/Matrix-mer2/R/LU.R
~ /branches/Matrix-mer2/R/pdmatrix.R
~ /branches/Matrix-mer2/R/sparseMatrix.R

Rev 1968 – Add call and family to the mer2 object

bates — Mon, 07 Nov 2005 23:21:26 +0000

bates – 1 file(s) modified
Add call and family to the mer2 object

~ /branches/Matrix-mer2/R/AllClass.R

Rev 1964 – The beginning of a show method for mer2 objects

bates — Mon, 07 Nov 2005 13:58:31 +0000

bates – 4 file(s) modified
The beginning of a show method for mer2 objects

~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/lmer.R

Rev 1963 – New factorizations (for use with lmer)

bates — Fri, 04 Nov 2005 23:23:06 +0000

bates – 1 file(s) modified
New factorizations (for use with lmer)

~ /branches/Matrix-mer2/R/AllClass.R

Rev 1961 – Factoring building matrices from allocating matrices - not yet complete

bates — Thu, 03 Nov 2005 21:20:38 +0000

bates – 5 file(s) modified
Factoring building matrices from allocating matrices - not yet complete

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/lmer.R
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/Syms.h

Rev 1951 – Save model matrices and response in mer2 object

bates — Sat, 29 Oct 2005 23:43:02 +0000

bates – 2 file(s) modified
Save model matrices and response in mer2 object

~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/lmer.c

Rev 1942 – rearranging the deck chairs

bates — Thu, 27 Oct 2005 21:28:34 +0000

bates – 1 file(s) modified
rearranging the deck chairs

~ /branches/Matrix-mer2/R/AllClass.R

Rev 1929 – Incorporating CHOLMOD-based lmer

bates — Fri, 21 Oct 2005 19:33:37 +0000

bates – 1 file(s) modified
Incorporating CHOLMOD-based lmer

+ /branches/Matrix-mer2 (copied from /trunk/Matrix@1928)

Rev 1925 – Tidying up

bates — Tue, 11 Oct 2005 18:08:46 +0000

bates – 4 file(s) modified
Tidying up

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/TODO

Rev 1894 – More updates on lmer - still not quite correct

bates — Thu, 06 Oct 2005 03:07:23 +0000

bates – 6 file(s) modified
More updates on lmer - still not quite correct

~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/src/Syms.h

Rev 1876 – Modifications to mer2

bates — Mon, 03 Oct 2005 01:44:56 +0000

bates – 9 file(s) modified
Modifications to mer2

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1865 – move "factors" slot to "Matrix"

maechler — Wed, 28 Sep 2005 19:31:36 +0000

maechler – 8 file(s) modified
move "factors" slot to "Matrix"

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/symmetricMatrix-class.Rd
~ /trunk/Matrix/man/triangularMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/TODO

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

maechler — Wed, 28 Sep 2005 08:56:42 +0000

maechler – 37 file(s) modified
some "Summary" methods; some "Compare" group methods; logical dense matrices

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
+ /trunk/Matrix/man/ldenseMatrix-class.Rd
+ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
+ /trunk/Matrix/man/lsyMatrix-class.Rd
+ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
+ /trunk/Matrix/R/ldenseMatrix.R
+ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R

Rev 1851 – Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

bates — Tue, 27 Sep 2005 00:50:35 +0000

bates – 8 file(s) modified
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
x /trunk/Matrix/src/AMD/Source/Makefile.bak
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

maechler — Mon, 19 Sep 2005 19:01:31 +0000

maechler – 44 file(s) modified
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
+ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
+ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dgTMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R

Rev 1830 – Added CHOLMOD-based C functions. Still need methods defined in ...

bates — Sun, 18 Sep 2005 16:33:54 +0000

bates – 17 file(s) modified
Added CHOLMOD-based C functions. Still need methods defined in R and some error checking

~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/chm_common.h
+ /trunk/Matrix/src/Csparse.c
+ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Pattern.c
~ /trunk/Matrix/src/SOURCES_C.mkf
+ /trunk/Matrix/src/Tsparse.c
+ /trunk/Matrix/src/Tsparse.h
~ /trunk/Matrix/src/UMFPACK/Makefile

Rev 1789 – + prototypes for validity; pMatrix validity

maechler — Sat, 03 Sep 2005 21:58:37 +0000

maechler – 1 file(s) modified
+ prototypes for validity; pMatrix validity

~ /trunk/Matrix/R/AllClass.R

Rev 1778 – uplo &diag slots now go with superclass triangular* or symmetric*

maechler — Wed, 31 Aug 2005 20:31:47 +0000

maechler – 1 file(s) modified
uplo &diag slots now go with superclass triangular* or symmetric*

~ /trunk/Matrix/R/AllClass.R

Rev 1777 – new classes "index", "symmetricM" and "triangularM"; indexing for logical and ...

maechler — Wed, 31 Aug 2005 17:49:47 +0000

maechler – 15 file(s) modified
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/man/index-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/gTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/tests/dgTMatrix.R
+ /trunk/Matrix/tests/graph.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 1767 – clean up conversion of graphNEL to sparseMatrix

bates — Sat, 27 Aug 2005 22:50:57 +0000

bates – 4 file(s) modified
clean up conversion of graphNEL to sparseMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dgTMatrix.c

Rev 1746 – printing of sparse logicals; "[" reorganization (part 1)

maechler — Fri, 19 Aug 2005 17:01:11 +0000

maechler – 16 file(s) modified
printing of sparse logicals; "[" reorganization (part 1)

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/lgCMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/TODO

Rev 1728 – small fixups

maechler — Tue, 16 Aug 2005 20:20:13 +0000

maechler – 5 file(s) modified
small fixups

~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/ddenseMatrix.R

Rev 1723 – export dgR, dsR & dtR* Matrix - and "fix" ...

maechler — Tue, 16 Aug 2005 17:39:38 +0000

maechler – 4 file(s) modified
export dgR*, dsR* & dtR* Matrix - and "fix" stubs

+ /trunk/Matrix/man/dsRMatrix-class.Rd
+ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 1719 – +"denseMatrix" class; export defined but unused classes

maechler — Thu, 11 Aug 2005 07:41:59 +0000

maechler – 7 file(s) modified
+"denseMatrix" class; export defined but unused classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
+ /trunk/Matrix/man/denseMatrix-class.Rd
+ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Matrix.R

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1528 – Adding logical sparse matrix methods

bates — Tue, 17 May 2005 17:16:53 +0000

bates – 1 file(s) modified
Adding logical sparse matrix methods

~ /trunk/Matrix/R/AllClass.R

Rev 1381 – Release 0.95-6

bates — Mon, 18 Apr 2005 14:34:33 +0000

bates – 17 file(s) modified
Release 0.95-6

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/bCrosstab.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/init.c
+ /trunk/Matrix/src/lgCMatrix.c
+ /trunk/Matrix/src/lgCMatrix.h
+ /trunk/Matrix/src/lgTMatrix.c
+ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/Metis_utils.c
~ /trunk/Matrix/src/Metis_utils.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1314 – + virtual "sparseMatrix" classes

maechler — Sat, 26 Mar 2005 15:59:18 +0000

maechler – 6 file(s) modified
+ virtual "sparseMatrix" classes

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/man/dsparseMatrix-class.Rd
+ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Matrix.R

Rev 1301 – Removing the ssclme and sscCrosstab classes

bates — Thu, 24 Mar 2005 13:06:09 +0000

bates – 4 file(s) modified
Removing the ssclme and sscCrosstab classes

~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/coefGets.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 1300 – make virtual classes "VIRTUAL"

maechler — Thu, 24 Mar 2005 13:00:09 +0000

maechler – 6 file(s) modified
make virtual classes "VIRTUAL"

~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/tests/validObj.R

Rev 1282 – Updates to multiplication and other methods

bates — Wed, 16 Mar 2005 01:08:36 +0000

bates – 20 file(s) modified
Updates to multiplication and other methods

~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dpoMatrix.R
~ /trunk/Matrix/tests/validObj.R

Rev 1268 – permutation matrix class

bates — Tue, 15 Mar 2005 00:43:21 +0000

bates – 3 file(s) modified
permutation matrix class

+ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/R/AllClass.R
+ /trunk/Matrix/R/pMatrix.R

Rev 1261 – Add BunchKaufman factorization

bates — Sun, 13 Mar 2005 04:34:52 +0000

bates – 9 file(s) modified
Add BunchKaufman factorization

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/factorizations.h
~ /trunk/Matrix/src/init.c

R-packages – /branches/Matrix-mer2/R/AllClass.R

Rev 2159 – Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl ...

Rev 2145 – Conversion of the L slot in an mer object to ...

Rev 2140 – Remove dBCMatrix and add dCHOLMODfactor class

Rev 2127 – Merging (not entirely successfully)

Rev 2046 – Install and use status flags

Rev 2011 – Add slots to mer object, change to automatic factor and ...

Rev 2010 – Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

Rev 2000 – Merging from trunk -r 1996:1999

Rev 1968 – Add call and family to the mer2 object

Rev 1964 – The beginning of a show method for mer2 objects

Rev 1963 – New factorizations (for use with lmer)

Rev 1961 – Factoring building matrices from allocating matrices - not yet complete

Rev 1951 – Save model matrices and response in mer2 object

Rev 1942 – rearranging the deck chairs

Rev 1929 – Incorporating CHOLMOD-based lmer

Rev 1925 – Tidying up

Rev 1894 – More updates on lmer - still not quite correct

Rev 1876 – Modifications to mer2

Rev 1865 – move "factors" slot to "Matrix"

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

Rev 1851 – Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

Rev 1830 – Added CHOLMOD-based C functions. Still need methods defined in ...

Rev 1789 – + prototypes for validity; pMatrix validity

Rev 1778 – uplo &diag slots now go with superclass triangular* or symmetric*

Rev 1777 – new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and ...

Rev 1767 – clean up conversion of graphNEL to sparseMatrix

Rev 1746 – printing of sparse logicals; "[" reorganization (part 1)

Rev 1728 – small fixups

Rev 1723 – export dgR*, dsR* & dtR* Matrix - and "fix" ...

Rev 1719 – +"denseMatrix" class; export defined but unused classes

Rev 1583 – Moving lmer to the Matrix package

Rev 1528 – Adding logical sparse matrix methods

Rev 1381 – Release 0.95-6

Rev 1314 – + virtual "sparseMatrix" classes

Rev 1301 – Removing the ssclme and sscCrosstab classes

Rev 1300 – make virtual classes "VIRTUAL"

Rev 1282 – Updates to multiplication and other methods

Rev 1268 – permutation matrix class

Rev 1261 – Add BunchKaufman factorization

Rev 1777 – new classes "index", "symmetricM" and "triangularM"; indexing for logical and ...

Rev 1723 – export dgR, dsR & dtR* Matrix - and "fix" ...