R-packages – /branches/Matrix-mer2/NAMESPACE

Rev 2159 – Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl ...

bates — Tue, 10 Jan 2006 21:46:29 +0000

bates – 5 file(s) modified
Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl and lCHMsimpl

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/chm_common.c
~ /branches/Matrix-mer2/src/chm_common.h

Rev 2145 – Conversion of the L slot in an mer object to ...

bates — Sat, 07 Jan 2006 01:00:22 +0000

bates – 4 file(s) modified
Conversion of the L slot in an mer object to a dCHMfactor object

~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/chm_common.c
~ /branches/Matrix-mer2/src/lmer.c

Rev 2139 – Remove correlation class

bates — Thu, 05 Jan 2006 23:04:21 +0000

bates – 1 file(s) modified
Remove correlation class

~ /branches/Matrix-mer2/NAMESPACE

Rev 2134 – Working around namespace issues

bates — Thu, 05 Jan 2006 16:03:40 +0000

bates – 2 file(s) modified
Working around namespace issues

~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/src/lmer.c

Rev 2076 – More work on glmer_devLaplace and related functions

bates — Thu, 15 Dec 2005 23:17:09 +0000

bates – 3 file(s) modified
More work on glmer_devLaplace and related functions

~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/lmer.R
~ /branches/Matrix-mer2/src/lmer.c

Rev 2010 – Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

bates — Sun, 13 Nov 2005 14:00:15 +0000

bates – 26 file(s) modified
Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/inst/doc/Comparisons.Rnw
~ /branches/Matrix-mer2/inst/doc/Introduction.Rnw
x /branches/Matrix-mer2/man/bCrosstab.Rd
x /branches/Matrix-mer2/man/dgBCMatrix-class.Rd
~ /branches/Matrix-mer2/man/dpoMatrix-class.Rd
~ /branches/Matrix-mer2/man/lmer-class.Rd
~ /branches/Matrix-mer2/man/mcmcsamp.Rd
x /branches/Matrix-mer2/man/pdmatrix-class.Rd
~ /branches/Matrix-mer2/man/ranef.Rd
~ /branches/Matrix-mer2/man/VarCorr.Rd
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
x /branches/Matrix-mer2/R/bCrosstab.R
x /branches/Matrix-mer2/R/dgBCMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
x /branches/Matrix-mer2/R/pdmatrix.R
~ /branches/Matrix-mer2/src/DEPS.mkf
x /branches/Matrix-mer2/src/dgBCMatrix.c
x /branches/Matrix-mer2/src/dgBCMatrix.h
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/lmer.h
~ /branches/Matrix-mer2/src/SOURCES_C.mkf
~ /branches/Matrix-mer2/tests/Class+Meth.R

Rev 1964 – The beginning of a show method for mer2 objects

bates — Mon, 07 Nov 2005 13:58:31 +0000

bates – 4 file(s) modified
The beginning of a show method for mer2 objects

~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/R/dpoMatrix.R
~ /branches/Matrix-mer2/R/lmer.R

Rev 1929 – Incorporating CHOLMOD-based lmer

bates — Fri, 21 Oct 2005 19:33:37 +0000

bates – 1 file(s) modified
Incorporating CHOLMOD-based lmer

+ /branches/Matrix-mer2 (copied from /trunk/Matrix@1928)

Rev 1869 – more coercions; particularly "d" <-> "l"; more tests (and more ...

maechler — Fri, 30 Sep 2005 17:28:00 +0000

maechler – 45 file(s) modified
more coercions; particularly "d" <-> "l"; more tests (and more FIXMEs!); fixing two "index-0 bugs"; ...

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/denseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/ldenseMatrix-class.Rd
~ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/pMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dtCMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
~ /trunk/Matrix/R/ldenseMatrix.R
~ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/zzz.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Makefile
~ /trunk/Matrix/tests/base-matrix-fun.R
~ /trunk/Matrix/tests/dg_Matrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/simple.R
~ /trunk/Matrix/TODO

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

maechler — Wed, 28 Sep 2005 08:56:42 +0000

maechler – 37 file(s) modified
some "Summary" methods; some "Compare" group methods; logical dense matrices

~ /trunk/Matrix/Done
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
+ /trunk/Matrix/man/ldenseMatrix-class.Rd
+ /trunk/Matrix/man/lgeMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
+ /trunk/Matrix/man/lsyMatrix-class.Rd
+ /trunk/Matrix/man/ltrMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dMatrix.R
~ /trunk/Matrix/R/dppMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/dtTMatrix.R
+ /trunk/Matrix/R/ldenseMatrix.R
+ /trunk/Matrix/R/lgeMatrix.R
~ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/R/ltCMatrix.R
~ /trunk/Matrix/R/Matrix.R

Rev 1851 – Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

bates — Tue, 27 Sep 2005 00:50:35 +0000

bates – 8 file(s) modified
Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
x /trunk/Matrix/src/AMD/Source/Makefile.bak
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1845 – export more non-Primitive group generics

maechler — Tue, 20 Sep 2005 10:16:13 +0000

maechler – 1 file(s) modified
export more non-Primitive group generics

~ /trunk/Matrix/NAMESPACE

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

maechler — Mon, 19 Sep 2005 19:01:31 +0000

maechler – 44 file(s) modified
too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for sparse ones; more "s/gTMatrix/TsparseMatrix/" fixes; quite a few more tests, incl some for *all* classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
+ /trunk/Matrix/man/CsparseMatrix-class.Rd
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/dsparseMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/man/dtCMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/man/lsparseMatrix-classes.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/TsparseMatrix-class.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dMatrix.R
+ /trunk/Matrix/R/dsparseMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/lgTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/tests/bind.R
~ /trunk/Matrix/tests/Class+Meth.R
~ /trunk/Matrix/tests/dgTMatrix.R
~ /trunk/Matrix/tests/group-methods.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save
~ /trunk/Matrix/tests/matprod.R

Rev 1831 – More progress on incorporating CHOLMOD - still not passing CMD ...

bates — Sun, 18 Sep 2005 23:41:45 +0000

bates – 10 file(s) modified
More progress on incorporating CHOLMOD - still not passing CMD check

~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dtCMatrix.R
x /trunk/Matrix/R/gTMatrix.R
~ /trunk/Matrix/R/lsparseMatrix.R
+ /trunk/Matrix/R/Tsparse.R (copied from /trunk/Matrix/R/gTMatrix.R@1828)
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dgTMatrix.R

Rev 1804 – cbind() / cbind2() methods for R >= 2.2.0

maechler — Thu, 08 Sep 2005 15:30:08 +0000

maechler – 13 file(s) modified
cbind() / cbind2() methods for R >= 2.2.0

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/inst/test-tools.R
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Auxiliaries.R
~ /trunk/Matrix/R/ddenseMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
~ /trunk/Matrix/R/zzz.R

Rev 1779 – New simulate method for lmer objects

bates — Thu, 01 Sep 2005 13:46:21 +0000

bates – 7 file(s) modified
New simulate method for lmer objects

~ /trunk/Matrix/man/simulate.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1777 – new classes "index", "symmetricM" and "triangularM"; indexing for logical and ...

maechler — Wed, 31 Aug 2005 17:49:47 +0000

maechler – 15 file(s) modified
new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and character indices; new tests; more to do

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/man/index-class.Rd
~ /trunk/Matrix/man/Subassign-methods.Rd
~ /trunk/Matrix/man/Xtrct-methods.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/denseMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/gTMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/R/sparseMatrix.R
+ /trunk/Matrix/tests/dgTMatrix.R
+ /trunk/Matrix/tests/graph.R
~ /trunk/Matrix/tests/indexing.R
~ /trunk/Matrix/tests/indexing.Rout.save

Rev 1769 – Add simulate method for lmer

bates — Sun, 28 Aug 2005 13:57:39 +0000

bates – 4 file(s) modified
Add simulate method for lmer

~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 1723 – export dgR, dsR & dtR* Matrix - and "fix" ...

maechler — Tue, 16 Aug 2005 17:39:38 +0000

maechler – 4 file(s) modified
export dgR*, dsR* & dtR* Matrix - and "fix" stubs

+ /trunk/Matrix/man/dsRMatrix-class.Rd
+ /trunk/Matrix/man/dtRMatrix-class-def.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 1719 – +"denseMatrix" class; export defined but unused classes

maechler — Thu, 11 Aug 2005 07:41:59 +0000

maechler – 7 file(s) modified
+"denseMatrix" class; export defined but unused classes

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/ddenseMatrix-class.Rd
+ /trunk/Matrix/man/denseMatrix-class.Rd
+ /trunk/Matrix/man/unused-classes.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Matrix.R

Rev 1706 – Add writeHB and writeMM methods and generic

bates — Mon, 08 Aug 2005 13:33:18 +0000

bates – 12 file(s) modified
Add writeHB and writeMM methods and generic

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/externalFormats.Rd
+ /trunk/Matrix/man/writeHB.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/dsCMatrix.R
~ /trunk/Matrix/R/dsTMatrix.R
~ /trunk/Matrix/src/HBMM.c
~ /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c

Rev 1696 – Harwell-Boeing and MatrixMarket formats

bates — Sun, 07 Aug 2005 15:22:33 +0000

bates – 14 file(s) modified
Harwell-Boeing and MatrixMarket formats

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/inst/Copyrights
+ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/HBMM.R
+ /trunk/Matrix/src/HBMM.c
+ /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c
+ /trunk/Matrix/src/iohb.c
+ /trunk/Matrix/src/iohb.h
+ /trunk/Matrix/src/mmio.c
+ /trunk/Matrix/src/mmio.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1679 – Version 0.98-1

bates — Wed, 27 Jul 2005 23:07:04 +0000

bates – 12 file(s) modified
Version 0.98-1

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
+ /trunk/Matrix/man/mcmcsamp.Rd
+ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 1587 – Prepare for release 0.96-1

bates — Thu, 09 Jun 2005 16:57:55 +0000

bates – 6 file(s) modified
Prepare for release 0.96-1

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/lmerControl.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1532 – Adding logical sparse matrix methods

bates — Tue, 17 May 2005 17:18:54 +0000

bates – 1 file(s) modified
Adding logical sparse matrix methods

~ /trunk/Matrix/NAMESPACE

Rev 1467 – Getting ready for a release

bates — Mon, 09 May 2005 01:24:35 +0000

bates – 7 file(s) modified
Getting ready for a release

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h

Rev 1464 – Added colSums and friends for dgeMatrix class

bates — Fri, 06 May 2005 23:52:53 +0000

bates – 1 file(s) modified
Added colSums and friends for dgeMatrix class

~ /trunk/Matrix/NAMESPACE

Rev 1399 – Moving Doxyfile

bates — Thu, 21 Apr 2005 13:00:36 +0000

bates – 6 file(s) modified
Moving Doxyfile

~ /trunk/Matrix/DESCRIPTION
x /trunk/Matrix/Doxyfile
+ /trunk/Matrix/inst/Doxyfile (copied from /trunk/Matrix/Doxyfile@1389)
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/dgTMatrix.R

Rev 1381 – Release 0.95-6

bates — Mon, 18 Apr 2005 14:34:33 +0000

bates – 17 file(s) modified
Release 0.95-6

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/bCrosstab.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/init.c
+ /trunk/Matrix/src/lgCMatrix.c
+ /trunk/Matrix/src/lgCMatrix.h
+ /trunk/Matrix/src/lgTMatrix.c
+ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/Metis_utils.c
~ /trunk/Matrix/src/Metis_utils.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1314 – + virtual "sparseMatrix" classes

maechler — Sat, 26 Mar 2005 15:59:18 +0000

maechler – 6 file(s) modified
+ virtual "sparseMatrix" classes

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/man/dsparseMatrix-class.Rd
+ /trunk/Matrix/man/sparseMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/Matrix.R

Rev 1301 – Removing the ssclme and sscCrosstab classes

bates — Thu, 24 Mar 2005 13:06:09 +0000

bates – 4 file(s) modified
Removing the ssclme and sscCrosstab classes

~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/coefGets.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 1300 – make virtual classes "VIRTUAL"

maechler — Thu, 24 Mar 2005 13:00:09 +0000

maechler – 6 file(s) modified
make virtual classes "VIRTUAL"

~ /trunk/Matrix/man/dMatrix-class.Rd
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/tests/validObj.R

Rev 1288 – + as.matrix() + unname() method

maechler — Thu, 17 Mar 2005 17:52:06 +0000

maechler – 4 file(s) modified
+ as.matrix() + unname() method

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/man/Matrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/Matrix.R

Rev 1282 – Updates to multiplication and other methods

bates — Wed, 16 Mar 2005 01:08:36 +0000

bates – 20 file(s) modified
Updates to multiplication and other methods

~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
~ /trunk/Matrix/man/dsyMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dpoMatrix.R
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/dgeMatrix.h
~ /trunk/Matrix/src/dppMatrix.c
~ /trunk/Matrix/src/dppMatrix.h
~ /trunk/Matrix/src/dspMatrix.c
~ /trunk/Matrix/src/dspMatrix.h
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/dpoMatrix.R
~ /trunk/Matrix/tests/validObj.R

Rev 1270 – permutation matrix class

bates — Tue, 15 Mar 2005 00:44:13 +0000

bates – 1 file(s) modified
permutation matrix class

~ /trunk/Matrix/NAMESPACE

Rev 1261 – Add BunchKaufman factorization

bates — Sun, 13 Mar 2005 04:34:52 +0000

bates – 9 file(s) modified
Add BunchKaufman factorization

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/factorizations.h
~ /trunk/Matrix/src/init.c

Rev 1209 – Methods and coercions for the dtpMatrix class

bates — Thu, 03 Mar 2005 19:58:59 +0000

bates – 14 file(s) modified
Methods and coercions for the dtpMatrix class

~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
+ /trunk/Matrix/tests/dtpMatrix.R

Rev 1206 – Remove pdfactor class

bates — Thu, 03 Mar 2005 05:18:11 +0000

bates – 1 file(s) modified
Remove pdfactor class

~ /trunk/Matrix/NAMESPACE

Rev 1175 – dimnames(), "dimnames() <-", better t(), etc

maechler — Sun, 27 Feb 2005 00:04:16 +0000

maechler – 9 file(s) modified
dimnames(), "dimnames() <-", better t(), etc

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/man/dgeMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/R/dgeMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/R/Matrix.R
~ /trunk/Matrix/tests/validObj.R

R-packages – /branches/Matrix-mer2/NAMESPACE

Rev 2159 – Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl ...

Rev 2145 – Conversion of the L slot in an mer object to ...

Rev 2139 – Remove correlation class

Rev 2134 – Working around namespace issues

Rev 2076 – More work on glmer_devLaplace and related functions

Rev 2010 – Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

Rev 1964 – The beginning of a show method for mer2 objects

Rev 1929 – Incorporating CHOLMOD-based lmer

Rev 1869 – more coercions; particularly "d" <-> "l"; more tests (and more ...

Rev 1857 – some "Summary" methods; some "Compare" group methods; logical dense matrices

Rev 1851 – Temporary function mer2 to experiment with CHOLMOD-based mixed-effects

Rev 1845 – export more non-Primitive group generics

Rev 1833 – too many changes: rbind2 for dM*, cbind2(), "Math", "Arith" for ...

Rev 1831 – More progress on incorporating CHOLMOD - still not passing CMD ...

Rev 1804 – cbind() / cbind2() methods for R >= 2.2.0

Rev 1779 – New simulate method for lmer objects

Rev 1777 – new classes "index", "symmetricM*" and "triangularM*"; indexing for logical and ...

Rev 1769 – Add simulate method for lmer

Rev 1723 – export dgR*, dsR* & dtR* Matrix - and "fix" ...

Rev 1719 – +"denseMatrix" class; export defined but unused classes

Rev 1706 – Add writeHB and writeMM methods and generic

Rev 1696 – Harwell-Boeing and MatrixMarket formats

Rev 1679 – Version 0.98-1

Rev 1587 – Prepare for release 0.96-1

Rev 1583 – Moving lmer to the Matrix package

Rev 1532 – Adding logical sparse matrix methods

Rev 1467 – Getting ready for a release

Rev 1464 – Added colSums and friends for dgeMatrix class

Rev 1399 – Moving Doxyfile

Rev 1381 – Release 0.95-6

Rev 1314 – + virtual "sparseMatrix" classes

Rev 1301 – Removing the ssclme and sscCrosstab classes

Rev 1300 – make virtual classes "VIRTUAL"

Rev 1288 – + as.matrix() + unname() method

Rev 1282 – Updates to multiplication and other methods

Rev 1270 – permutation matrix class

Rev 1261 – Add BunchKaufman factorization

Rev 1209 – Methods and coercions for the dtpMatrix class

Rev 1206 – Remove pdfactor class

Rev 1175 – dimnames(), "dimnames() <-", better t(), etc

Rev 1777 – new classes "index", "symmetricM" and "triangularM"; indexing for logical and ...

Rev 1723 – export dgR, dsR & dtR* Matrix - and "fix" ...