R-packages – /branches/Matrix-mer2/INDEX

Rev 2159 – Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl ...

bates — Tue, 10 Jan 2006 21:46:29 +0000

bates – 5 file(s) modified
Change from dCHMfactor class to several classes dCHMsuper, lCHMsuper, dCHMsimpl and lCHMsimpl

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
~ /branches/Matrix-mer2/src/chm_common.c
~ /branches/Matrix-mer2/src/chm_common.h

Rev 2034 –

bates — Tue, 29 Nov 2005 03:03:03 +0000

bates – 1 file(s) modified

~ /branches/Matrix-mer2/INDEX

Rev 2010 – Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

bates — Sun, 13 Nov 2005 14:00:15 +0000

bates – 26 file(s) modified
Fold mer2 representation into lmer. Remove dgBCMatrix, pdmatrix, etc.

~ /branches/Matrix-mer2/INDEX
~ /branches/Matrix-mer2/inst/doc/Comparisons.Rnw
~ /branches/Matrix-mer2/inst/doc/Introduction.Rnw
x /branches/Matrix-mer2/man/bCrosstab.Rd
x /branches/Matrix-mer2/man/dgBCMatrix-class.Rd
~ /branches/Matrix-mer2/man/dpoMatrix-class.Rd
~ /branches/Matrix-mer2/man/lmer-class.Rd
~ /branches/Matrix-mer2/man/mcmcsamp.Rd
x /branches/Matrix-mer2/man/pdmatrix-class.Rd
~ /branches/Matrix-mer2/man/ranef.Rd
~ /branches/Matrix-mer2/man/VarCorr.Rd
~ /branches/Matrix-mer2/NAMESPACE
~ /branches/Matrix-mer2/R/AllClass.R
x /branches/Matrix-mer2/R/bCrosstab.R
x /branches/Matrix-mer2/R/dgBCMatrix.R
~ /branches/Matrix-mer2/R/dgCMatrix.R
~ /branches/Matrix-mer2/R/lmer.R
x /branches/Matrix-mer2/R/pdmatrix.R
~ /branches/Matrix-mer2/src/DEPS.mkf
x /branches/Matrix-mer2/src/dgBCMatrix.c
x /branches/Matrix-mer2/src/dgBCMatrix.h
~ /branches/Matrix-mer2/src/init.c
~ /branches/Matrix-mer2/src/lmer.c
~ /branches/Matrix-mer2/src/lmer.h
~ /branches/Matrix-mer2/src/SOURCES_C.mkf
~ /branches/Matrix-mer2/tests/Class+Meth.R

Rev 1929 – Incorporating CHOLMOD-based lmer

bates — Fri, 21 Oct 2005 19:33:37 +0000

bates – 1 file(s) modified
Incorporating CHOLMOD-based lmer

+ /branches/Matrix-mer2 (copied from /trunk/Matrix@1928)

Rev 1876 – Modifications to mer2

bates — Mon, 03 Oct 2005 01:44:56 +0000

bates – 9 file(s) modified
Modifications to mer2

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/chm_common.c
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h

Rev 1836 – crossprod and tcrossprod for Tsparse

bates — Mon, 19 Sep 2005 21:10:59 +0000

bates – 8 file(s) modified
crossprod and tcrossprod for Tsparse

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/Csparse.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/R/Tsparse.R
~ /trunk/Matrix/src/Csparse.c
~ /trunk/Matrix/src/Csparse.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/tests/matprod.R

Rev 1792 – Add "start" argument to lmer

bates — Tue, 06 Sep 2005 01:26:11 +0000

bates – 7 file(s) modified
Add "start" argument to lmer

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1775 – Update

bates — Tue, 30 Aug 2005 14:38:31 +0000

bates – 1 file(s) modified
Update

~ /trunk/Matrix/INDEX

Rev 1767 – clean up conversion of graphNEL to sparseMatrix

bates — Sat, 27 Aug 2005 22:50:57 +0000

bates – 4 file(s) modified
clean up conversion of graphNEL to sparseMatrix

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dgTMatrix.c

Rev 1736 – Release 0.98-5

bates — Thu, 18 Aug 2005 21:31:31 +0000

bates – 5 file(s) modified
Release 0.98-5

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/dsCMatrix-class.Rd
~ /trunk/Matrix/man/sparseMatrix-class.Rd

Rev 1726 – Release 0.98-4

bates — Tue, 16 Aug 2005 18:05:01 +0000

bates – 3 file(s) modified
Release 0.98-4

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX

Rev 1710 – update

bates — Mon, 08 Aug 2005 14:59:54 +0000

bates – 1 file(s) modified
update

~ /trunk/Matrix/INDEX

Rev 1696 – Harwell-Boeing and MatrixMarket formats

bates — Sun, 07 Aug 2005 15:22:33 +0000

bates – 14 file(s) modified
Harwell-Boeing and MatrixMarket formats

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/inst/Copyrights
+ /trunk/Matrix/man/externalFormats.Rd
~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/HBMM.R
+ /trunk/Matrix/src/HBMM.c
+ /trunk/Matrix/src/HBMM.h
~ /trunk/Matrix/src/init.c
+ /trunk/Matrix/src/iohb.c
+ /trunk/Matrix/src/iohb.h
+ /trunk/Matrix/src/mmio.c
+ /trunk/Matrix/src/mmio.h
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1679 – Version 0.98-1

bates — Wed, 27 Jul 2005 23:07:04 +0000

bates – 12 file(s) modified
Version 0.98-1

~ /trunk/Matrix/ChangeLog
+ /trunk/Matrix/data/sleepstudy.rda
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/lmer.Rd
+ /trunk/Matrix/man/mcmcsamp.Rd
+ /trunk/Matrix/man/sleepstudy.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/tests/lmer.R

Rev 1633 – Updates to man pages

bates — Mon, 04 Jul 2005 15:28:48 +0000

bates – 1 file(s) modified
Updates to man pages

~ /trunk/Matrix/INDEX

Rev 1612 – More work on MCMC (still incomplete)

bates — Sun, 26 Jun 2005 03:42:21 +0000

bates – 3 file(s) modified
More work on MCMC (still incomplete)

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 1610 – Adding MCMC capability (currently incomplete)

bates — Fri, 24 Jun 2005 23:06:33 +0000

bates – 5 file(s) modified
Adding MCMC capability (currently incomplete)

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1609 – Further development on AGQ and MCMC for glmm models

bates — Fri, 24 Jun 2005 15:38:43 +0000

bates – 5 file(s) modified
Further development on AGQ and MCMC for glmm models

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/lmer.h

Rev 1598 – Release 0.96-3

bates — Sun, 19 Jun 2005 14:59:30 +0000

bates – 3 file(s) modified
Release 0.96-3

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/lmer.R

Rev 1587 – Prepare for release 0.96-1

bates — Thu, 09 Jun 2005 16:57:55 +0000

bates – 6 file(s) modified
Prepare for release 0.96-1

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/lmerControl.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/lmer.R
~ /trunk/Matrix/src/lmer.c

Rev 1583 – Moving lmer to the Matrix package

bates — Wed, 08 Jun 2005 23:47:45 +0000

bates – 15 file(s) modified
Moving lmer to the Matrix package

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/BIC.Rd (copied from /trunk/lme4/man/BIC.Rd@1563)
+ /trunk/Matrix/man/fixef.Rd (copied from /trunk/lme4/man/fixef.Rd@1565)
+ /trunk/Matrix/man/lmer-class.Rd (copied from /trunk/lme4/man/lmer-class.Rd@1565)
+ /trunk/Matrix/man/lmer.Rd (copied from /trunk/lme4/man/lmer.Rd@1565)
+ /trunk/Matrix/man/lmerControl.Rd (copied from /trunk/lme4/man/lmerControl.Rd@1563)
+ /trunk/Matrix/man/ranef.Rd (copied from /trunk/lme4/man/ranef.Rd@1563)
+ /trunk/Matrix/man/VarCorr-class.Rd (copied from /trunk/lme4/man/VarCorr-class.Rd@1563)
+ /trunk/Matrix/man/VarCorr.Rd (copied from /trunk/lme4/man/VarCorr.Rd@1563)
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/AllGeneric.R
+ /trunk/Matrix/R/lmer.R (copied from /trunk/lme4/R/lmer.R@1578)
+ /trunk/Matrix/tests/lmer.R (copied from /trunk/lme4/tests/lmer.R@1565)

Rev 1473 – More logical sparse matrix methods

bates — Tue, 10 May 2005 01:42:05 +0000

bates – 9 file(s) modified
More logical sparse matrix methods

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/dMatrix-class.Rd
x /trunk/Matrix/man/lgCMatrix-class.Rd
+ /trunk/Matrix/man/lsparseMatrix-classes.Rd (copied from /trunk/Matrix/man/lgCMatrix-class.Rd@1471)
~ /trunk/Matrix/R/lgCMatrix.R
+ /trunk/Matrix/R/lsCMatrix.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h

Rev 1467 – Getting ready for a release

bates — Mon, 09 May 2005 01:24:35 +0000

bates – 7 file(s) modified
Getting ready for a release

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/dgCMatrix.R
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/lgCMatrix.c
~ /trunk/Matrix/src/lgCMatrix.h

Rev 1381 – Release 0.95-6

bates — Mon, 18 Apr 2005 14:34:33 +0000

bates – 17 file(s) modified
Release 0.95-6

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/bCrosstab.c
~ /trunk/Matrix/src/dgeMatrix.c
~ /trunk/Matrix/src/init.c
+ /trunk/Matrix/src/lgCMatrix.c
+ /trunk/Matrix/src/lgCMatrix.h
+ /trunk/Matrix/src/lgTMatrix.c
+ /trunk/Matrix/src/lgTMatrix.h
~ /trunk/Matrix/src/lmer.c
~ /trunk/Matrix/src/Metis_utils.c
~ /trunk/Matrix/src/Metis_utils.h
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/SOURCES_C.mkf

Rev 1315 – Added dgRMatrix methods and documentation

bates — Mon, 28 Mar 2005 14:03:32 +0000

bates – 8 file(s) modified
Added dgRMatrix methods and documentation

~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/dgRMatrix-class.Rd
~ /trunk/Matrix/R/dgCMatrix.R
+ /trunk/Matrix/R/dgRMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dgCMatrix.h
~ /trunk/Matrix/src/dtCMatrix.c
~ /trunk/Matrix/src/init.c

Rev 1302 – Add replace functions to calls to setIs for symmetric to ...

bates — Thu, 24 Mar 2005 13:50:16 +0000

bates – 3 file(s) modified
Add replace functions to calls to setIs for symmetric to positive definite

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/R/dspMatrix.R
~ /trunk/Matrix/R/dsyMatrix.R

Rev 1301 – Removing the ssclme and sscCrosstab classes

bates — Thu, 24 Mar 2005 13:06:09 +0000

bates – 4 file(s) modified
Removing the ssclme and sscCrosstab classes

~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/coefGets.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R

Rev 1275 – Updates

bates — Tue, 15 Mar 2005 00:51:42 +0000

bates – 3 file(s) modified
Updates

~ /trunk/Matrix/ChangeLog
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/TODO

Rev 1261 – Add BunchKaufman factorization

bates — Sun, 13 Mar 2005 04:34:52 +0000

bates – 9 file(s) modified
Add BunchKaufman factorization

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/Cholesky-class.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dsyMatrix.c
~ /trunk/Matrix/src/dsyMatrix.h
~ /trunk/Matrix/src/factorizations.c
~ /trunk/Matrix/src/factorizations.h
~ /trunk/Matrix/src/init.c

Rev 1259 – Fix dgeMatrix_dtpMatrix_mm and add test

bates — Thu, 10 Mar 2005 19:00:57 +0000

bates – 3 file(s) modified
Fix dgeMatrix_dtpMatrix_mm and add test

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/tests/dtpMatrix.R

Rev 1209 – Methods and coercions for the dtpMatrix class

bates — Thu, 03 Mar 2005 19:58:59 +0000

bates – 14 file(s) modified
Methods and coercions for the dtpMatrix class

~ /trunk/Matrix/INDEX
+ /trunk/Matrix/man/dtpMatrix-class.Rd
~ /trunk/Matrix/man/dtrMatrix-class.Rd
~ /trunk/Matrix/NAMESPACE
+ /trunk/Matrix/R/dtpMatrix.R
~ /trunk/Matrix/R/dtrMatrix.R
~ /trunk/Matrix/src/dtpMatrix.c
~ /trunk/Matrix/src/dtpMatrix.h
~ /trunk/Matrix/src/dtrMatrix.c
~ /trunk/Matrix/src/dtrMatrix.h
~ /trunk/Matrix/src/init.c
~ /trunk/Matrix/src/Mutils.c
~ /trunk/Matrix/src/Mutils.h
+ /trunk/Matrix/tests/dtpMatrix.R

Rev 1201 – more coercions

bates — Wed, 02 Mar 2005 19:54:23 +0000

bates – 1 file(s) modified
more coercions

~ /trunk/Matrix/INDEX

Rev 1194 – updated via "--force"

maechler — Tue, 01 Mar 2005 14:53:29 +0000

maechler – 1 file(s) modified
updated via "--force"

~ /trunk/Matrix/INDEX

Rev 1164 – Move ScotsSec to mlmRev package

bates — Fri, 25 Feb 2005 13:21:03 +0000

bates – 3 file(s) modified
Move ScotsSec to mlmRev package

x /trunk/Matrix/data/ScotsSec.rda
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/ScotsSec.Rd

Rev 1126 – Release 0.95-1

bates — Fri, 18 Feb 2005 19:24:43 +0000

bates – 13 file(s) modified
Release 0.95-1

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/Done
~ /trunk/Matrix/Doxyfile
~ /trunk/Matrix/INDEX
x /trunk/Matrix/man/corFactor.Rd
x /trunk/Matrix/man/corMatrix.Rd
~ /trunk/Matrix/man/expm.Rd
x /trunk/Matrix/man/matrixGets.Rd
x /trunk/Matrix/man/pdFactor.Rd
x /trunk/Matrix/man/pdMatrix.Rd
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllGeneric.R
~ /trunk/Matrix/tests/matr-exp.R

Rev 1033 – Fixes from the TODO list

bates — Mon, 07 Feb 2005 10:56:34 +0000

bates – 3 file(s) modified
Fixes from the TODO list

~ /trunk/Matrix/Done
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/TODO

Rev 991 – Getting package to pass CMD check

bates — Thu, 03 Feb 2005 14:24:03 +0000

bates – 12 file(s) modified
Getting package to pass CMD check

~ /trunk/Matrix/DESCRIPTION
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/inst/doc/Comparisons.Rnw
~ /trunk/Matrix/inst/doc/Introduction.Rnw
~ /trunk/Matrix/man/dgCMatrix-class.Rd
~ /trunk/Matrix/man/dgTMatrix-class.Rd
~ /trunk/Matrix/man/tcrossprod.Rd
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/R/dgTMatrix.R
~ /trunk/Matrix/src/dgCMatrix.c
~ /trunk/Matrix/src/dsCMatrix.c
~ /trunk/Matrix/tests/dpoMatrix.Rout.save

Rev 990 – renaming and rearranging classes

bates — Wed, 02 Feb 2005 19:40:26 +0000

bates – 5 file(s) modified
renaming and rearranging classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/src/DEPS.mkf
~ /trunk/Matrix/src/SOURCES_C.mkf
~ /trunk/Matrix/tests/dpoMatrix.R
~ /trunk/Matrix/TODO

Rev 988 – renaming and rearranging classes

bates — Wed, 02 Feb 2005 19:12:03 +0000

bates – 13 file(s) modified
renaming and rearranging classes

~ /trunk/Matrix/data/mm.rda
~ /trunk/Matrix/INDEX
~ /trunk/Matrix/man/dCholCMatrix-class.Rd
~ /trunk/Matrix/man/dpoMatrix-class.Rd
x /trunk/Matrix/R/cscBlocked.R
+ /trunk/Matrix/R/dgBCMatrix.R (copied from /trunk/Matrix/R/cscBlocked.R@982)
~ /trunk/Matrix/R/dgTMatrix.R
x /trunk/Matrix/tests/cscMatrix.R
+ /trunk/Matrix/tests/dgCMatrix.R (copied from /trunk/Matrix/tests/cscMatrix.R@982)
+ /trunk/Matrix/tests/dpoMatrix.R (copied from /trunk/Matrix/tests/poMatrix.R@982)
+ /trunk/Matrix/tests/dpoMatrix.Rout.save (copied from /trunk/Matrix/tests/poMatrix.Rout.save@982)
x /trunk/Matrix/tests/poMatrix.R
x /trunk/Matrix/tests/poMatrix.Rout.save

Rev 981 – renaming and rearranging classes

bates — Wed, 02 Feb 2005 15:37:31 +0000

bates – 5 file(s) modified
renaming and rearranging classes

~ /trunk/Matrix/INDEX
~ /trunk/Matrix/NAMESPACE
~ /trunk/Matrix/R/AllClass.R
~ /trunk/Matrix/src/dgTMatrix.c
~ /trunk/Matrix/TODO